Wall clock time and date at job start Tue Mar 31 2020 06:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46737 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47112 * 179.97438 * 11 10 9 13 13 C 1.34230 * 117.00158 * 180.02562 * 12 11 10 14 14 O 1.20820 * 119.99855 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99832 * 180.02562 * 13 12 11 16 16 H 1.08999 * 109.54729 * 39.80255 * 15 13 12 17 17 C 1.53031 * 109.54842 * 279.51622 * 15 13 12 18 18 C 1.52588 * 109.98682 * 176.49800 * 17 15 13 19 19 C 1.52591 * 110.64243 * 69.98349 * 18 17 15 20 20 C 1.53035 * 109.98780 * 290.01708 * 19 18 17 21 21 S 1.81666 * 108.99901 * 63.64628 * 20 19 18 22 22 O 1.42108 * 108.66323 * 191.37689 * 21 20 19 23 23 O 1.42101 * 108.75107 * 60.06610 * 21 20 19 24 24 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 26 26 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 27 27 H 1.08991 * 109.47217 * 299.99935 * 10 9 7 28 28 H 1.09001 * 109.46939 * 60.00411 * 10 9 7 29 29 H 1.08999 * 109.47855 * 300.00574 * 11 10 9 30 30 H 1.09001 * 109.46830 * 60.00639 * 11 10 9 31 31 H 1.09004 * 109.38346 * 296.65414 * 17 15 13 32 32 H 1.09002 * 109.38766 * 56.33482 * 17 15 13 33 33 H 1.08995 * 109.24274 * 309.68317 * 18 17 15 34 34 H 1.08997 * 109.21107 * 190.26041 * 18 17 15 35 35 H 1.09000 * 109.38276 * 169.85600 * 19 18 17 36 36 H 1.09004 * 109.38072 * 50.17205 * 19 18 17 37 37 H 1.09009 * 109.54711 * 303.79220 * 20 19 18 38 38 H 1.08996 * 109.54933 * 183.50178 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0217 -2.6364 0.0126 11 6 5.5516 -2.6363 0.0113 12 8 6.0358 -4.0052 0.0191 13 6 7.3665 -4.1810 0.0196 14 8 8.1024 -3.2228 0.0133 15 6 7.9426 -5.5736 0.0269 16 1 7.3525 -6.2158 -0.6270 17 6 7.9184 -6.1303 1.4521 18 6 8.4190 -7.5717 1.4576 19 6 9.9162 -7.6224 1.1674 20 6 10.1792 -7.2441 -0.2919 21 16 9.6613 -5.5236 -0.5595 22 8 9.6577 -5.2617 -1.9563 23 8 10.4120 -4.6810 0.3040 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6844 -0.8877 26 1 3.8753 -0.6757 0.8924 27 1 3.6588 -3.1454 0.9053 28 1 3.6581 -3.1550 -0.8746 29 1 5.9143 -2.1273 -0.8817 30 1 5.9156 -2.1176 0.8982 31 1 8.5606 -5.5219 2.0891 32 1 6.8984 -6.1000 1.8352 33 1 7.8859 -8.1400 0.6955 34 1 8.2274 -8.0142 2.4352 35 1 10.2866 -8.6307 1.3523 36 1 10.4354 -6.9222 1.8219 37 1 9.6096 -7.9027 -0.9478 38 1 11.2430 -7.3427 -0.5082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772410690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:17 Heat of formation + Delta-G solvation = -172.856992 kcal Electronic energy + Delta-G solvation = -21274.131853 eV Core-core repulsion = 17822.683924 eV Total energy + Delta-G solvation = -3451.447929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 11.60 seconds Orbital eigenvalues (eV) -40.68440 -37.90482 -37.05713 -36.83630 -36.27357 -34.16159 -32.74247 -31.82718 -28.87886 -27.53443 -24.79253 -23.22537 -21.61115 -21.38413 -20.32278 -19.15311 -18.05063 -17.56389 -16.83607 -16.72386 -16.57976 -16.08523 -15.88616 -15.18240 -14.65525 -14.30977 -14.23864 -14.12521 -13.49153 -13.27559 -12.78514 -12.55874 -12.47306 -12.34789 -12.30984 -12.17080 -11.98517 -11.90530 -11.53827 -11.13288 -11.12815 -11.01897 -10.88897 -10.60059 -10.54275 -10.05764 -9.87242 -9.76492 -9.28328 -8.59065 -6.09446 -4.08905 -0.53046 1.87960 2.21168 2.35769 3.28933 3.36750 3.38447 3.40373 3.49956 3.92092 3.98765 4.15666 4.21965 4.34579 4.41232 4.48251 4.65005 4.83435 4.94864 5.17905 5.22434 5.23726 5.36861 5.37915 5.39394 5.47394 5.58638 5.77298 6.16071 6.32159 6.51739 6.72216 7.16114 7.28129 7.48519 7.70898 8.46572 8.94244 9.51968 11.03635 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.003094 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.898599 B = 9048.158935 C = 9442.105136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.286 1.286 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.061 3.939 12 O -0.342 6.342 13 C 0.488 3.512 14 O -0.494 6.494 15 C -0.584 4.584 16 H 0.167 0.833 17 C -0.104 4.104 18 C -0.138 4.138 19 C -0.115 4.115 20 C -0.606 4.606 21 S 2.440 3.560 22 O -0.927 6.927 23 O -0.905 6.905 24 H 0.264 0.736 25 H 0.020 0.980 26 H 0.015 0.985 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.015 -19.641 2.479 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.212 1.212 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.012 4.012 12 O -0.257 6.257 13 C 0.329 3.671 14 O -0.382 6.382 15 C -0.689 4.689 16 H 0.185 0.815 17 C -0.142 4.142 18 C -0.176 4.176 19 C -0.153 4.153 20 C -0.735 4.735 21 S 2.617 3.383 22 O -0.924 6.924 23 O -0.902 6.902 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.155 0.845 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 21.471 -18.475 2.134 28.406 hybrid contribution -0.227 0.315 0.146 0.414 sum 21.245 -18.160 2.280 28.041 Atomic orbital electron populations 1.69903 1.06297 1.27041 1.50740 1.25010 0.94761 0.99206 0.94390 0.86783 0.80400 0.83527 0.78634 1.20170 1.18936 1.21243 1.21034 0.88964 0.94687 1.51385 0.90798 1.19532 0.97593 0.90902 0.96812 1.21581 0.88345 1.01012 1.02944 1.23701 0.97347 0.77406 1.02724 1.86476 1.21874 1.34946 1.82449 1.21900 0.82715 0.89170 0.73363 1.90836 1.60334 1.42026 1.45047 1.30588 1.26532 1.00719 1.11070 0.81510 1.21371 1.06222 0.96494 0.90136 1.21721 0.95131 0.95831 1.04891 1.21360 0.97157 1.05005 0.91751 1.30329 1.12820 1.24028 1.06344 1.07941 0.76703 0.78103 0.75601 1.93612 1.85211 1.83586 1.30019 1.93605 1.66257 1.62373 1.67953 0.92599 0.96154 0.96625 0.91427 0.91372 0.90949 0.90983 0.88921 0.88055 0.90115 0.88798 0.89019 0.89358 0.84501 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.69 27.46 -169.99 -4.67 17.02 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.26 -6.29 6.55 56.52 0.37 -5.92 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.10 -1.98 5.53 -26.73 -0.15 -2.12 16 11 C 0.06 1.06 5.47 37.16 0.20 1.26 16 12 O -0.34 -5.34 10.22 -39.26 -0.40 -5.74 16 13 C 0.49 7.14 7.14 36.01 0.26 7.39 16 14 O -0.49 -8.84 15.17 -24.16 -0.37 -9.20 16 15 C -0.58 -5.40 2.92 -27.86 -0.08 -5.48 16 16 H 0.17 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.10 -0.70 5.00 -26.93 -0.13 -0.83 16 18 C -0.14 -0.50 5.63 -27.15 -0.15 -0.65 16 19 C -0.11 -0.42 5.73 -26.92 -0.15 -0.57 16 20 C -0.61 -2.67 6.35 37.18 0.24 -2.43 16 21 S 2.44 24.39 4.24 -107.50 -0.46 23.94 16 22 O -0.93 -12.68 18.10 -57.82 -1.05 -13.73 16 23 O -0.90 -12.28 17.12 -64.27 -1.10 -13.38 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.48 7.21 -51.93 -0.37 0.10 16 26 H 0.02 0.36 7.56 -51.93 -0.39 -0.03 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 30 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 31 H 0.09 0.66 8.02 -51.93 -0.42 0.24 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 34 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.09 0.35 8.02 -51.93 -0.42 -0.07 16 37 H 0.14 0.28 8.14 -51.92 -0.42 -0.14 16 38 H 0.14 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -37.56 326.58 -8.69 -46.25 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -5.83 Total: -6.14 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.52 Total: -17.05 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.77 Total: -26.89 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -2.91 Total: -42.05 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 16 Polarization: 24.39 SS G_CDS: -0.46 Total: 23.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.56 -8.69 -46.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772410690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.603 kcal (2) G-P(sol) polarization free energy of solvation -37.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.61 seconds