Wall clock time and date at job start Tue Mar 31 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99405 * 2 1 4 4 H 1.48495 * 109.47274 * 269.99613 * 3 2 1 5 5 H 1.48499 * 109.47602 * 29.99816 * 3 2 1 6 6 H 1.48512 * 109.47031 * 149.99792 * 3 2 1 7 7 C 1.37873 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99744 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00054 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00402 * 179.97438 * 10 9 7 12 12 O 1.21561 * 119.99719 * 0.02562 * 11 10 9 13 13 C 1.47748 * 120.00041 * 180.02562 * 11 10 9 14 14 C 1.40585 * 126.04604 * 180.02562 * 13 11 10 15 15 N 1.31258 * 106.63000 * 179.74149 * 14 13 11 16 16 N 1.40110 * 107.17772 * 0.42147 * 15 14 13 17 17 C 1.40164 * 125.56984 * 179.82172 * 16 15 14 18 18 C 1.38856 * 120.03988 * 359.69299 * 17 16 15 19 19 C 1.38082 * 119.95631 * 180.02562 * 18 17 16 20 20 C 1.38500 * 120.04330 * 0.03021 * 19 18 17 21 21 F 1.35104 * 119.95980 * 179.97438 * 20 19 18 22 22 C 1.38506 * 120.08598 * 0.22618 * 20 19 18 23 23 C 1.38091 * 120.03723 * 359.49243 * 22 20 19 24 24 N 1.28716 * 108.86079 * 359.55947 * 16 15 14 25 25 H 0.97001 * 120.00330 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46959 * 60.00535 * 9 7 2 27 27 H 1.08997 * 109.47277 * 300.00153 * 9 7 2 28 28 H 0.97008 * 119.99628 * 0.02562 * 10 9 7 29 29 H 1.07998 * 126.68513 * 0.05940 * 14 13 11 30 30 H 1.08001 * 120.02604 * 0.02562 * 18 17 16 31 31 H 1.08000 * 119.98162 * 180.02562 * 19 18 17 32 32 H 1.07995 * 119.97903 * 179.75264 * 22 20 19 33 33 H 1.07998 * 120.01673 * 180.27408 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0000 -2.5750 0.0022 11 6 5.3251 -2.8213 0.0024 12 8 6.1150 -1.8972 0.0021 13 6 5.8177 -4.2142 0.0029 14 6 7.1651 -4.6152 0.0037 15 7 7.1664 -5.9278 0.0096 16 7 5.8283 -6.3430 0.0028 17 6 5.3874 -7.6735 0.0024 18 6 6.3098 -8.7114 0.0028 19 6 5.8735 -10.0215 0.0019 20 6 4.5170 -10.3006 0.0000 21 9 4.0920 -11.5831 -0.0015 22 6 3.5954 -9.2667 -0.0058 23 6 4.0278 -7.9552 0.0010 24 7 5.0699 -5.3029 0.0025 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6799 0.8912 27 1 3.8752 -0.6802 -0.8888 28 1 3.3697 -3.3124 0.0021 29 1 8.0305 -3.9692 0.0048 30 1 7.3677 -8.4942 0.0038 31 1 6.5906 -10.8291 0.0026 32 1 2.5380 -9.4863 -0.0113 33 1 3.3088 -7.1493 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787627779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:42 Heat of formation + Delta-G solvation = 59.054957 kcal Electronic energy + Delta-G solvation = -21130.789960 eV Core-core repulsion = 17495.079734 eV Total energy + Delta-G solvation = -3635.710226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -49.31453 -42.81020 -39.52673 -38.73825 -34.49831 -33.91430 -32.78353 -32.23048 -31.58067 -29.64571 -27.95370 -24.97153 -24.11292 -22.92261 -21.75238 -21.63905 -20.03744 -18.74507 -17.97737 -17.66454 -16.62921 -16.57981 -16.22681 -15.96650 -15.27638 -15.15442 -14.67933 -14.51945 -14.27183 -14.10870 -13.61519 -13.45785 -13.16009 -12.99737 -12.44954 -12.27418 -12.10845 -11.69780 -11.13714 -11.07813 -10.90066 -10.81463 -10.27704 -10.02240 -9.72316 -9.70264 -9.52481 -8.82310 -8.56083 -8.24781 -6.23736 -4.26799 0.11441 0.66626 1.44904 1.66263 1.79195 3.07747 3.25051 3.31925 3.39263 3.45009 3.57954 3.75839 3.78665 4.27386 4.29393 4.30933 4.62833 4.73493 4.80411 4.98814 5.11238 5.33375 5.38597 5.42962 5.57951 5.61302 5.67958 5.92795 6.11998 6.53744 6.71275 6.99432 7.05389 7.30548 7.57958 8.05419 8.41652 8.63632 8.78297 9.34967 10.88094 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022717 B = 0.003232 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.262053 B = 8661.626562 C = 9878.741838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.219 3.781 10 N -0.683 5.683 11 C 0.588 3.412 12 O -0.543 6.543 13 C -0.036 4.036 14 C 0.081 3.919 15 N -0.283 5.283 16 N -0.170 5.170 17 C 0.152 3.848 18 C -0.081 4.081 19 C -0.134 4.134 20 C 0.099 3.901 21 F -0.134 7.134 22 C -0.130 4.130 23 C -0.082 4.082 24 N -0.202 5.202 25 H 0.268 0.732 26 H 0.031 0.969 27 H 0.026 0.974 28 H 0.404 0.596 29 H 0.220 0.780 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.600 -19.795 0.020 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.097 3.903 10 N -0.331 5.331 11 C 0.369 3.631 12 O -0.420 6.420 13 C -0.204 4.204 14 C -0.110 4.110 15 N -0.110 5.110 16 N -0.061 5.061 17 C 0.060 3.940 18 C -0.102 4.102 19 C -0.153 4.153 20 C 0.079 3.921 21 F -0.113 7.113 22 C -0.149 4.149 23 C -0.103 4.103 24 N -0.045 5.045 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.238 0.762 29 H 0.236 0.764 30 H 0.169 0.831 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.594 -20.271 0.028 23.352 hybrid contribution 0.206 1.190 -0.024 1.208 sum 11.800 -19.080 0.004 22.434 Atomic orbital electron populations 1.69875 1.06226 1.27489 1.49187 1.24783 0.94798 0.99153 0.93801 0.86824 0.80611 0.83206 0.79107 1.19776 1.20868 1.18382 1.21060 0.88313 0.95371 1.53607 0.90114 1.19625 0.95542 0.77859 0.97241 1.46116 1.05015 1.11785 1.70190 1.16758 0.83664 0.84293 0.78354 1.90780 1.55747 1.43256 1.52177 1.23392 0.91511 0.94216 1.11249 1.25179 0.98424 0.91303 0.96118 1.77977 0.97839 1.13059 1.22142 1.48192 1.01395 1.04166 1.52381 1.17360 0.93561 0.77919 1.05116 1.20745 1.00493 0.89999 0.98978 1.21004 0.94260 0.97152 1.02917 1.17804 0.92809 0.78913 1.02599 1.91532 1.90606 1.35422 1.93722 1.21064 1.00781 0.90799 1.02295 1.20904 0.93424 0.97553 0.98384 1.73818 1.24413 0.93864 1.12409 0.92195 0.95151 0.95597 0.76168 0.76369 0.83108 0.83412 0.83168 0.82711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.55 -14.75 9.83 -34.44 -0.34 -15.08 16 8 H 0.08 2.28 7.84 -52.48 -0.41 1.87 16 9 C 0.22 5.26 4.50 -5.20 -0.02 5.23 16 10 N -0.68 -14.00 5.55 -62.46 -0.35 -14.35 16 11 C 0.59 11.27 7.83 -12.37 -0.10 11.17 16 12 O -0.54 -11.65 16.90 5.31 0.09 -11.56 16 13 C -0.04 -0.56 7.09 -82.99 -0.59 -1.15 16 14 C 0.08 1.07 11.91 -16.91 -0.20 0.87 16 15 N -0.28 -3.71 11.90 30.85 0.37 -3.34 16 16 N -0.17 -2.29 4.44 32.49 0.14 -2.15 16 17 C 0.15 1.68 6.74 -83.59 -0.56 1.12 16 18 C -0.08 -0.71 9.65 -39.41 -0.38 -1.09 16 19 C -0.13 -0.98 10.02 -39.54 -0.40 -1.38 16 20 C 0.10 0.81 7.30 -39.39 -0.29 0.53 16 21 F -0.13 -1.18 17.27 2.25 0.04 -1.14 16 22 C -0.13 -1.05 10.02 -39.54 -0.40 -1.45 16 23 C -0.08 -0.80 9.61 -39.41 -0.38 -1.17 16 24 N -0.20 -3.04 10.95 33.29 0.36 -2.67 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 27 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 28 H 0.40 7.66 8.02 -40.82 -0.33 7.33 16 29 H 0.22 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.15 1.20 7.67 -52.49 -0.40 0.80 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.16 1.52 7.67 -52.49 -0.40 1.12 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -31.56 307.59 -5.10 -36.65 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -2.75 Total: 3.34 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.75 Total: -0.33 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 1.30 Total: -47.85 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.56 -5.10 -36.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.709 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds