Wall clock time and date at job start Tue Mar 31 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47130 * 119.99858 * 3 2 1 6 6 H 1.48493 * 109.46907 * 239.99446 * 3 2 1 7 7 C 1.38798 * 120.00298 * 179.71993 * 2 1 3 8 8 H 1.08001 * 119.99838 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99914 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47105 * 180.02562 * 10 9 7 12 12 O 1.20821 * 120.00486 * 359.97438 * 11 10 9 13 13 O 1.34233 * 120.00050 * 179.97438 * 11 10 9 14 14 C 1.45202 * 117.00158 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46942 * 179.97438 * 14 13 11 16 16 O 1.42902 * 109.47189 * 64.99598 * 15 14 13 17 17 C 1.42901 * 114.00049 * 179.97438 * 16 15 14 18 18 H 1.09006 * 109.47799 * 309.99801 * 17 16 15 19 19 C 1.53088 * 109.48295 * 189.97867 * 17 16 15 20 20 C 1.53176 * 109.16505 * 182.41733 * 19 17 16 21 21 C 1.53172 * 109.04441 * 56.96214 * 20 19 17 22 22 C 1.53093 * 109.16723 * 303.02672 * 21 20 19 23 23 O 1.42897 * 109.48180 * 70.02213 * 17 16 15 24 24 H 0.97005 * 119.99723 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46574 * 300.00119 * 10 9 7 26 26 H 1.08998 * 109.47347 * 59.99464 * 10 9 7 27 27 H 1.09004 * 109.46578 * 299.99639 * 14 13 11 28 28 H 1.08991 * 109.47365 * 59.99762 * 14 13 11 29 29 H 1.08999 * 109.46701 * 184.99474 * 15 14 13 30 30 H 1.09001 * 109.47294 * 304.99672 * 15 14 13 31 31 H 1.09003 * 109.52253 * 302.31790 * 19 17 16 32 32 H 1.09002 * 109.52429 * 62.50168 * 19 17 16 33 33 H 1.09000 * 109.53725 * 297.09726 * 20 19 17 34 34 H 1.09000 * 109.62007 * 176.87673 * 20 19 17 35 35 H 1.09003 * 109.52496 * 183.11769 * 21 20 19 36 36 H 1.09004 * 109.57635 * 62.96116 * 21 20 19 37 37 H 1.08999 * 109.47583 * 297.62674 * 22 21 20 38 38 H 1.09000 * 109.49536 * 177.59330 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6966 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0104 -1.2020 0.0059 8 1 3.0904 -1.2019 0.0063 9 16 1.1294 -2.7279 0.0127 10 6 2.5160 -3.8913 0.0194 11 6 1.9876 -5.3026 0.0253 12 8 0.7958 -5.5015 0.0254 13 8 2.8409 -6.3388 0.0304 14 6 2.2612 -7.6701 0.0353 15 6 3.3803 -8.7134 0.0400 16 8 4.1163 -8.6170 1.2611 17 6 5.1903 -9.5536 1.3679 18 1 4.8252 -10.5536 1.1338 19 6 5.7452 -9.5337 2.7945 20 6 6.9341 -10.4952 2.8851 21 6 7.9848 -10.0900 1.8469 22 6 7.3434 -10.0886 0.4568 23 8 6.2262 -9.1975 0.4501 24 1 -0.4850 -0.8401 -0.0004 25 1 3.1253 -3.7355 -0.8709 26 1 3.1240 -3.7269 0.9090 27 1 1.6443 -7.7944 0.9252 28 1 1.6460 -7.8018 -0.8547 29 1 2.9478 -9.7103 -0.0458 30 1 4.0485 -8.5335 -0.8022 31 1 6.0731 -8.5245 3.0438 32 1 4.9685 -9.8479 3.4919 33 1 6.5967 -11.5121 2.6847 34 1 7.3697 -10.4456 3.8831 35 1 8.8099 -10.8020 1.8666 36 1 8.3592 -9.0923 2.0762 37 1 7.0066 -11.0957 0.2110 38 1 8.0751 -9.7597 -0.2811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791692720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:41 Heat of formation + Delta-G solvation = -219.374871 kcal Electronic energy + Delta-G solvation = -20453.589372 eV Core-core repulsion = 17000.124276 eV Total energy + Delta-G solvation = -3453.465096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58931 -40.65322 -38.40097 -37.38510 -34.78587 -34.69046 -32.56840 -31.41230 -30.21103 -27.14258 -25.76882 -24.28489 -24.05139 -22.44408 -21.26433 -20.50023 -18.95667 -18.63009 -17.86403 -17.68994 -17.53814 -16.81038 -16.48132 -15.75482 -15.70732 -15.45030 -15.21499 -14.92534 -14.80726 -14.57458 -14.13578 -13.94103 -13.75021 -13.68207 -13.47741 -12.93043 -12.74536 -12.26294 -12.16786 -11.95455 -11.90770 -11.82138 -11.72068 -11.64074 -11.52975 -11.11703 -10.90700 -10.49325 -10.42458 -8.95690 -8.95000 -6.32937 0.86514 1.01061 1.51655 1.61404 1.75507 1.82711 2.20777 2.31178 2.93931 2.99726 3.07853 3.60782 3.75332 3.76299 3.86437 3.95173 3.97950 4.01086 4.03091 4.10442 4.28433 4.29964 4.37120 4.44683 4.60327 4.62954 4.75723 4.82562 4.99685 5.07358 5.10021 5.18456 5.32282 5.62896 5.93907 6.12462 6.27707 6.58009 7.01990 8.48000 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.002713 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.964448 B =10318.603405 C =11043.443471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.016 4.016 3 Si 1.137 2.863 4 H -0.279 1.279 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.617 4.617 8 H 0.077 0.923 9 S -0.179 6.179 10 C -0.090 4.090 11 C 0.488 3.512 12 O -0.520 6.520 13 O -0.348 6.348 14 C 0.060 3.940 15 C 0.069 3.931 16 O -0.388 6.388 17 C 0.249 3.751 18 H 0.076 0.924 19 C -0.144 4.144 20 C -0.115 4.115 21 C -0.160 4.160 22 C 0.063 3.937 23 O -0.433 6.433 24 H 0.261 0.739 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.874 -25.725 2.564 30.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.219 4.219 3 Si 0.955 3.045 4 H -0.204 1.204 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.764 4.764 8 H 0.096 0.904 9 S 0.048 5.952 10 C -0.238 4.238 11 C 0.331 3.669 12 O -0.409 6.409 13 O -0.265 6.265 14 C -0.014 4.014 15 C -0.007 4.007 16 O -0.308 6.308 17 C 0.154 3.846 18 H 0.094 0.906 19 C -0.181 4.181 20 C -0.153 4.153 21 C -0.197 4.197 22 C -0.012 4.012 23 O -0.355 6.355 24 H 0.072 0.928 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.134 -24.147 2.595 28.615 hybrid contribution 1.099 -1.641 -0.024 1.975 sum 16.232 -25.788 2.571 30.579 Atomic orbital electron populations 1.70932 1.07942 1.30016 1.45633 1.27857 0.96307 1.06308 0.91476 0.82707 0.73938 0.69399 0.78492 1.20365 1.18836 1.18750 1.24033 0.96692 0.92422 1.63250 0.90450 1.84934 1.11818 1.00909 1.97571 1.22901 1.02833 0.89740 1.08361 1.22876 0.84776 0.87475 0.71771 1.90649 1.18102 1.86154 1.45986 1.86561 1.40186 1.16030 1.83742 1.23432 0.96305 0.77502 1.04131 1.22691 0.92672 0.97791 0.87570 1.88072 1.43132 1.61389 1.38174 1.23196 0.80668 0.90511 0.90224 0.90650 1.22077 0.99664 1.01469 0.94936 1.21600 0.94212 0.98874 1.00596 1.22253 0.99358 1.02971 0.95125 1.22765 0.86903 0.93576 0.97996 1.87818 1.30918 1.54754 1.62033 0.92792 0.85890 0.86235 0.90610 0.88014 0.87204 0.91367 0.92169 0.89417 0.89911 0.89700 0.88218 0.92144 0.91274 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.61 13.67 21.65 0.30 -57.31 16 2 C -0.02 -0.93 5.49 84.86 0.47 -0.47 16 3 Si 1.14 49.40 29.92 68.60 2.05 51.45 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.62 -35.80 9.50 67.95 0.65 -35.15 16 8 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 9 S -0.18 -9.89 19.60 -56.49 -1.11 -11.00 16 10 C -0.09 -3.81 6.27 71.23 0.45 -3.36 16 11 C 0.49 19.55 7.97 71.23 0.57 20.12 16 12 O -0.52 -23.56 15.61 21.98 0.34 -23.22 16 13 O -0.35 -11.77 10.19 -48.80 -0.50 -12.27 16 14 C 0.06 1.53 5.85 71.98 0.42 1.95 16 15 C 0.07 1.39 6.20 71.98 0.45 1.84 16 16 O -0.39 -9.60 10.23 -123.34 -1.26 -10.86 16 17 C 0.25 4.67 3.16 72.01 0.23 4.90 16 18 H 0.08 1.01 8.09 -2.38 -0.02 0.99 16 19 C -0.14 -2.29 5.79 30.68 0.18 -2.12 16 20 C -0.12 -1.15 6.03 30.71 0.19 -0.96 16 21 C -0.16 -1.63 6.14 30.68 0.19 -1.44 16 22 C 0.06 0.78 6.84 72.01 0.49 1.28 16 23 O -0.43 -9.11 10.25 -126.21 -1.29 -10.40 16 24 H 0.26 17.11 7.13 -92.70 -0.66 16.45 16 25 H 0.12 4.79 8.14 -2.39 -0.02 4.77 16 26 H 0.12 4.76 8.14 -2.40 -0.02 4.74 16 27 H 0.08 1.99 8.13 -2.38 -0.02 1.97 16 28 H 0.10 2.30 8.13 -2.39 -0.02 2.28 16 29 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.43 7.89 -2.39 -0.02 1.41 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -77.02 336.75 3.94 -73.07 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 1.15 Total: 13.94 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 4.26 Total: -13.42 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.30 Total: -57.31 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -2.71 Total: -56.74 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.45 kcal Atomic # 16 Polarization: -9.89 SS G_CDS: -1.11 Total: -11.00 kcal Total: -77.02 3.94 -73.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791692720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.300 kcal (2) G-P(sol) polarization free energy of solvation -77.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds