Wall clock time and date at job start Tue Mar 31 2020 08:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 108.57870 * 2 1 4 4 O 1.42105 * 108.57659 * 228.97910 * 2 1 3 5 5 C 1.81397 * 101.92070 * 114.49261 * 2 1 3 6 6 C 1.50695 * 112.90718 * 65.50689 * 5 2 1 7 7 O 1.20832 * 120.00056 * 214.56521 * 6 5 2 8 8 O 1.34227 * 120.00255 * 34.56809 * 6 5 2 9 9 C 1.45204 * 117.00080 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46810 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.46739 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46678 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99320 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00570 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99612 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46851 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46914 * 120.00292 * 16 14 12 19 19 H 1.48496 * 109.47200 * 240.00525 * 16 14 12 20 20 C 1.53783 * 113.61112 * 294.25778 * 5 2 1 21 21 C 1.53783 * 87.07935 * 220.01857 * 20 5 2 22 22 C 1.53782 * 87.08294 * 25.43217 * 21 20 5 23 23 H 1.08998 * 109.46974 * 309.74136 * 1 2 3 24 24 H 1.09004 * 109.46847 * 69.73816 * 1 2 3 25 25 H 1.08997 * 109.47253 * 189.73695 * 1 2 3 26 26 H 1.08994 * 109.47492 * 300.00534 * 9 8 6 27 27 H 1.09010 * 109.46743 * 60.00320 * 9 8 6 28 28 H 1.09003 * 109.47039 * 300.00130 * 10 9 8 29 29 H 1.08993 * 109.47326 * 60.00693 * 10 9 8 30 30 H 1.09003 * 109.47065 * 299.99629 * 11 10 9 31 31 H 1.08997 * 109.47503 * 59.99963 * 11 10 9 32 32 H 0.96996 * 120.00539 * 179.97438 * 15 14 12 33 33 H 1.09002 * 113.61238 * 105.47185 * 20 5 2 34 34 H 1.08998 * 113.61688 * 334.56715 * 20 5 2 35 35 H 1.08998 * 113.61388 * 139.97970 * 21 20 5 36 36 H 1.08996 * 113.61558 * 270.88366 * 21 20 5 37 37 H 1.09002 * 113.61237 * 89.11210 * 22 21 20 38 38 H 1.08997 * 113.61772 * 219.93730 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1887 -0.7358 1.6151 6 6 1.7468 -2.1725 1.7219 7 8 1.3410 -2.6032 2.7755 8 8 1.8040 -2.9740 0.6467 9 6 1.3627 -4.3461 0.8230 10 6 1.5006 -5.1002 -0.5010 11 6 1.0350 -6.5458 -0.3154 12 6 1.1703 -7.2885 -1.6198 13 1 1.5507 -6.7804 -2.4935 14 6 0.8094 -8.6170 -1.6972 15 7 0.3466 -9.2358 -0.6331 16 14 0.9764 -9.5374 -3.3141 17 1 1.5167 -8.6221 -4.3512 18 1 1.9017 -10.6853 -3.1370 19 1 -0.3559 -10.0366 -3.7395 20 6 1.7495 0.1338 2.8050 21 6 3.0649 -0.2756 3.4885 22 6 3.6361 -0.5004 2.0785 23 1 -0.3633 0.6570 0.7902 24 1 -0.3633 0.3559 -0.9641 25 1 -0.3633 -1.0128 0.1738 26 1 1.9765 -4.8305 1.5823 27 1 0.3195 -4.3544 1.1394 28 1 0.8870 -4.6159 -1.2607 29 1 2.5437 -5.0919 -0.8169 30 1 1.6483 -7.0304 0.4443 31 1 -0.0082 -6.5539 0.0003 32 1 0.0923 -10.1703 -0.6877 33 1 0.8595 -0.2381 3.3126 34 1 1.6915 1.1968 2.5710 35 1 3.5471 0.5381 4.0303 36 1 2.9848 -1.1889 4.0779 37 1 4.0937 0.3893 1.6459 38 1 4.2702 -1.3835 1.9999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796192070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:03 Heat of formation + Delta-G solvation = -138.240325 kcal Electronic energy + Delta-G solvation = -21682.986984 eV Core-core repulsion = 18233.040146 eV Total energy + Delta-G solvation = -3449.946838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09698 -38.67042 -37.15234 -36.40112 -36.22166 -34.03557 -31.75894 -29.99493 -28.23537 -26.70260 -26.28856 -23.60626 -22.15314 -20.45579 -20.03042 -19.16767 -18.24715 -17.01511 -16.80940 -16.41011 -16.21489 -16.12401 -15.72720 -14.87981 -14.47075 -14.22286 -13.77505 -13.48684 -13.41581 -13.07473 -12.97595 -12.75707 -12.33991 -12.22785 -12.19618 -12.16360 -11.92264 -11.50285 -11.30091 -11.07190 -11.00199 -10.78676 -10.67404 -10.52968 -10.50564 -10.26689 -9.75639 -9.52998 -9.15900 -8.39741 -6.04419 -4.07081 -0.37574 1.85915 2.30256 2.44174 3.21581 3.30371 3.37888 3.42405 3.43653 3.79366 3.98149 4.22761 4.39302 4.48041 4.54122 4.66702 4.92413 5.02653 5.19783 5.31911 5.38386 5.39268 5.43667 5.47826 5.50075 5.53572 5.85191 5.93945 6.32401 6.52800 6.74951 6.97452 7.58129 7.61015 7.68972 7.94239 8.35376 8.99592 9.57519 11.07092 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.003573 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.578089 B = 7834.645573 C = 8404.970228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.434 3.566 3 O -0.930 6.930 4 O -0.900 6.900 5 C -0.589 4.589 6 C 0.492 3.508 7 O -0.485 6.485 8 O -0.341 6.341 9 C 0.068 3.932 10 C -0.111 4.111 11 C 0.024 3.976 12 C -0.520 4.520 13 H 0.059 0.941 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.094 4.094 23 H 0.130 0.870 24 H 0.136 0.864 25 H 0.131 0.869 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 22.155 7.186 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.612 3.388 3 O -0.928 6.928 4 O -0.897 6.897 5 C -0.676 4.676 6 C 0.332 3.668 7 O -0.372 6.372 8 O -0.257 6.257 9 C -0.005 4.005 10 C -0.148 4.148 11 C -0.013 4.013 12 C -0.558 4.558 13 H 0.078 0.922 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.137 4.137 21 C -0.164 4.164 22 C -0.132 4.132 23 H 0.148 0.852 24 H 0.154 0.846 25 H 0.149 0.851 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.539 22.076 6.903 23.269 hybrid contribution -0.642 -1.114 -0.149 1.294 sum 1.898 20.963 6.755 22.105 Atomic orbital electron populations 1.30231 1.25919 1.12074 1.12071 1.07810 0.79032 0.75694 0.76267 1.93600 1.79733 1.33761 1.85665 1.93683 1.78609 1.66145 1.51313 1.31224 1.10624 1.01287 1.24492 1.21460 0.75745 0.86333 0.83286 1.90652 1.41871 1.75180 1.29500 1.86649 1.76883 1.25408 1.36763 1.23683 0.99737 0.75159 1.01901 1.21808 1.02565 0.97533 0.92929 1.19071 0.96713 0.87732 0.97806 1.21223 1.43040 0.95475 0.96103 0.92235 1.25024 0.95153 0.97689 0.96585 1.69968 1.43857 1.11089 1.28566 0.86491 0.77725 0.79773 0.83774 1.19587 1.20983 1.20988 1.22751 1.01200 0.97894 0.91882 1.22822 0.94880 1.03048 0.95613 1.22682 0.88797 1.04325 0.97422 0.85157 0.84568 0.85073 0.91115 0.91151 0.91757 0.91726 0.96232 0.96246 0.92965 0.88356 0.87144 0.89873 0.88590 0.86974 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.86 10.40 101.05 1.05 -3.81 16 2 S 2.43 25.43 4.80 -107.50 -0.52 24.92 16 3 O -0.93 -10.75 17.46 -57.83 -1.01 -11.76 16 4 O -0.90 -13.36 16.82 -64.77 -1.09 -14.45 16 5 C -0.59 -6.02 1.10 -90.96 -0.10 -6.12 16 6 C 0.49 6.82 6.70 36.00 0.24 7.06 16 7 O -0.49 -7.58 15.08 -18.76 -0.28 -7.86 16 8 O -0.34 -5.55 8.73 -45.09 -0.39 -5.94 16 9 C 0.07 1.21 5.47 37.16 0.20 1.41 16 10 C -0.11 -2.31 5.53 -26.73 -0.15 -2.46 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.10 -0.74 6.89 -25.92 -0.18 -0.92 16 21 C -0.13 -0.97 7.69 -25.92 -0.20 -1.17 16 22 C -0.09 -0.82 7.22 -25.92 -0.19 -1.01 16 23 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.14 0.84 8.14 -51.92 -0.42 0.41 16 25 H 0.13 1.02 8.00 -51.93 -0.42 0.61 16 26 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 27 H 0.07 1.20 8.13 -51.92 -0.42 0.78 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.10 0.73 7.66 -51.93 -0.40 0.33 16 34 H 0.11 0.56 7.84 -51.93 -0.41 0.16 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.88 7.58 -51.93 -0.39 0.49 16 37 H 0.11 0.78 7.84 -51.93 -0.41 0.38 16 38 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -35.17 333.90 -8.20 -43.37 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.79 Total: -3.91 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 0.13 Total: -19.99 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -2.78 Total: -40.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 25.43 SS G_CDS: -0.52 Total: 24.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.17 -8.20 -43.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796192070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.874 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds