Wall clock time and date at job start Tue Mar 31 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47130 * 119.99858 * 3 2 1 6 6 H 1.48493 * 109.46907 * 239.99446 * 3 2 1 7 7 C 1.38798 * 120.00298 * 179.71993 * 2 1 3 8 8 H 1.08001 * 119.99838 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99914 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47105 * 180.02562 * 10 9 7 12 12 O 1.20821 * 120.00486 * 359.97438 * 11 10 9 13 13 O 1.34233 * 120.00050 * 179.97438 * 11 10 9 14 14 C 1.45202 * 117.00158 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46942 * 179.97438 * 14 13 11 16 16 O 1.42902 * 109.47189 * 64.99598 * 15 14 13 17 17 C 1.42901 * 114.00049 * 179.97438 * 16 15 14 18 18 H 1.09006 * 109.47799 * 309.99801 * 17 16 15 19 19 C 1.53088 * 109.48295 * 189.97867 * 17 16 15 20 20 C 1.53176 * 109.16505 * 182.41733 * 19 17 16 21 21 C 1.53172 * 109.04441 * 56.96214 * 20 19 17 22 22 C 1.53093 * 109.16723 * 303.02672 * 21 20 19 23 23 O 1.42897 * 109.48180 * 70.02213 * 17 16 15 24 24 H 0.97005 * 119.99723 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46574 * 300.00119 * 10 9 7 26 26 H 1.08998 * 109.47347 * 59.99464 * 10 9 7 27 27 H 1.09004 * 109.46578 * 299.99639 * 14 13 11 28 28 H 1.08991 * 109.47365 * 59.99762 * 14 13 11 29 29 H 1.08999 * 109.46701 * 184.99474 * 15 14 13 30 30 H 1.09001 * 109.47294 * 304.99672 * 15 14 13 31 31 H 1.09003 * 109.52253 * 302.31790 * 19 17 16 32 32 H 1.09002 * 109.52429 * 62.50168 * 19 17 16 33 33 H 1.09000 * 109.53725 * 297.09726 * 20 19 17 34 34 H 1.09000 * 109.62007 * 176.87673 * 20 19 17 35 35 H 1.09003 * 109.52496 * 183.11769 * 21 20 19 36 36 H 1.09004 * 109.57635 * 62.96116 * 21 20 19 37 37 H 1.08999 * 109.47583 * 297.62674 * 22 21 20 38 38 H 1.09000 * 109.49536 * 177.59330 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6966 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0104 -1.2020 0.0059 8 1 3.0904 -1.2019 0.0063 9 16 1.1294 -2.7279 0.0127 10 6 2.5160 -3.8913 0.0194 11 6 1.9876 -5.3026 0.0253 12 8 0.7958 -5.5015 0.0254 13 8 2.8409 -6.3388 0.0304 14 6 2.2612 -7.6701 0.0353 15 6 3.3803 -8.7134 0.0400 16 8 4.1163 -8.6170 1.2611 17 6 5.1903 -9.5536 1.3679 18 1 4.8252 -10.5536 1.1338 19 6 5.7452 -9.5337 2.7945 20 6 6.9341 -10.4952 2.8851 21 6 7.9848 -10.0900 1.8469 22 6 7.3434 -10.0886 0.4568 23 8 6.2262 -9.1975 0.4501 24 1 -0.4850 -0.8401 -0.0004 25 1 3.1253 -3.7355 -0.8709 26 1 3.1240 -3.7269 0.9090 27 1 1.6443 -7.7944 0.9252 28 1 1.6460 -7.8018 -0.8547 29 1 2.9478 -9.7103 -0.0458 30 1 4.0485 -8.5335 -0.8022 31 1 6.0731 -8.5245 3.0438 32 1 4.9685 -9.8479 3.4919 33 1 6.5967 -11.5121 2.6847 34 1 7.3697 -10.4456 3.8831 35 1 8.8099 -10.8020 1.8666 36 1 8.3592 -9.0923 2.0762 37 1 7.0066 -11.0957 0.2110 38 1 8.0751 -9.7597 -0.2811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791692720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:42 Heat of formation + Delta-G solvation = -197.051134 kcal Electronic energy + Delta-G solvation = -20452.621342 eV Core-core repulsion = 17000.124276 eV Total energy + Delta-G solvation = -3452.497066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.16163 -39.86008 -37.45132 -36.00755 -34.09214 -32.55542 -31.56943 -30.22182 -29.03588 -25.17528 -24.88465 -23.64209 -22.99619 -20.96918 -20.69418 -18.39343 -17.87620 -17.37087 -16.99434 -16.48630 -16.13225 -15.76970 -15.12383 -14.72571 -14.69018 -14.23950 -13.92222 -13.82209 -13.59017 -13.15145 -13.07063 -12.62518 -12.45324 -12.08884 -12.06127 -11.91963 -11.60618 -11.51546 -11.27254 -10.96376 -10.91389 -10.52538 -10.20127 -10.16564 -9.99513 -9.86032 -9.63774 -9.03182 -8.29126 -6.73749 -6.64527 -4.04111 2.57010 2.62899 2.93673 3.33780 3.39078 3.42120 3.58858 3.61522 4.23366 4.33749 4.37193 4.47863 4.51698 4.60334 4.78845 4.85066 4.92945 5.03201 5.12346 5.19128 5.20481 5.25156 5.27659 5.33446 5.42056 5.48870 5.58942 5.64172 5.67245 5.73299 5.85338 6.03195 6.63792 6.69829 6.94897 7.91451 8.13778 8.47584 9.24052 10.79247 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.002713 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.964448 B =10318.603405 C =11043.443471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.036 3.964 3 Si 1.086 2.914 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.607 4.607 8 H 0.069 0.931 9 S -0.116 6.116 10 C -0.106 4.106 11 C 0.479 3.521 12 O -0.492 6.492 13 O -0.350 6.350 14 C 0.068 3.932 15 C 0.064 3.936 16 O -0.356 6.356 17 C 0.256 3.744 18 H 0.052 0.948 19 C -0.142 4.142 20 C -0.119 4.119 21 C -0.161 4.161 22 C 0.072 3.928 23 O -0.403 6.403 24 H 0.277 0.723 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.787 -24.260 2.580 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.174 4.174 3 Si 0.911 3.089 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.755 4.755 8 H 0.087 0.913 9 S 0.111 5.889 10 C -0.254 4.254 11 C 0.320 3.680 12 O -0.378 6.378 13 O -0.267 6.267 14 C -0.006 4.006 15 C -0.013 4.013 16 O -0.276 6.276 17 C 0.160 3.840 18 H 0.069 0.931 19 C -0.180 4.180 20 C -0.157 4.157 21 C -0.199 4.199 22 C -0.005 4.005 23 O -0.324 6.324 24 H 0.090 0.910 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.017 -22.628 2.611 26.235 hybrid contribution 1.680 -1.908 -0.029 2.542 sum 14.697 -24.536 2.582 28.718 Atomic orbital electron populations 1.70815 1.06705 1.30909 1.43269 1.26095 0.96307 1.02174 0.92864 0.83308 0.74738 0.74008 0.76827 1.20269 1.21028 1.21050 1.23689 0.96183 0.91731 1.63850 0.91255 1.84801 1.07722 0.99049 1.97368 1.23043 1.05331 0.90174 1.06857 1.23263 0.85164 0.87252 0.72303 1.90657 1.16961 1.85741 1.44468 1.86585 1.40670 1.14943 1.84545 1.23004 0.94900 0.79256 1.03439 1.22618 0.93453 0.97045 0.88139 1.88120 1.41976 1.59975 1.37487 1.22915 0.81238 0.90203 0.89654 0.93070 1.22029 0.98475 1.02035 0.95483 1.21583 0.95295 0.98781 1.00045 1.22257 0.98736 1.03181 0.95721 1.22511 0.87673 0.93173 0.97146 1.87866 1.29774 1.53119 1.61635 0.91040 0.87655 0.87586 0.90389 0.89517 0.91079 0.90999 0.89766 0.90000 0.91672 0.90614 0.90522 0.90537 0.93195 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.49 13.67 55.49 0.76 -26.73 16 2 C 0.04 1.05 5.49 -17.43 -0.10 0.96 16 3 Si 1.09 25.03 29.92 -169.99 -5.09 19.94 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.61 -17.62 9.50 30.94 0.29 -17.32 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.12 -3.14 19.60 -107.50 -2.11 -5.25 16 10 C -0.11 -2.27 6.27 36.00 0.23 -2.05 16 11 C 0.48 9.67 7.97 36.00 0.29 9.96 16 12 O -0.49 -11.08 15.61 -18.75 -0.29 -11.37 16 13 O -0.35 -6.07 10.19 -42.03 -0.43 -6.50 16 14 C 0.07 0.92 5.85 37.16 0.22 1.14 16 15 C 0.06 0.71 6.20 37.16 0.23 0.94 16 16 O -0.36 -4.61 10.23 -62.04 -0.63 -5.24 16 17 C 0.26 2.59 3.16 37.20 0.12 2.71 16 18 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 19 C -0.14 -1.21 5.79 -26.59 -0.15 -1.37 16 20 C -0.12 -0.72 6.03 -26.55 -0.16 -0.88 16 21 C -0.16 -0.98 6.14 -26.59 -0.16 -1.14 16 22 C 0.07 0.51 6.84 37.21 0.25 0.77 16 23 O -0.40 -4.47 10.25 -59.04 -0.60 -5.08 16 24 H 0.28 8.79 7.13 -40.82 -0.29 8.50 16 25 H 0.11 2.11 8.14 -51.91 -0.42 1.69 16 26 H 0.11 2.16 8.14 -51.92 -0.42 1.74 16 27 H 0.08 1.06 8.13 -51.93 -0.42 0.63 16 28 H 0.09 1.04 8.13 -51.93 -0.42 0.62 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -35.15 336.75 -8.09 -43.23 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.82 Total: -1.78 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 1.05 Total: -6.29 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.76 Total: -26.73 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.96 Total: -28.19 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.09 Total: 19.94 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.11 Total: -5.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.15 -8.09 -43.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791692720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.818 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds