Wall clock time and date at job start Tue Mar 31 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99405 * 2 1 4 4 H 1.48495 * 109.47274 * 269.99613 * 3 2 1 5 5 H 1.48499 * 109.47602 * 29.99816 * 3 2 1 6 6 H 1.48512 * 109.47031 * 149.99792 * 3 2 1 7 7 C 1.37873 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99744 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00054 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00402 * 179.97438 * 10 9 7 12 12 O 1.21561 * 119.99719 * 0.02562 * 11 10 9 13 13 C 1.47748 * 120.00041 * 180.02562 * 11 10 9 14 14 C 1.40585 * 126.04604 * 180.02562 * 13 11 10 15 15 N 1.31258 * 106.63000 * 179.74149 * 14 13 11 16 16 N 1.40110 * 107.17772 * 0.42147 * 15 14 13 17 17 C 1.40164 * 125.56984 * 179.82172 * 16 15 14 18 18 C 1.38856 * 120.03988 * 359.69299 * 17 16 15 19 19 C 1.38082 * 119.95631 * 180.02562 * 18 17 16 20 20 C 1.38500 * 120.04330 * 0.03021 * 19 18 17 21 21 F 1.35104 * 119.95980 * 179.97438 * 20 19 18 22 22 C 1.38506 * 120.08598 * 0.22618 * 20 19 18 23 23 C 1.38091 * 120.03723 * 359.49243 * 22 20 19 24 24 N 1.28716 * 108.86079 * 359.55947 * 16 15 14 25 25 H 0.97001 * 120.00330 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46959 * 60.00535 * 9 7 2 27 27 H 1.08997 * 109.47277 * 300.00153 * 9 7 2 28 28 H 0.97008 * 119.99628 * 0.02562 * 10 9 7 29 29 H 1.07998 * 126.68513 * 0.05940 * 14 13 11 30 30 H 1.08001 * 120.02604 * 0.02562 * 18 17 16 31 31 H 1.08000 * 119.98162 * 180.02562 * 19 18 17 32 32 H 1.07995 * 119.97903 * 179.75264 * 22 20 19 33 33 H 1.07998 * 120.01673 * 180.27408 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0000 -2.5750 0.0022 11 6 5.3251 -2.8213 0.0024 12 8 6.1150 -1.8972 0.0021 13 6 5.8177 -4.2142 0.0029 14 6 7.1651 -4.6152 0.0037 15 7 7.1664 -5.9278 0.0096 16 7 5.8283 -6.3430 0.0028 17 6 5.3874 -7.6735 0.0024 18 6 6.3098 -8.7114 0.0028 19 6 5.8735 -10.0215 0.0019 20 6 4.5170 -10.3006 0.0000 21 9 4.0920 -11.5831 -0.0015 22 6 3.5954 -9.2667 -0.0058 23 6 4.0278 -7.9552 0.0010 24 7 5.0699 -5.3029 0.0025 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6799 0.8912 27 1 3.8752 -0.6802 -0.8888 28 1 3.3697 -3.3124 0.0021 29 1 8.0305 -3.9692 0.0048 30 1 7.3677 -8.4942 0.0038 31 1 6.5906 -10.8291 0.0026 32 1 2.5380 -9.4863 -0.0113 33 1 3.3088 -7.1493 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787627779.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:42 Heat of formation + Delta-G solvation = 37.288842 kcal Electronic energy + Delta-G solvation = -21131.733810 eV Core-core repulsion = 17495.079734 eV Total energy + Delta-G solvation = -3636.654076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.00211 -43.89332 -40.56522 -40.01501 -36.27523 -34.87644 -34.51842 -33.57098 -32.32187 -30.77747 -29.65057 -26.16787 -24.98746 -24.25685 -23.08199 -22.63465 -21.53331 -19.79593 -19.27060 -18.66213 -18.06496 -17.66502 -17.31057 -16.99115 -16.67342 -16.21290 -16.10638 -15.94806 -15.44215 -14.95047 -14.75077 -14.41993 -14.28632 -14.22457 -14.19565 -13.69319 -13.31048 -13.01319 -12.68360 -12.54298 -12.04628 -11.90372 -11.90040 -11.66697 -11.32517 -11.30920 -10.90570 -10.35894 -10.05883 -9.37214 -8.38053 -6.46301 -0.77122 0.01175 0.41251 0.69554 0.70983 1.37318 1.39040 1.51494 2.12021 2.16612 2.30961 2.37979 2.54195 2.97431 3.08083 3.54136 3.63093 3.65779 3.82051 3.99851 4.09994 4.31104 4.45880 4.74474 4.78239 4.78812 4.90446 4.93508 5.02356 5.10151 5.23757 5.33668 5.36921 5.70714 6.04960 6.44582 6.54284 6.73120 7.06320 7.23235 8.76764 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022717 B = 0.003232 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.262053 B = 8661.626562 C = 9878.741838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.940 3.060 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.231 3.769 10 N -0.690 5.690 11 C 0.596 3.404 12 O -0.566 6.566 13 C -0.061 4.061 14 C 0.090 3.910 15 N -0.282 5.282 16 N -0.160 5.160 17 C 0.117 3.883 18 C -0.074 4.074 19 C -0.123 4.123 20 C 0.100 3.900 21 F -0.135 7.135 22 C -0.127 4.127 23 C -0.087 4.087 24 N -0.207 5.207 25 H 0.273 0.727 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.409 0.591 29 H 0.247 0.753 30 H 0.161 0.839 31 H 0.178 0.822 32 H 0.169 0.831 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.283 -21.087 -0.007 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.763 3.237 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.588 4.588 8 H 0.073 0.927 9 C 0.108 3.892 10 N -0.338 5.338 11 C 0.380 3.620 12 O -0.445 6.445 13 C -0.227 4.227 14 C -0.101 4.101 15 N -0.109 5.109 16 N -0.053 5.053 17 C 0.027 3.973 18 C -0.095 4.095 19 C -0.142 4.142 20 C 0.080 3.920 21 F -0.114 7.114 22 C -0.146 4.146 23 C -0.108 4.108 24 N -0.053 5.053 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.245 0.755 29 H 0.263 0.737 30 H 0.178 0.822 31 H 0.195 0.805 32 H 0.186 0.814 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.293 -21.591 0.000 25.355 hybrid contribution -0.370 1.309 -0.015 1.360 sum 12.923 -20.282 -0.015 24.049 Atomic orbital electron populations 1.69988 1.07861 1.28702 1.50536 1.25632 0.95567 1.02844 0.93393 0.85819 0.79458 0.78831 0.79602 1.18829 1.20045 1.17689 1.21261 0.89952 0.94577 1.53045 0.92662 1.19270 0.93466 0.79813 0.96689 1.45956 1.06002 1.10590 1.71242 1.16967 0.82649 0.85535 0.76890 1.90752 1.56087 1.44596 1.53036 1.22860 0.92735 0.92701 1.14397 1.25588 0.98082 0.91442 0.94954 1.77981 0.97583 1.12896 1.22451 1.48461 1.01450 1.04629 1.50749 1.17790 0.94592 0.77288 1.07673 1.20894 1.00602 0.89886 0.98112 1.21279 0.94449 0.97259 1.01180 1.17954 0.93286 0.78766 1.01979 1.91538 1.90682 1.35499 1.93653 1.21230 1.01890 0.90057 1.01446 1.20928 0.93013 0.98144 0.98730 1.73759 1.24949 0.94280 1.12293 0.91820 0.95763 0.95869 0.75543 0.73684 0.82159 0.80502 0.81387 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.96 21.45 0.30 -55.21 16 2 C 0.03 1.45 5.47 84.65 0.46 1.92 16 3 Si 0.94 43.02 27.47 68.60 1.88 44.90 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 7 C -0.55 -30.34 9.83 25.60 0.25 -30.09 16 8 H 0.06 3.24 7.84 -2.91 -0.02 3.22 16 9 C 0.23 11.13 4.50 85.63 0.38 11.51 16 10 N -0.69 -28.59 5.55 -469.81 -2.61 -31.20 16 11 C 0.60 22.79 7.83 86.76 0.68 23.47 16 12 O -0.57 -24.09 16.90 -3.91 -0.07 -24.16 16 13 C -0.06 -1.91 7.09 42.20 0.30 -1.61 16 14 C 0.09 2.24 11.91 85.35 1.02 3.25 16 15 N -0.28 -6.94 11.90 -56.32 -0.67 -7.61 16 16 N -0.16 -4.16 4.44 -51.13 -0.23 -4.39 16 17 C 0.12 2.44 6.74 38.10 0.26 2.70 16 18 C -0.07 -1.13 9.65 22.38 0.22 -0.92 16 19 C -0.12 -1.43 10.02 22.30 0.22 -1.21 16 20 C 0.10 1.40 7.30 22.40 0.16 1.56 16 21 F -0.14 -2.04 17.27 44.97 0.78 -1.26 16 22 C -0.13 -1.84 10.02 22.30 0.22 -1.61 16 23 C -0.09 -1.62 9.61 22.38 0.22 -1.41 16 24 N -0.21 -6.19 10.95 -48.60 -0.53 -6.72 16 25 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 26 H 0.02 1.21 7.20 -2.39 -0.02 1.19 16 27 H 0.02 1.14 7.57 -2.39 -0.02 1.12 16 28 H 0.41 15.94 8.02 -92.70 -0.74 15.19 16 29 H 0.25 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.16 2.13 7.67 -2.91 -0.02 2.11 16 31 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.15 2.92 7.67 -2.91 -0.02 2.90 16 Total: -1.00 -67.50 307.59 3.63 -63.87 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.38 Total: 14.20 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 4.39 Total: 7.57 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.74 Total: -105.13 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.07 Total: -24.16 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Total: -67.50 3.63 -63.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627779.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.158 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds