Wall clock time and date at job start Tue Mar 31 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00155 * 2 1 4 4 O 1.20830 * 119.99413 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00598 * 179.97438 * 3 2 1 6 6 O 1.45202 * 115.54780 * 324.90197 * 5 3 2 7 7 C 1.34698 * 117.00211 * 294.32943 * 6 5 3 8 8 O 1.21468 * 120.00067 * 357.97715 * 7 6 5 9 9 C 1.47773 * 120.00275 * 177.97437 * 7 6 5 10 10 C 1.39970 * 120.02758 * 359.97438 * 9 7 6 11 11 C 1.38313 * 120.35242 * 180.02562 * 10 9 7 12 12 C 1.37762 * 120.41874 * 359.97438 * 11 10 9 13 13 C 1.40749 * 120.05027 * 359.97438 * 12 11 10 14 14 C 1.41437 * 120.17527 * 180.27647 * 13 12 11 15 15 H 1.08008 * 120.00033 * 156.45441 * 14 13 12 16 16 C 1.39934 * 120.00139 * 336.45005 * 14 13 12 17 17 N 1.30824 * 120.00117 * 157.26475 * 16 14 13 18 18 Si 1.86804 * 119.99854 * 337.26078 * 16 14 13 19 19 H 1.48495 * 109.46936 * 88.87143 * 18 16 14 20 20 H 1.48499 * 109.47005 * 208.86806 * 18 16 14 21 21 H 1.48498 * 109.46902 * 328.87106 * 18 16 14 22 22 C 1.39048 * 120.03220 * 179.97438 * 9 7 6 23 23 C 1.52994 * 117.50139 * 110.57306 * 5 3 2 24 24 C 1.52999 * 117.50348 * 179.23374 * 5 3 2 25 25 H 1.09000 * 109.46891 * 60.00683 * 1 2 3 26 26 H 1.09007 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47454 * 300.00194 * 1 2 3 28 28 H 1.07996 * 119.82220 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.79210 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.97702 * 180.02562 * 12 11 10 31 31 H 0.97006 * 119.99763 * 180.02562 * 17 16 14 32 32 H 1.08005 * 120.20622 * 0.02562 * 22 9 7 33 33 H 1.09001 * 117.50278 * 215.00411 * 23 5 3 34 34 H 1.08999 * 117.49766 * 0.02562 * 23 5 3 35 35 H 1.09003 * 117.49407 * 359.97438 * 24 5 3 36 36 H 1.08998 * 117.49928 * 144.99169 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 8 4.2475 0.2376 0.7543 7 6 4.0647 0.2312 2.0888 8 8 3.3854 1.0910 2.6129 9 6 4.6905 -0.8219 2.9153 10 6 5.4729 -1.8134 2.3119 11 6 6.0613 -2.8026 3.0790 12 6 5.8849 -2.8234 4.4451 13 6 5.1025 -1.8343 5.0700 14 6 4.9244 -1.8498 6.4730 15 1 4.6712 -0.9390 6.9953 16 6 5.0762 -3.0452 7.1844 17 7 5.3554 -3.0151 8.4621 18 14 4.8799 -4.6841 6.3095 19 1 6.1902 -5.1093 5.7553 20 1 4.3954 -5.7047 7.2733 21 1 3.8980 -4.5409 5.2047 22 6 4.5026 -0.8288 4.2930 23 6 4.2473 1.7880 -1.2698 24 6 4.2007 2.6671 -0.0176 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 5.6171 -1.8065 1.2417 29 1 6.6628 -3.5634 2.6040 30 1 6.3480 -3.5989 5.0373 31 1 5.4610 -3.8439 8.9551 32 1 3.8994 -0.0661 4.7630 33 1 5.2067 1.3467 -1.5398 34 1 3.6068 2.0687 -2.1058 35 1 3.5295 3.5259 -0.0304 36 1 5.1294 2.8042 0.5363 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788067300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:16 Heat of formation + Delta-G solvation = -127.810641 kcal Electronic energy + Delta-G solvation = -22576.287436 eV Core-core repulsion = 18991.348912 eV Total energy + Delta-G solvation = -3584.938524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.103 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.29646 -41.20551 -39.54148 -38.52204 -37.69585 -36.05712 -35.61679 -32.62096 -31.88745 -29.28393 -27.34368 -26.15523 -25.14255 -23.77388 -22.79422 -22.38894 -21.22203 -19.93267 -19.29880 -18.35200 -18.08666 -17.71342 -17.50751 -17.05708 -16.55778 -16.49431 -15.81204 -15.52208 -15.31977 -14.65532 -14.57022 -14.46005 -14.10772 -13.88790 -13.51926 -13.32817 -12.97461 -12.91277 -12.78963 -12.70118 -12.53678 -12.35310 -12.00203 -11.88874 -11.78581 -11.52615 -11.45929 -11.37170 -10.96479 -9.77074 -9.71580 -8.98799 -6.57447 -0.10976 0.67395 0.71021 1.23001 1.25031 1.34246 1.42407 1.46428 1.63413 2.09028 2.51486 2.56522 3.17480 3.37365 3.40995 3.59301 3.69036 4.13620 4.18969 4.20973 4.31957 4.42338 4.49743 4.54775 4.58906 4.71466 4.83361 4.85830 4.95576 5.00330 5.08570 5.13108 5.33832 5.61112 5.66769 5.79411 6.05637 6.24226 6.35895 6.59088 6.62643 6.69002 8.09177 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.004083 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.293179 B = 6855.868723 C = 7082.876411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.491 3.509 4 O -0.515 6.515 5 C -0.019 4.019 6 O -0.291 6.291 7 C 0.514 3.486 8 O -0.535 6.535 9 C -0.099 4.099 10 C -0.172 4.172 11 C -0.079 4.079 12 C -0.230 4.230 13 C 0.067 3.933 14 C -0.483 4.483 15 H 0.053 0.947 16 C 0.049 3.951 17 N -0.834 5.834 18 Si 0.968 3.032 19 H -0.239 1.239 20 H -0.275 1.275 21 H -0.256 1.256 22 C -0.165 4.165 23 C -0.076 4.076 24 C -0.149 4.149 25 H 0.080 0.920 26 H 0.133 0.867 27 H 0.052 0.948 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.116 0.884 31 H 0.299 0.701 32 H 0.094 0.906 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.119 0.881 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 1.210 -19.987 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.334 3.666 4 O -0.404 6.404 5 C -0.058 4.058 6 O -0.208 6.208 7 C 0.361 3.639 8 O -0.425 6.425 9 C -0.100 4.100 10 C -0.191 4.191 11 C -0.096 4.096 12 C -0.249 4.249 13 C 0.064 3.936 14 C -0.511 4.511 15 H 0.071 0.929 16 C -0.167 4.167 17 N -0.458 5.458 18 Si 0.790 3.210 19 H -0.164 1.164 20 H -0.201 1.201 21 H -0.180 1.180 22 C -0.185 4.185 23 C -0.112 4.112 24 C -0.185 4.185 25 H 0.099 0.901 26 H 0.151 0.849 27 H 0.071 0.929 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.134 0.866 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.170 0.830 34 H 0.160 0.840 35 H 0.137 0.863 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.979 1.696 -19.554 19.727 hybrid contribution -0.764 -0.041 0.963 1.230 sum -2.743 1.655 -18.591 18.865 Atomic orbital electron populations 1.23657 0.74034 1.06112 1.02829 1.86532 1.25685 1.32334 1.83116 1.22790 0.90399 0.81774 0.71624 1.90637 1.66407 1.36907 1.46468 1.22185 0.84638 0.93555 1.05416 1.86669 1.64875 1.50253 1.18968 1.21847 0.77231 0.83748 0.81053 1.90789 1.38942 1.38856 1.73942 1.18887 1.02991 0.96185 0.91945 1.21078 1.01810 0.95967 1.00250 1.21056 0.98015 0.97943 0.92625 1.21624 1.04527 1.02514 0.96225 1.17696 0.90926 0.92144 0.92831 1.19480 1.43485 0.96756 0.91412 0.92854 1.26936 0.89725 1.04737 0.95343 1.69734 1.32407 1.32908 1.10779 0.85562 0.80986 0.75784 0.78664 1.16393 1.20124 1.17987 1.21101 1.03582 1.01950 0.91863 1.23808 1.03283 0.95045 0.89033 1.23762 1.02685 0.90805 1.01299 0.90093 0.84866 0.92871 0.83533 0.83171 0.86625 0.89051 0.88762 0.83049 0.84016 0.86287 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -10.92 10.53 -49.27 -0.52 -11.44 16 3 C 0.49 15.56 6.76 71.23 0.48 16.04 16 4 O -0.51 -17.63 16.01 21.95 0.35 -17.28 16 5 C -0.02 -0.53 2.10 -11.54 -0.02 -0.55 16 6 O -0.29 -9.56 9.60 -53.91 -0.52 -10.08 16 7 C 0.51 20.90 7.72 70.34 0.54 21.44 16 8 O -0.53 -24.63 15.60 19.94 0.31 -24.32 16 9 C -0.10 -4.25 5.87 -20.14 -0.12 -4.37 16 10 C -0.17 -6.29 9.62 22.71 0.22 -6.07 16 11 C -0.08 -2.88 10.01 22.17 0.22 -2.65 16 12 C -0.23 -10.16 7.43 22.77 0.17 -9.99 16 13 C 0.07 3.39 5.22 -21.32 -0.11 3.28 16 14 C -0.48 -27.07 9.56 23.47 0.22 -26.84 16 15 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 16 C 0.05 2.57 5.37 85.25 0.46 3.03 16 17 N -0.83 -44.36 13.93 21.82 0.30 -44.06 16 18 Si 0.97 40.12 24.66 68.60 1.69 41.81 16 19 H -0.24 -8.89 6.26 99.48 0.62 -8.27 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 22 C -0.17 -8.19 9.34 23.02 0.21 -7.97 16 23 C -0.08 -1.17 10.19 30.61 0.31 -0.86 16 24 C -0.15 -3.26 9.99 30.62 0.31 -2.95 16 25 H 0.08 1.46 8.13 -2.39 -0.02 1.45 16 26 H 0.13 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.15 4.33 7.59 -2.91 -0.02 4.31 16 29 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 30 H 0.12 4.95 4.00 -2.91 -0.01 4.94 16 31 H 0.30 14.07 8.30 -92.70 -0.77 13.30 16 32 H 0.09 4.94 7.64 -2.91 -0.02 4.91 16 33 H 0.15 1.57 8.14 -2.39 -0.02 1.56 16 34 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.12 2.63 7.67 -2.39 -0.02 2.61 16 36 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -69.38 320.68 6.74 -62.64 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.03 Total: 19.42 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.09 Total: -16.70 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.30 Total: -44.06 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -0.37 Total: -63.11 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.69 Total: 41.81 kcal Total: -69.38 6.74 -62.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788067300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.169 kcal (2) G-P(sol) polarization free energy of solvation -69.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds