Wall clock time and date at job start Tue Mar 31 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99976 * 2 1 4 4 H 1.48500 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47157 * 300.00023 * 3 2 1 6 6 H 1.48501 * 109.47198 * 59.99646 * 3 2 1 7 7 C 1.38798 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99333 * 179.97438 * 7 2 1 9 9 S 1.76191 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.81009 * 100.00154 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00202 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99604 * 180.02562 * 11 10 9 14 14 C 1.45201 * 116.99817 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46828 * 179.97438 * 14 13 11 16 16 O 1.42895 * 109.47456 * 65.00328 * 15 14 13 17 17 C 1.42897 * 114.00383 * 180.02562 * 16 15 14 18 18 H 1.09002 * 109.48170 * 54.99805 * 17 16 15 19 19 C 1.53098 * 109.48005 * 175.02232 * 17 16 15 20 20 C 1.53178 * 109.15976 * 177.60179 * 19 17 16 21 21 C 1.53179 * 109.03547 * 303.01729 * 20 19 17 22 22 C 1.53088 * 109.16372 * 56.98571 * 21 20 19 23 23 O 1.42903 * 109.48597 * 294.96962 * 17 16 15 24 24 H 0.96995 * 120.00264 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46613 * 59.99652 * 10 9 7 26 26 H 1.09000 * 109.46699 * 299.99616 * 10 9 7 27 27 H 1.08998 * 109.46863 * 60.00116 * 14 13 11 28 28 H 1.08997 * 109.47003 * 300.00231 * 14 13 11 29 29 H 1.09005 * 109.47228 * 305.00107 * 15 14 13 30 30 H 1.09001 * 109.46804 * 185.00647 * 15 14 13 31 31 H 1.08990 * 109.52021 * 297.50387 * 19 17 16 32 32 H 1.08999 * 109.52366 * 57.63314 * 19 17 16 33 33 H 1.09000 * 109.54595 * 62.88180 * 20 19 17 34 34 H 1.08993 * 109.54622 * 183.15317 * 20 19 17 35 35 H 1.09004 * 109.52091 * 176.88375 * 21 20 19 36 36 H 1.08992 * 109.52309 * 297.01273 * 21 20 19 37 37 H 1.08998 * 109.48639 * 62.37353 * 22 21 20 38 38 H 1.09000 * 109.48485 * 182.39627 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3028 -0.0001 12 8 0.7957 -5.5016 0.0000 13 8 2.8408 -6.3389 0.0003 14 6 2.2611 -7.6702 0.0002 15 6 3.3801 -8.7136 0.0001 16 8 4.1169 -8.6222 1.2211 17 6 5.1916 -9.5584 1.3230 18 1 5.8498 -9.4515 0.4607 19 6 5.9829 -9.2896 2.6058 20 6 7.0957 -10.3339 2.7381 21 6 6.4724 -11.7330 2.7219 22 6 5.6623 -11.9074 1.4347 23 8 4.6652 -10.8864 1.3590 24 1 -0.4850 0.8400 -0.0004 25 1 3.1246 -3.7313 0.8905 26 1 3.1245 -3.7314 -0.8895 27 1 1.6453 -7.7983 -0.8900 28 1 1.6447 -7.7981 0.8900 29 1 4.0479 -8.5302 -0.8418 30 1 2.9477 -9.7101 -0.0896 31 1 6.4220 -8.2931 2.5608 32 1 5.3162 -9.3555 3.4656 33 1 7.7902 -10.2345 1.9039 34 1 7.6278 -10.1827 3.6772 35 1 7.2617 -12.4839 2.7600 36 1 5.8167 -11.8497 3.5847 37 1 6.3265 -11.8313 0.5739 38 1 5.1815 -12.8857 1.4374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791692732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:44 Heat of formation + Delta-G solvation = -213.890601 kcal Electronic energy + Delta-G solvation = -20337.195111 eV Core-core repulsion = 16883.967831 eV Total energy + Delta-G solvation = -3453.227280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49269 -40.64913 -38.35299 -37.30884 -34.68387 -34.60952 -32.50646 -31.31795 -30.14802 -27.70956 -25.76378 -24.26614 -23.99156 -22.39251 -21.25280 -19.91913 -18.82142 -18.65177 -17.68400 -17.57617 -17.37720 -16.89669 -16.63134 -16.05988 -15.78633 -15.47734 -15.17784 -14.81673 -14.70075 -14.52978 -13.94606 -13.80361 -13.67998 -13.42645 -13.17857 -12.91573 -12.76444 -12.60576 -12.34161 -12.19084 -11.89485 -11.79546 -11.75888 -11.59942 -11.47740 -11.17284 -10.89399 -10.48957 -10.37569 -8.73763 -8.37369 -6.17171 1.02170 1.12711 1.41390 1.42572 1.56810 1.89517 2.22885 2.23947 2.91246 2.97635 3.26539 3.68708 3.78448 3.84165 3.89500 3.96984 3.99646 4.04878 4.10107 4.17912 4.34780 4.43538 4.44814 4.50883 4.59579 4.64362 4.78004 4.83972 5.01162 5.09110 5.10539 5.26507 5.33237 5.41634 5.97387 6.18689 6.23776 6.68490 7.04323 8.72232 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.032149 B = 0.002522 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.746081 B =11097.952774 C =11783.363111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 1.002 2.998 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.086 0.914 9 S -0.139 6.139 10 C -0.108 4.108 11 C 0.488 3.512 12 O -0.522 6.522 13 O -0.348 6.348 14 C 0.061 3.939 15 C 0.071 3.929 16 O -0.387 6.387 17 C 0.251 3.749 18 H 0.069 0.931 19 C -0.143 4.143 20 C -0.117 4.117 21 C -0.158 4.158 22 C 0.063 3.937 23 O -0.430 6.430 24 H 0.273 0.727 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.077 -24.125 1.977 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.823 3.177 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.104 0.896 9 S 0.088 5.912 10 C -0.256 4.256 11 C 0.330 3.670 12 O -0.411 6.411 13 O -0.265 6.265 14 C -0.013 4.013 15 C -0.005 4.005 16 O -0.307 6.307 17 C 0.156 3.844 18 H 0.086 0.914 19 C -0.181 4.181 20 C -0.154 4.154 21 C -0.196 4.196 22 C -0.012 4.012 23 O -0.352 6.352 24 H 0.082 0.918 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.215 -24.243 2.114 28.700 hybrid contribution 1.319 1.056 -0.062 1.691 sum 16.534 -23.186 2.052 28.552 Atomic orbital electron populations 1.70174 1.07941 1.28737 1.47802 1.26145 0.96017 1.03340 0.93564 0.84861 0.78586 0.76102 0.78121 1.18036 1.19808 1.19907 1.23221 0.95504 0.91506 1.59180 0.89600 1.85529 1.09363 0.99163 1.97162 1.23081 1.04189 0.90091 1.08228 1.23002 0.84774 0.87525 0.71654 1.90657 1.18304 1.86166 1.45947 1.86528 1.40244 1.15814 1.83908 1.23361 0.96298 0.77713 1.03880 1.22619 0.93286 0.97460 0.87085 1.88088 1.47895 1.54490 1.40193 1.23149 0.85555 0.77646 0.98074 0.91413 1.22062 0.97927 1.01334 0.96791 1.21609 0.96568 0.93300 1.03951 1.22245 1.00671 0.98052 0.98599 1.22773 0.90488 0.90479 0.97475 1.87766 1.36477 1.16075 1.94887 0.91844 0.86268 0.85863 0.88077 0.91259 0.90468 0.88378 0.89975 0.91666 0.90306 0.89702 0.88274 0.91744 0.91613 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.34 13.22 21.65 0.29 -55.05 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.55 -31.01 9.50 67.95 0.65 -30.36 16 8 H 0.09 4.54 7.80 -2.91 -0.02 4.52 16 9 S -0.14 -7.68 20.58 -56.49 -1.16 -8.85 16 10 C -0.11 -4.45 6.27 71.24 0.45 -4.00 16 11 C 0.49 19.31 7.98 71.24 0.57 19.88 16 12 O -0.52 -23.91 15.61 21.97 0.34 -23.56 16 13 O -0.35 -11.40 10.19 -48.78 -0.50 -11.89 16 14 C 0.06 1.61 5.84 71.98 0.42 2.04 16 15 C 0.07 1.50 6.19 71.98 0.45 1.95 16 16 O -0.39 -9.77 10.24 -123.34 -1.26 -11.03 16 17 C 0.25 4.82 3.20 72.01 0.23 5.05 16 18 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 19 C -0.14 -2.38 5.79 30.69 0.18 -2.20 16 20 C -0.12 -1.21 6.03 30.71 0.19 -1.03 16 21 C -0.16 -1.47 6.14 30.68 0.19 -1.28 16 22 C 0.06 0.70 6.84 72.01 0.49 1.20 16 23 O -0.43 -8.20 10.03 -126.21 -1.27 -9.47 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H 0.12 4.55 8.14 -2.40 -0.02 4.53 16 26 H 0.12 4.58 8.14 -2.40 -0.02 4.56 16 27 H 0.10 2.38 8.13 -2.39 -0.02 2.36 16 28 H 0.07 1.97 8.13 -2.39 -0.02 1.96 16 29 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.10 1.74 7.75 -2.39 -0.02 1.72 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -73.82 337.83 3.77 -70.05 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.04 Total: 11.94 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 4.27 Total: -7.49 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.29 Total: -55.05 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -2.68 Total: -55.96 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.16 Total: -8.85 kcal Total: -73.82 3.77 -70.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791692732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.840 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds