Wall clock time and date at job start Tue Mar 31 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99948 * 2 1 4 4 H 1.48499 * 109.46977 * 239.99620 * 3 2 1 5 5 H 1.48505 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46929 * 119.99752 * 3 2 1 7 7 C 1.37881 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99360 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46473 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46832 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47067 * 180.02562 * 11 10 9 13 13 C 1.34236 * 116.99995 * 180.02562 * 12 11 10 14 14 O 1.20825 * 119.99666 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00034 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.55026 * 325.19150 * 15 13 12 17 17 C 1.53040 * 109.62970 * 85.43116 * 15 13 12 18 18 C 1.52589 * 109.98567 * 183.55085 * 17 15 13 19 19 C 1.52587 * 110.64209 * 290.01171 * 18 17 15 20 20 C 1.53036 * 109.98462 * 69.98781 * 19 18 17 21 21 S 1.81667 * 109.54980 * 204.99500 * 15 13 12 22 22 O 1.42097 * 108.66324 * 71.41781 * 21 15 13 23 23 O 1.42102 * 108.74766 * 300.11324 * 21 15 13 24 24 H 0.96999 * 120.00240 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47057 * 59.99843 * 9 7 2 26 26 H 1.08994 * 109.46826 * 299.99272 * 9 7 2 27 27 H 1.08992 * 109.47317 * 59.99728 * 10 9 7 28 28 H 1.09001 * 109.47373 * 299.99306 * 10 9 7 29 29 H 1.08996 * 109.47522 * 59.99160 * 11 10 9 30 30 H 1.09004 * 109.46929 * 299.99633 * 11 10 9 31 31 H 1.09000 * 109.38264 * 303.70828 * 17 15 13 32 32 H 1.08997 * 109.38968 * 63.39064 * 17 15 13 33 33 H 1.09006 * 109.24438 * 169.71061 * 18 17 15 34 34 H 1.09000 * 109.24609 * 50.31463 * 18 17 15 35 35 H 1.09002 * 109.38626 * 309.82827 * 19 18 17 36 36 H 1.09005 * 109.38240 * 190.14623 * 19 18 17 37 37 H 1.09002 * 109.55030 * 56.20875 * 20 19 18 38 38 H 1.09004 * 109.54742 * 176.49451 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 8 2.4238 -6.0907 0.0005 13 6 1.9108 -7.3312 -0.0005 14 8 0.7129 -7.4894 -0.0014 15 6 2.8287 -8.5262 -0.0005 16 1 3.7201 -8.3014 -0.5861 17 6 3.2320 -8.8648 1.4364 18 6 4.2308 -10.0183 1.4398 19 6 3.5495 -11.3210 1.0309 20 6 3.1841 -11.2762 -0.4546 21 16 1.9690 -9.9531 -0.7252 22 8 1.8328 -9.7398 -2.1234 23 8 0.8123 -10.2322 0.0516 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8904 28 1 2.8719 -3.6044 -0.8895 29 1 0.8538 -5.0446 -0.8902 30 1 0.8534 -5.0451 0.8897 31 1 3.6882 -7.9899 1.8998 32 1 2.3461 -9.1516 2.0029 33 1 4.6476 -10.1298 2.4408 34 1 5.0359 -9.7985 0.7387 35 1 2.6440 -11.4568 1.6222 36 1 4.2266 -12.1558 1.2120 37 1 4.0787 -11.0761 -1.0444 38 1 2.7548 -12.2325 -0.7536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772410727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:31 Heat of formation + Delta-G solvation = -176.442873 kcal Electronic energy + Delta-G solvation = -21213.884782 eV Core-core repulsion = 17762.281358 eV Total energy + Delta-G solvation = -3451.603425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -40.59538 -37.87090 -37.01781 -36.73673 -36.23597 -34.05775 -32.70434 -31.66877 -28.79885 -27.06699 -24.75806 -23.35330 -21.58048 -21.33037 -20.40415 -19.11277 -17.99715 -17.47932 -16.71890 -16.49249 -16.47816 -15.95178 -15.79655 -15.13319 -14.58169 -14.49482 -14.22625 -14.05501 -13.46025 -13.28058 -12.49121 -12.38517 -12.31810 -12.26424 -12.20091 -12.08281 -11.95941 -11.85132 -11.51020 -11.07869 -10.98821 -10.83704 -10.70322 -10.67487 -10.49679 -10.44523 -9.78043 -9.54736 -9.20523 -8.40260 -6.05003 -4.08547 -0.49524 1.95226 2.25278 2.43278 3.31222 3.35750 3.37824 3.42094 3.53686 3.95221 4.02142 4.19390 4.25530 4.37813 4.41683 4.56166 4.68457 4.86413 4.97844 5.21203 5.24682 5.30745 5.40731 5.49394 5.50428 5.52498 5.61371 5.93228 6.30115 6.47815 6.71154 6.92264 7.56554 7.58958 7.68106 7.92637 8.33096 8.97328 9.55766 11.06385 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.037822 B = 0.002894 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.133991 B = 9671.438735 C =10010.650647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.063 3.937 12 O -0.344 6.344 13 C 0.486 3.514 14 O -0.492 6.492 15 C -0.583 4.583 16 H 0.166 0.834 17 C -0.103 4.103 18 C -0.138 4.138 19 C -0.114 4.114 20 C -0.606 4.606 21 S 2.439 3.561 22 O -0.928 6.928 23 O -0.903 6.903 24 H 0.263 0.737 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.136 0.864 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.797 -25.226 2.439 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.009 4.009 12 O -0.260 6.260 13 C 0.326 3.674 14 O -0.380 6.380 15 C -0.689 4.689 16 H 0.184 0.816 17 C -0.142 4.142 18 C -0.176 4.176 19 C -0.153 4.153 20 C -0.735 4.735 21 S 2.615 3.385 22 O -0.925 6.925 23 O -0.901 6.901 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.155 0.845 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.443 -25.096 2.045 26.892 hybrid contribution 1.188 1.099 0.192 1.629 sum 10.630 -23.998 2.237 26.342 Atomic orbital electron populations 1.69956 1.06094 1.26947 1.50279 1.25035 0.94888 0.99382 0.95141 0.86591 0.79519 0.82843 0.78650 1.20171 1.21234 1.20184 1.21119 0.93068 0.90654 1.51348 0.92473 1.19055 0.93818 0.90630 0.97811 1.21792 1.00013 0.90754 1.02076 1.23710 0.91253 0.83196 1.02778 1.86476 1.42660 1.14465 1.82401 1.21884 0.87033 0.84894 0.73586 1.90844 1.15698 1.86588 1.44870 1.30547 1.13693 1.12743 1.11886 0.81632 1.21360 1.01527 1.01179 0.90092 1.21719 0.98441 0.92821 1.04571 1.21357 1.03186 0.99630 0.91084 1.30328 1.18191 1.18899 1.06100 1.07974 0.77165 0.77762 0.75584 1.93613 1.85226 1.84438 1.29182 1.93610 1.42168 1.82432 1.71844 0.92776 0.96119 0.96143 0.92044 0.92002 0.90937 0.90974 0.88188 0.88851 0.88833 0.90152 0.89337 0.89051 0.84537 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.63 5.46 -17.81 -0.10 1.54 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.24 5.53 -26.73 -0.15 -2.38 16 11 C 0.06 1.17 5.47 37.16 0.20 1.38 16 12 O -0.34 -5.67 10.22 -39.27 -0.40 -6.07 16 13 C 0.49 7.44 7.09 36.00 0.26 7.69 16 14 O -0.49 -9.17 15.23 -24.19 -0.37 -9.54 16 15 C -0.58 -5.67 2.91 -27.87 -0.08 -5.75 16 16 H 0.17 1.05 8.14 -51.93 -0.42 0.62 16 17 C -0.10 -0.73 5.00 -26.92 -0.13 -0.87 16 18 C -0.14 -0.53 5.63 -27.15 -0.15 -0.69 16 19 C -0.11 -0.44 5.73 -26.92 -0.15 -0.60 16 20 C -0.61 -2.85 6.35 37.18 0.24 -2.61 16 21 S 2.44 25.38 4.31 -107.50 -0.46 24.91 16 22 O -0.93 -13.05 18.10 -57.82 -1.05 -14.09 16 23 O -0.90 -12.66 17.08 -64.30 -1.10 -13.76 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 30 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.70 8.02 -51.93 -0.42 0.29 16 33 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.20 8.09 -51.93 -0.42 -0.22 16 35 H 0.09 0.38 8.02 -51.93 -0.42 -0.04 16 36 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.14 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.14 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -37.15 330.22 -9.08 -46.23 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -5.87 Total: -6.20 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.53 Total: -16.85 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -2.92 Total: -43.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 25.38 SS G_CDS: -0.46 Total: 24.91 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -37.15 -9.08 -46.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772410727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.211 kcal (2) G-P(sol) polarization free energy of solvation -37.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds