Wall clock time and date at job start Tue Mar 31 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99976 * 2 1 4 4 H 1.48500 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47157 * 300.00023 * 3 2 1 6 6 H 1.48501 * 109.47198 * 59.99646 * 3 2 1 7 7 C 1.38798 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99333 * 179.97438 * 7 2 1 9 9 S 1.76191 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.81009 * 100.00154 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00202 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99604 * 180.02562 * 11 10 9 14 14 C 1.45201 * 116.99817 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46828 * 179.97438 * 14 13 11 16 16 O 1.42895 * 109.47456 * 65.00328 * 15 14 13 17 17 C 1.42897 * 114.00383 * 180.02562 * 16 15 14 18 18 H 1.09002 * 109.48170 * 54.99805 * 17 16 15 19 19 C 1.53098 * 109.48005 * 175.02232 * 17 16 15 20 20 C 1.53178 * 109.15976 * 177.60179 * 19 17 16 21 21 C 1.53179 * 109.03547 * 303.01729 * 20 19 17 22 22 C 1.53088 * 109.16372 * 56.98571 * 21 20 19 23 23 O 1.42903 * 109.48597 * 294.96962 * 17 16 15 24 24 H 0.96995 * 120.00264 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46613 * 59.99652 * 10 9 7 26 26 H 1.09000 * 109.46699 * 299.99616 * 10 9 7 27 27 H 1.08998 * 109.46863 * 60.00116 * 14 13 11 28 28 H 1.08997 * 109.47003 * 300.00231 * 14 13 11 29 29 H 1.09005 * 109.47228 * 305.00107 * 15 14 13 30 30 H 1.09001 * 109.46804 * 185.00647 * 15 14 13 31 31 H 1.08990 * 109.52021 * 297.50387 * 19 17 16 32 32 H 1.08999 * 109.52366 * 57.63314 * 19 17 16 33 33 H 1.09000 * 109.54595 * 62.88180 * 20 19 17 34 34 H 1.08993 * 109.54622 * 183.15317 * 20 19 17 35 35 H 1.09004 * 109.52091 * 176.88375 * 21 20 19 36 36 H 1.08992 * 109.52309 * 297.01273 * 21 20 19 37 37 H 1.08998 * 109.48639 * 62.37353 * 22 21 20 38 38 H 1.09000 * 109.48485 * 182.39627 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3028 -0.0001 12 8 0.7957 -5.5016 0.0000 13 8 2.8408 -6.3389 0.0003 14 6 2.2611 -7.6702 0.0002 15 6 3.3801 -8.7136 0.0001 16 8 4.1169 -8.6222 1.2211 17 6 5.1916 -9.5584 1.3230 18 1 5.8498 -9.4515 0.4607 19 6 5.9829 -9.2896 2.6058 20 6 7.0957 -10.3339 2.7381 21 6 6.4724 -11.7330 2.7219 22 6 5.6623 -11.9074 1.4347 23 8 4.6652 -10.8864 1.3590 24 1 -0.4850 0.8400 -0.0004 25 1 3.1246 -3.7313 0.8905 26 1 3.1245 -3.7314 -0.8895 27 1 1.6453 -7.7983 -0.8900 28 1 1.6447 -7.7981 0.8900 29 1 4.0479 -8.5302 -0.8418 30 1 2.9477 -9.7101 -0.0896 31 1 6.4220 -8.2931 2.5608 32 1 5.3162 -9.3555 3.4656 33 1 7.7902 -10.2345 1.9039 34 1 7.6278 -10.1827 3.6772 35 1 7.2617 -12.4839 2.7600 36 1 5.8167 -11.8497 3.5847 37 1 6.3265 -11.8313 0.5739 38 1 5.1815 -12.8857 1.4374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791692732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:45 Heat of formation + Delta-G solvation = -192.799622 kcal Electronic energy + Delta-G solvation = -20336.280537 eV Core-core repulsion = 16883.967831 eV Total energy + Delta-G solvation = -3452.312706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 5.70 seconds Orbital eigenvalues (eV) -40.11660 -39.81878 -37.40033 -35.92751 -34.09563 -32.46314 -31.52568 -30.15626 -28.94376 -25.54579 -25.14724 -23.63293 -22.92165 -20.94771 -20.65801 -17.94868 -17.84977 -17.28337 -16.87633 -16.38483 -16.03272 -15.59298 -15.09176 -14.82905 -14.72519 -14.49176 -14.00176 -13.87556 -13.53123 -13.14776 -13.02941 -12.69896 -12.51563 -11.99477 -11.72918 -11.65887 -11.58752 -11.31801 -11.08083 -11.05063 -10.97194 -10.78668 -10.42938 -10.14462 -9.91904 -9.86278 -9.85171 -9.10284 -8.32144 -6.57370 -6.25252 -3.97402 2.69116 2.73010 2.96625 3.21131 3.25875 3.31190 3.56224 3.60692 4.16789 4.35156 4.39003 4.48875 4.56020 4.65442 4.84660 4.93940 4.95642 5.08337 5.10554 5.13378 5.27253 5.31339 5.34077 5.39686 5.48712 5.50136 5.58818 5.67682 5.75574 5.83248 5.86575 6.13047 6.70888 6.74691 6.93089 7.57911 8.23283 8.32907 9.20315 10.82354 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.032149 B = 0.002522 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.746081 B =11097.952774 C =11783.363111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.076 0.924 9 S -0.060 6.060 10 C -0.128 4.128 11 C 0.479 3.521 12 O -0.490 6.490 13 O -0.355 6.355 14 C 0.068 3.932 15 C 0.066 3.934 16 O -0.356 6.356 17 C 0.255 3.745 18 H 0.054 0.946 19 C -0.142 4.142 20 C -0.120 4.120 21 C -0.161 4.161 22 C 0.072 3.928 23 O -0.408 6.408 24 H 0.269 0.731 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.510 -23.433 2.294 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.682 4.682 8 H 0.095 0.905 9 S 0.166 5.834 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.376 6.376 13 O -0.273 6.273 14 C -0.007 4.007 15 C -0.011 4.011 16 O -0.275 6.275 17 C 0.160 3.840 18 H 0.072 0.928 19 C -0.180 4.180 20 C -0.158 4.158 21 C -0.198 4.198 22 C -0.004 4.004 23 O -0.330 6.330 24 H 0.078 0.922 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.621 -23.513 2.431 26.797 hybrid contribution 2.078 1.031 -0.174 2.326 sum 14.700 -22.482 2.257 26.956 Atomic orbital electron populations 1.70025 1.05978 1.27488 1.46773 1.25013 0.95074 0.99128 0.94403 0.86064 0.79603 0.81603 0.77909 1.19515 1.20534 1.20524 1.22885 0.95058 0.91166 1.59123 0.90548 1.85411 1.04503 0.96590 1.96869 1.23285 1.06861 0.90962 1.06449 1.23296 0.85179 0.87165 0.72310 1.90663 1.16960 1.85703 1.44283 1.86555 1.40987 1.15046 1.84721 1.23014 0.94990 0.79108 1.03569 1.22594 0.93695 0.97816 0.86948 1.88134 1.46877 1.53109 1.39428 1.22962 0.86247 0.77817 0.96996 0.92825 1.22020 0.97533 1.00427 0.97992 1.21592 0.97324 0.93930 1.02931 1.22252 1.00363 0.97737 0.99485 1.22498 0.90525 0.90935 0.96464 1.87802 1.34823 1.15685 1.94669 0.92152 0.87892 0.87986 0.89521 0.90274 0.92051 0.90111 0.89732 0.89976 0.91549 0.90609 0.90534 0.90673 0.93070 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 8 H 0.08 2.06 7.80 -52.48 -0.41 1.65 16 9 S -0.06 -1.63 20.58 -107.50 -2.21 -3.84 16 10 C -0.13 -2.69 6.27 36.01 0.23 -2.46 16 11 C 0.48 9.59 7.98 36.01 0.29 9.87 16 12 O -0.49 -11.10 15.61 -18.75 -0.29 -11.39 16 13 O -0.36 -6.02 10.19 -42.03 -0.43 -6.45 16 14 C 0.07 0.92 5.84 37.16 0.22 1.14 16 15 C 0.07 0.74 6.19 37.16 0.23 0.97 16 16 O -0.36 -4.66 10.24 -62.04 -0.64 -5.29 16 17 C 0.26 2.62 3.20 37.21 0.12 2.74 16 18 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 19 C -0.14 -1.24 5.79 -26.59 -0.15 -1.39 16 20 C -0.12 -0.74 6.03 -26.55 -0.16 -0.90 16 21 C -0.16 -0.91 6.14 -26.59 -0.16 -1.08 16 22 C 0.07 0.48 6.84 37.20 0.25 0.73 16 23 O -0.41 -4.17 10.03 -59.04 -0.59 -4.76 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.10 2.03 8.14 -51.92 -0.42 1.61 16 26 H 0.10 1.97 8.14 -51.92 -0.42 1.55 16 27 H 0.09 1.07 8.13 -51.93 -0.42 0.64 16 28 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.79 7.75 -51.93 -0.40 0.38 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 337.83 15.07 5.09 5.09 Total: -1.00 -33.92 337.83 -8.17 -42.09 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.86 Total: -3.23 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 1.05 Total: -3.27 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.73 Total: -25.27 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -1.95 Total: -27.89 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.92 -8.17 -42.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791692732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.713 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.70 seconds