Wall clock time and date at job start Tue Mar 31 2020 06:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99948 * 2 1 4 4 H 1.48499 * 109.46977 * 239.99620 * 3 2 1 5 5 H 1.48505 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46929 * 119.99752 * 3 2 1 7 7 C 1.37881 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99360 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46473 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46832 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47067 * 180.02562 * 11 10 9 13 13 C 1.34236 * 116.99995 * 180.02562 * 12 11 10 14 14 O 1.20825 * 119.99666 * 359.97438 * 13 12 11 15 15 C 1.50693 * 120.00034 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.55026 * 325.19150 * 15 13 12 17 17 C 1.53040 * 109.62970 * 85.43116 * 15 13 12 18 18 C 1.52589 * 109.98567 * 183.55085 * 17 15 13 19 19 C 1.52587 * 110.64209 * 290.01171 * 18 17 15 20 20 C 1.53036 * 109.98462 * 69.98781 * 19 18 17 21 21 S 1.81667 * 109.54980 * 204.99500 * 15 13 12 22 22 O 1.42097 * 108.66324 * 71.41781 * 21 15 13 23 23 O 1.42102 * 108.74766 * 300.11324 * 21 15 13 24 24 H 0.96999 * 120.00240 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47057 * 59.99843 * 9 7 2 26 26 H 1.08994 * 109.46826 * 299.99272 * 9 7 2 27 27 H 1.08992 * 109.47317 * 59.99728 * 10 9 7 28 28 H 1.09001 * 109.47373 * 299.99306 * 10 9 7 29 29 H 1.08996 * 109.47522 * 59.99160 * 11 10 9 30 30 H 1.09004 * 109.46929 * 299.99633 * 11 10 9 31 31 H 1.09000 * 109.38264 * 303.70828 * 17 15 13 32 32 H 1.08997 * 109.38968 * 63.39064 * 17 15 13 33 33 H 1.09006 * 109.24438 * 169.71061 * 18 17 15 34 34 H 1.09000 * 109.24609 * 50.31463 * 18 17 15 35 35 H 1.09002 * 109.38626 * 309.82827 * 19 18 17 36 36 H 1.09005 * 109.38240 * 190.14623 * 19 18 17 37 37 H 1.09002 * 109.55030 * 56.20875 * 20 19 18 38 38 H 1.09004 * 109.54742 * 176.49451 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 8 2.4238 -6.0907 0.0005 13 6 1.9108 -7.3312 -0.0005 14 8 0.7129 -7.4894 -0.0014 15 6 2.8287 -8.5262 -0.0005 16 1 3.7201 -8.3014 -0.5861 17 6 3.2320 -8.8648 1.4364 18 6 4.2308 -10.0183 1.4398 19 6 3.5495 -11.3210 1.0309 20 6 3.1841 -11.2762 -0.4546 21 16 1.9690 -9.9531 -0.7252 22 8 1.8328 -9.7398 -2.1234 23 8 0.8123 -10.2322 0.0516 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8904 28 1 2.8719 -3.6044 -0.8895 29 1 0.8538 -5.0446 -0.8902 30 1 0.8534 -5.0451 0.8897 31 1 3.6882 -7.9899 1.8998 32 1 2.3461 -9.1516 2.0029 33 1 4.6476 -10.1298 2.4408 34 1 5.0359 -9.7985 0.7387 35 1 2.6440 -11.4568 1.6222 36 1 4.2266 -12.1558 1.2120 37 1 4.0787 -11.0761 -1.0444 38 1 2.7548 -12.2325 -0.7536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772410727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:30 Heat of formation + Delta-G solvation = -203.059421 kcal Electronic energy + Delta-G solvation = -21215.038962 eV Core-core repulsion = 17762.281358 eV Total energy + Delta-G solvation = -3452.757605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -41.88454 -38.60144 -38.12824 -37.65622 -37.13878 -36.00017 -33.85315 -33.15804 -29.58658 -28.73813 -25.70916 -24.87869 -22.59951 -22.23677 -21.94739 -19.89412 -19.17681 -18.66098 -18.24001 -17.91365 -17.36361 -17.08074 -16.66234 -16.50248 -15.96519 -15.46822 -14.99864 -14.86960 -14.53184 -14.17285 -14.10796 -13.88360 -13.75526 -13.31534 -13.19958 -12.92272 -12.83383 -12.75190 -12.56662 -12.51134 -12.36402 -12.19139 -12.03085 -11.80799 -11.60364 -11.54513 -11.51365 -11.31740 -11.05307 -10.58687 -8.23312 -6.35622 -1.22731 0.75414 1.25528 1.41040 1.44300 1.52400 1.55354 2.39878 2.67711 2.84722 3.10535 3.18181 3.40885 3.67832 3.74817 3.86243 3.90581 3.94694 4.01359 4.25627 4.31700 4.51236 4.65100 4.73148 4.74114 4.83299 4.92430 5.01211 5.12812 5.19708 5.22745 5.36098 5.45138 5.59217 5.77176 6.14984 6.29408 6.80126 7.34171 8.88859 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.037822 B = 0.002894 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.133991 B = 9671.438735 C =10010.650647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.069 3.931 12 O -0.340 6.340 13 C 0.476 3.524 14 O -0.534 6.534 15 C -0.574 4.574 16 H 0.204 0.796 17 C -0.107 4.107 18 C -0.134 4.134 19 C -0.121 4.121 20 C -0.559 4.559 21 S 2.408 3.592 22 O -0.980 6.980 23 O -0.959 6.959 24 H 0.265 0.735 25 H -0.005 1.005 26 H -0.003 1.003 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.176 0.824 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.814 -26.769 2.961 30.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.086 0.914 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.004 4.004 12 O -0.255 6.255 13 C 0.319 3.681 14 O -0.424 6.424 15 C -0.680 4.680 16 H 0.222 0.778 17 C -0.145 4.145 18 C -0.171 4.171 19 C -0.160 4.160 20 C -0.694 4.694 21 S 2.592 3.408 22 O -0.977 6.977 23 O -0.956 6.956 24 H 0.074 0.926 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.194 0.806 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 13.438 -26.623 2.557 29.932 hybrid contribution -0.031 1.460 0.071 1.462 sum 13.407 -25.163 2.627 28.632 Atomic orbital electron populations 1.70104 1.07988 1.28072 1.51312 1.26051 0.95792 1.03667 0.94509 0.85408 0.78159 0.77569 0.79362 1.18998 1.21006 1.18845 1.21592 0.93824 0.91732 1.51116 0.91417 1.18943 0.94297 0.92554 0.95460 1.21474 0.98749 0.89810 1.02946 1.23346 0.91175 0.83634 1.02247 1.86458 1.41694 1.14724 1.82667 1.23071 0.87633 0.85510 0.71911 1.90829 1.17980 1.86990 1.46628 1.30708 1.13518 1.09269 1.14471 0.77839 1.21541 1.02139 1.03073 0.87737 1.21794 0.97753 0.90861 1.06710 1.21554 1.03750 1.00966 0.89701 1.30069 1.16273 1.15104 1.07930 1.08574 0.78699 0.79385 0.74178 1.93543 1.86870 1.85662 1.31663 1.93541 1.46644 1.83237 1.72147 0.92648 0.98667 0.98443 0.90888 0.91196 0.91863 0.91389 0.87938 0.90305 0.86842 0.87490 0.90218 0.85425 0.80598 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.84 5.53 30.60 0.17 -3.67 16 11 C 0.07 2.67 5.47 71.98 0.39 3.06 16 12 O -0.34 -11.24 10.22 -51.48 -0.53 -11.77 16 13 C 0.48 14.94 7.09 71.23 0.51 15.45 16 14 O -0.53 -21.26 15.23 27.17 0.41 -20.84 16 15 C -0.57 -10.46 2.91 29.86 0.09 -10.37 16 16 H 0.20 1.95 8.14 -2.39 -0.02 1.93 16 17 C -0.11 -1.29 5.00 30.47 0.15 -1.13 16 18 C -0.13 -0.39 5.63 30.32 0.17 -0.22 16 19 C -0.12 -0.35 5.73 30.47 0.17 -0.18 16 20 C -0.56 -2.80 6.35 71.99 0.46 -2.34 16 21 S 2.41 49.39 4.31 -56.49 -0.24 49.15 16 22 O -0.98 -28.39 18.10 -127.38 -2.31 -30.70 16 23 O -0.96 -28.48 17.08 -121.18 -2.07 -30.55 16 24 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 25 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 30 H 0.07 2.64 8.13 -2.38 -0.02 2.62 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.17 8.02 -2.39 -0.02 1.15 16 33 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 34 H 0.11 -0.17 8.09 -2.39 -0.02 -0.19 16 35 H 0.08 0.44 8.02 -2.39 -0.02 0.43 16 36 H 0.13 -0.32 8.14 -2.38 -0.02 -0.34 16 37 H 0.18 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.16 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -86.69 330.22 1.57 -85.12 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: 1.04 Total: -0.98 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 2.95 Total: -28.27 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.28 Total: -57.18 kcal Atomic # 8 Polarization: -89.37 SS G_CDS: -4.49 Total: -93.86 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 49.39 SS G_CDS: -0.24 Total: 49.15 kcal Total: -86.69 1.57 -85.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772410727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.942 kcal (2) G-P(sol) polarization free energy of solvation -86.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds