Wall clock time and date at job start Tue Mar 31 2020 06:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46737 * 179.97438 * 10 9 7 12 12 O 1.45203 * 109.47112 * 179.97438 * 11 10 9 13 13 C 1.34230 * 117.00158 * 180.02562 * 12 11 10 14 14 O 1.20820 * 119.99855 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99832 * 180.02562 * 13 12 11 16 16 H 1.08999 * 109.54729 * 39.80255 * 15 13 12 17 17 C 1.53031 * 109.54842 * 279.51622 * 15 13 12 18 18 C 1.52588 * 109.98682 * 176.49800 * 17 15 13 19 19 C 1.52591 * 110.64243 * 69.98349 * 18 17 15 20 20 C 1.53035 * 109.98780 * 290.01708 * 19 18 17 21 21 S 1.81666 * 108.99901 * 63.64628 * 20 19 18 22 22 O 1.42108 * 108.66323 * 191.37689 * 21 20 19 23 23 O 1.42101 * 108.75107 * 60.06610 * 21 20 19 24 24 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 26 26 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 27 27 H 1.08991 * 109.47217 * 299.99935 * 10 9 7 28 28 H 1.09001 * 109.46939 * 60.00411 * 10 9 7 29 29 H 1.08999 * 109.47855 * 300.00574 * 11 10 9 30 30 H 1.09001 * 109.46830 * 60.00639 * 11 10 9 31 31 H 1.09004 * 109.38346 * 296.65414 * 17 15 13 32 32 H 1.09002 * 109.38766 * 56.33482 * 17 15 13 33 33 H 1.08995 * 109.24274 * 309.68317 * 18 17 15 34 34 H 1.08997 * 109.21107 * 190.26041 * 18 17 15 35 35 H 1.09000 * 109.38276 * 169.85600 * 19 18 17 36 36 H 1.09004 * 109.38072 * 50.17205 * 19 18 17 37 37 H 1.09009 * 109.54711 * 303.79220 * 20 19 18 38 38 H 1.08996 * 109.54933 * 183.50178 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0217 -2.6364 0.0126 11 6 5.5516 -2.6363 0.0113 12 8 6.0358 -4.0052 0.0191 13 6 7.3665 -4.1810 0.0196 14 8 8.1024 -3.2228 0.0133 15 6 7.9426 -5.5736 0.0269 16 1 7.3525 -6.2158 -0.6270 17 6 7.9184 -6.1303 1.4521 18 6 8.4190 -7.5717 1.4576 19 6 9.9162 -7.6224 1.1674 20 6 10.1792 -7.2441 -0.2919 21 16 9.6613 -5.5236 -0.5595 22 8 9.6577 -5.2617 -1.9563 23 8 10.4120 -4.6810 0.3040 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6844 -0.8877 26 1 3.8753 -0.6757 0.8924 27 1 3.6588 -3.1454 0.9053 28 1 3.6581 -3.1550 -0.8746 29 1 5.9143 -2.1273 -0.8817 30 1 5.9156 -2.1176 0.8982 31 1 8.5606 -5.5219 2.0891 32 1 6.8984 -6.1000 1.8352 33 1 7.8859 -8.1400 0.6955 34 1 8.2274 -8.0142 2.4352 35 1 10.2866 -8.6307 1.3523 36 1 10.4354 -6.9222 1.8219 37 1 9.6096 -7.9027 -0.9478 38 1 11.2430 -7.3427 -0.5082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772410690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:54 Heat of formation + Delta-G solvation = -200.343764 kcal Electronic energy + Delta-G solvation = -21275.323769 eV Core-core repulsion = 17822.683924 eV Total energy + Delta-G solvation = -3452.639845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 20.27 seconds Orbital eigenvalues (eV) -41.88634 -38.58886 -38.13977 -37.65922 -37.13010 -36.00415 -33.98961 -33.21610 -29.80192 -28.94492 -25.59397 -24.71651 -22.58925 -22.11325 -21.93569 -19.89322 -19.18647 -18.98619 -18.33032 -17.90375 -17.35818 -17.10610 -16.66458 -16.29800 -16.00595 -15.47021 -14.96312 -14.87823 -14.80598 -14.39624 -14.21588 -13.85267 -13.79761 -13.31057 -13.19496 -12.93159 -12.91728 -12.77721 -12.65954 -12.43489 -12.21277 -12.13595 -11.82910 -11.80365 -11.74495 -11.57867 -11.48612 -11.40837 -11.06846 -10.79906 -8.32724 -6.37720 -1.21926 0.75674 1.26528 1.34862 1.36777 1.48114 1.55712 2.33322 2.68182 2.84948 3.02500 3.18719 3.40854 3.67796 3.74812 3.86071 3.91483 3.92207 4.01123 4.25799 4.29351 4.50795 4.61392 4.66228 4.67529 4.83108 4.90651 4.92806 5.11103 5.15735 5.20909 5.35766 5.39991 5.43968 5.58773 6.22046 6.29488 6.69844 7.26986 8.83716 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.003094 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.898599 B = 9048.158935 C = 9442.105136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.249 1.249 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.038 0.962 9 C -0.011 4.011 10 C -0.091 4.091 11 C 0.066 3.934 12 O -0.341 6.341 13 C 0.479 3.521 14 O -0.534 6.534 15 C -0.576 4.576 16 H 0.204 0.796 17 C -0.107 4.107 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.561 4.561 21 S 2.412 3.588 22 O -0.980 6.980 23 O -0.958 6.958 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.175 0.825 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.828 -22.072 2.940 31.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.172 1.172 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.056 0.944 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.007 4.007 12 O -0.257 6.257 13 C 0.322 3.678 14 O -0.424 6.424 15 C -0.681 4.681 16 H 0.221 0.779 17 C -0.145 4.145 18 C -0.172 4.172 19 C -0.159 4.159 20 C -0.696 4.696 21 S 2.595 3.405 22 O -0.977 6.977 23 O -0.955 6.955 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.193 0.807 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 23.288 -20.876 2.586 31.383 hybrid contribution -0.819 0.895 0.042 1.214 sum 22.470 -19.982 2.628 30.184 Atomic orbital electron populations 1.70047 1.08210 1.28290 1.52312 1.25966 0.95618 1.03408 0.94022 0.85696 0.79471 0.78411 0.79333 1.18993 1.17245 1.20814 1.21376 0.91531 0.93451 1.50805 0.94366 1.19466 0.94486 0.93669 0.97218 1.21327 0.90002 0.98540 1.02963 1.23396 0.95734 0.78645 1.02952 1.86462 1.22950 1.33582 1.82674 1.22987 0.81786 0.91206 0.71804 1.90820 1.60862 1.43978 1.46746 1.30736 1.26002 0.97727 1.13673 0.77911 1.21537 1.06371 0.98705 0.87911 1.21794 0.95160 0.93273 1.06985 1.21547 0.97331 1.06597 0.90470 1.30081 1.14488 1.16844 1.08188 1.08470 0.76652 0.81255 0.74084 1.93543 1.85739 1.86006 1.32387 1.93537 1.67245 1.66450 1.68302 0.92334 0.95770 0.95687 0.91281 0.91572 0.91052 0.90588 0.90175 0.87943 0.87624 0.86948 0.85573 0.90138 0.80716 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 2 C 0.01 0.42 5.47 84.65 0.46 0.88 16 3 Si 0.95 44.50 27.46 68.60 1.88 46.38 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.25 -10.96 6.55 99.48 0.65 -10.30 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.53 -30.72 9.66 25.60 0.25 -30.48 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 9 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 10 C -0.09 -3.53 5.53 30.59 0.17 -3.36 16 11 C 0.07 2.27 5.47 71.98 0.39 2.66 16 12 O -0.34 -10.51 10.22 -51.42 -0.53 -11.03 16 13 C 0.48 14.03 7.14 71.24 0.51 14.54 16 14 O -0.53 -19.79 15.17 27.16 0.41 -19.37 16 15 C -0.58 -9.81 2.92 29.86 0.09 -9.72 16 16 H 0.20 1.77 8.14 -2.39 -0.02 1.76 16 17 C -0.11 -1.20 5.00 30.47 0.15 -1.05 16 18 C -0.14 -0.34 5.63 30.32 0.17 -0.17 16 19 C -0.12 -0.30 5.73 30.47 0.17 -0.12 16 20 C -0.56 -2.49 6.35 71.99 0.46 -2.04 16 21 S 2.41 46.68 4.24 -56.49 -0.24 46.44 16 22 O -0.98 -27.24 18.10 -127.39 -2.31 -29.55 16 23 O -0.96 -27.07 17.12 -121.21 -2.08 -29.14 16 24 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.02 1.11 7.21 -2.39 -0.02 1.09 16 26 H 0.02 1.12 7.56 -2.39 -0.02 1.10 16 27 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.07 2.46 8.13 -2.39 -0.02 2.44 16 30 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 31 H 0.08 1.09 8.02 -2.39 -0.02 1.07 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.11 -0.18 8.09 -2.39 -0.02 -0.20 16 34 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.13 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.08 0.39 8.02 -2.38 -0.02 0.38 16 37 H 0.18 -0.38 8.14 -2.38 -0.02 -0.40 16 38 H 0.16 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -86.80 326.58 1.38 -85.43 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: 0.98 Total: -0.75 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 2.94 Total: -29.24 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.30 Total: -59.16 kcal Atomic # 8 Polarization: -84.60 SS G_CDS: -4.49 Total: -89.10 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Atomic # 16 Polarization: 46.68 SS G_CDS: -0.24 Total: 46.44 kcal Total: -86.80 1.38 -85.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772410690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.916 kcal (2) G-P(sol) polarization free energy of solvation -86.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.27 seconds