Wall clock time and date at job start Tue Mar 31 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00155 * 2 1 4 4 O 1.20830 * 119.99413 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00598 * 179.97438 * 3 2 1 6 6 O 1.45202 * 115.54780 * 324.90197 * 5 3 2 7 7 C 1.34698 * 117.00211 * 294.32943 * 6 5 3 8 8 O 1.21468 * 120.00067 * 357.97715 * 7 6 5 9 9 C 1.47773 * 120.00275 * 177.97437 * 7 6 5 10 10 C 1.39970 * 120.02758 * 359.97438 * 9 7 6 11 11 C 1.38313 * 120.35242 * 180.02562 * 10 9 7 12 12 C 1.37762 * 120.41874 * 359.97438 * 11 10 9 13 13 C 1.40749 * 120.05027 * 359.97438 * 12 11 10 14 14 C 1.41437 * 120.17527 * 180.27647 * 13 12 11 15 15 H 1.08008 * 120.00033 * 156.45441 * 14 13 12 16 16 C 1.39934 * 120.00139 * 336.45005 * 14 13 12 17 17 N 1.30824 * 120.00117 * 157.26475 * 16 14 13 18 18 Si 1.86804 * 119.99854 * 337.26078 * 16 14 13 19 19 H 1.48495 * 109.46936 * 88.87143 * 18 16 14 20 20 H 1.48499 * 109.47005 * 208.86806 * 18 16 14 21 21 H 1.48498 * 109.46902 * 328.87106 * 18 16 14 22 22 C 1.39048 * 120.03220 * 179.97438 * 9 7 6 23 23 C 1.52994 * 117.50139 * 110.57306 * 5 3 2 24 24 C 1.52999 * 117.50348 * 179.23374 * 5 3 2 25 25 H 1.09000 * 109.46891 * 60.00683 * 1 2 3 26 26 H 1.09007 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47454 * 300.00194 * 1 2 3 28 28 H 1.07996 * 119.82220 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.79210 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.97702 * 180.02562 * 12 11 10 31 31 H 0.97006 * 119.99763 * 180.02562 * 17 16 14 32 32 H 1.08005 * 120.20622 * 0.02562 * 22 9 7 33 33 H 1.09001 * 117.50278 * 215.00411 * 23 5 3 34 34 H 1.08999 * 117.49766 * 0.02562 * 23 5 3 35 35 H 1.09003 * 117.49407 * 359.97438 * 24 5 3 36 36 H 1.08998 * 117.49928 * 144.99169 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 8 4.2475 0.2376 0.7543 7 6 4.0647 0.2312 2.0888 8 8 3.3854 1.0910 2.6129 9 6 4.6905 -0.8219 2.9153 10 6 5.4729 -1.8134 2.3119 11 6 6.0613 -2.8026 3.0790 12 6 5.8849 -2.8234 4.4451 13 6 5.1025 -1.8343 5.0700 14 6 4.9244 -1.8498 6.4730 15 1 4.6712 -0.9390 6.9953 16 6 5.0762 -3.0452 7.1844 17 7 5.3554 -3.0151 8.4621 18 14 4.8799 -4.6841 6.3095 19 1 6.1902 -5.1093 5.7553 20 1 4.3954 -5.7047 7.2733 21 1 3.8980 -4.5409 5.2047 22 6 4.5026 -0.8288 4.2930 23 6 4.2473 1.7880 -1.2698 24 6 4.2007 2.6671 -0.0176 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 5.6171 -1.8065 1.2417 29 1 6.6628 -3.5634 2.6040 30 1 6.3480 -3.5989 5.0373 31 1 5.4610 -3.8439 8.9551 32 1 3.8994 -0.0661 4.7630 33 1 5.2067 1.3467 -1.5398 34 1 3.6068 2.0687 -2.1058 35 1 3.5295 3.5259 -0.0304 36 1 5.1294 2.8042 0.5363 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788067300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:17 Heat of formation + Delta-G solvation = -110.928211 kcal Electronic energy + Delta-G solvation = -22575.555358 eV Core-core repulsion = 18991.348912 eV Total energy + Delta-G solvation = -3584.206447 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04344 -39.77421 -37.95706 -37.16639 -36.37377 -34.79899 -33.79239 -30.81207 -30.14219 -28.28940 -25.54969 -24.80322 -23.70691 -22.89017 -21.22090 -20.69213 -19.92030 -18.42067 -17.72310 -17.15013 -16.58002 -16.32283 -16.10720 -15.50650 -15.17110 -14.73761 -14.63045 -14.06429 -13.78586 -13.39512 -13.18873 -12.84083 -12.70103 -12.31959 -12.12173 -11.87908 -11.79488 -11.57263 -11.49873 -11.15814 -10.93816 -10.91118 -10.65123 -10.55441 -10.28303 -10.11857 -9.92457 -9.65703 -9.22408 -8.01844 -7.89904 -7.12892 -4.62085 1.60969 1.87074 2.41856 2.47053 2.52355 2.98956 3.11246 3.14815 3.30086 3.56490 3.84325 4.28223 4.36542 4.40917 4.53400 4.89522 4.98965 5.09166 5.24401 5.25364 5.39478 5.50337 5.57638 5.76676 5.87160 6.12456 6.18605 6.27805 6.54512 6.59777 6.60351 6.88129 7.10651 7.35935 7.44874 7.55474 7.65919 7.83226 8.17337 8.19588 8.44334 8.61450 9.88321 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.004083 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.293179 B = 6855.868723 C = 7082.876411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.345 6.345 3 C 0.497 3.503 4 O -0.494 6.494 5 C 0.028 3.972 6 O -0.302 6.302 7 C 0.509 3.491 8 O -0.507 6.507 9 C -0.090 4.090 10 C -0.200 4.200 11 C -0.082 4.082 12 C -0.228 4.228 13 C 0.080 3.920 14 C -0.438 4.438 15 H 0.094 0.906 16 C 0.084 3.916 17 N -0.792 5.792 18 Si 0.915 3.085 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.246 1.246 22 C -0.138 4.138 23 C -0.122 4.122 24 C -0.145 4.145 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.289 0.711 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 2.938 -15.946 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.260 6.260 3 C 0.339 3.661 4 O -0.381 6.381 5 C -0.011 4.011 6 O -0.219 6.219 7 C 0.356 3.644 8 O -0.395 6.395 9 C -0.091 4.091 10 C -0.220 4.220 11 C -0.101 4.101 12 C -0.247 4.247 13 C 0.077 3.923 14 C -0.465 4.465 15 H 0.112 0.888 16 C -0.137 4.137 17 N -0.415 5.415 18 Si 0.742 3.258 19 H -0.191 1.191 20 H -0.217 1.217 21 H -0.170 1.170 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.182 4.182 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.216 3.428 -15.495 16.192 hybrid contribution -0.350 -0.714 -0.061 0.797 sum -3.566 2.714 -15.555 16.188 Atomic orbital electron populations 1.23345 0.75862 1.04080 1.02588 1.86554 1.23676 1.32433 1.83374 1.22431 0.89632 0.81851 0.72172 1.90660 1.65796 1.36390 1.45287 1.21581 0.85057 0.92556 1.01944 1.86729 1.65077 1.49147 1.20960 1.22080 0.77895 0.84571 0.79840 1.90800 1.37796 1.37869 1.73017 1.18677 1.02753 0.95158 0.92537 1.20569 1.04949 0.98018 0.98427 1.20557 0.98481 0.97204 0.93826 1.21394 1.05385 1.03271 0.94690 1.17600 0.90293 0.91024 0.93381 1.19531 1.39661 0.97137 0.90181 0.88784 1.26221 0.90534 1.02129 0.94796 1.69715 1.30728 1.31517 1.09503 0.86360 0.80275 0.79517 0.79666 1.19076 1.21681 1.16964 1.21190 1.02345 1.01708 0.90468 1.23474 1.02714 0.99208 0.90490 1.23638 1.03000 0.92134 0.99436 0.91825 0.87714 0.91576 0.87276 0.87932 0.87234 0.90062 0.86588 0.85796 0.86531 0.86144 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.34 -5.41 10.53 -41.51 -0.44 -5.85 16 3 C 0.50 8.14 6.76 36.00 0.24 8.38 16 4 O -0.49 -8.55 16.01 -18.75 -0.30 -8.85 16 5 C 0.03 0.42 2.10 -91.78 -0.19 0.23 16 6 O -0.30 -5.32 9.60 -42.75 -0.41 -5.73 16 7 C 0.51 10.53 7.72 34.63 0.27 10.80 16 8 O -0.51 -11.41 15.60 -19.24 -0.30 -11.71 16 9 C -0.09 -1.98 5.87 -105.05 -0.62 -2.59 16 10 C -0.20 -4.06 9.62 -38.91 -0.37 -4.43 16 11 C -0.08 -1.69 10.01 -39.73 -0.40 -2.09 16 12 C -0.23 -5.26 7.43 -38.81 -0.29 -5.55 16 13 C 0.08 1.99 5.22 -106.87 -0.56 1.43 16 14 C -0.44 -11.50 9.56 -37.73 -0.36 -11.86 16 15 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 16 C 0.08 2.12 5.37 -17.35 -0.09 2.03 16 17 N -0.79 -20.23 13.93 55.55 0.77 -19.46 16 18 Si 0.92 19.82 24.66 -169.99 -4.19 15.63 16 19 H -0.26 -5.47 6.26 56.52 0.35 -5.12 16 20 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.25 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.14 -3.29 9.34 -38.42 -0.36 -3.64 16 23 C -0.12 -1.21 10.19 -26.70 -0.27 -1.48 16 24 C -0.15 -1.75 9.99 -26.70 -0.27 -2.02 16 25 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 28 H 0.11 1.95 7.59 -52.49 -0.40 1.55 16 29 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.11 2.49 4.00 -52.48 -0.21 2.28 16 31 H 0.29 6.62 8.30 -40.82 -0.34 6.28 16 32 H 0.12 2.78 7.64 -52.48 -0.40 2.38 16 33 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.12 1.41 7.67 -51.93 -0.40 1.01 16 36 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -29.98 320.68 -6.21 -36.19 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.97 Total: 4.29 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.20 Total: -9.34 kcal Atomic # 7 Polarization: -20.23 SS G_CDS: 0.77 Total: -19.46 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.45 Total: -32.14 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.19 Total: 15.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.98 -6.21 -36.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788067300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.742 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds