Wall clock time and date at job start Tue Mar 31 2020 08:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 108.57870 * 2 1 4 4 O 1.42105 * 108.57659 * 228.97910 * 2 1 3 5 5 C 1.81397 * 101.92070 * 114.49261 * 2 1 3 6 6 C 1.50695 * 112.90718 * 65.50689 * 5 2 1 7 7 O 1.20832 * 120.00056 * 214.56521 * 6 5 2 8 8 O 1.34227 * 120.00255 * 34.56809 * 6 5 2 9 9 C 1.45204 * 117.00080 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46810 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.46739 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46678 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99320 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00570 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99612 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46851 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46914 * 120.00292 * 16 14 12 19 19 H 1.48496 * 109.47200 * 240.00525 * 16 14 12 20 20 C 1.53783 * 113.61112 * 294.25778 * 5 2 1 21 21 C 1.53783 * 87.07935 * 220.01857 * 20 5 2 22 22 C 1.53782 * 87.08294 * 25.43217 * 21 20 5 23 23 H 1.08998 * 109.46974 * 309.74136 * 1 2 3 24 24 H 1.09004 * 109.46847 * 69.73816 * 1 2 3 25 25 H 1.08997 * 109.47253 * 189.73695 * 1 2 3 26 26 H 1.08994 * 109.47492 * 300.00534 * 9 8 6 27 27 H 1.09010 * 109.46743 * 60.00320 * 9 8 6 28 28 H 1.09003 * 109.47039 * 300.00130 * 10 9 8 29 29 H 1.08993 * 109.47326 * 60.00693 * 10 9 8 30 30 H 1.09003 * 109.47065 * 299.99629 * 11 10 9 31 31 H 1.08997 * 109.47503 * 59.99963 * 11 10 9 32 32 H 0.96996 * 120.00539 * 179.97438 * 15 14 12 33 33 H 1.09002 * 113.61238 * 105.47185 * 20 5 2 34 34 H 1.08998 * 113.61688 * 334.56715 * 20 5 2 35 35 H 1.08998 * 113.61388 * 139.97970 * 21 20 5 36 36 H 1.08996 * 113.61558 * 270.88366 * 21 20 5 37 37 H 1.09002 * 113.61237 * 89.11210 * 22 21 20 38 38 H 1.08997 * 113.61772 * 219.93730 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1887 -0.7358 1.6151 6 6 1.7468 -2.1725 1.7219 7 8 1.3410 -2.6032 2.7755 8 8 1.8040 -2.9740 0.6467 9 6 1.3627 -4.3461 0.8230 10 6 1.5006 -5.1002 -0.5010 11 6 1.0350 -6.5458 -0.3154 12 6 1.1703 -7.2885 -1.6198 13 1 1.5507 -6.7804 -2.4935 14 6 0.8094 -8.6170 -1.6972 15 7 0.3466 -9.2358 -0.6331 16 14 0.9764 -9.5374 -3.3141 17 1 1.5167 -8.6221 -4.3512 18 1 1.9017 -10.6853 -3.1370 19 1 -0.3559 -10.0366 -3.7395 20 6 1.7495 0.1338 2.8050 21 6 3.0649 -0.2756 3.4885 22 6 3.6361 -0.5004 2.0785 23 1 -0.3633 0.6570 0.7902 24 1 -0.3633 0.3559 -0.9641 25 1 -0.3633 -1.0128 0.1738 26 1 1.9765 -4.8305 1.5823 27 1 0.3195 -4.3544 1.1394 28 1 0.8870 -4.6159 -1.2607 29 1 2.5437 -5.0919 -0.8169 30 1 1.6483 -7.0304 0.4443 31 1 -0.0082 -6.5539 0.0003 32 1 0.0923 -10.1703 -0.6877 33 1 0.8595 -0.2381 3.3126 34 1 1.6915 1.1968 2.5710 35 1 3.5471 0.5381 4.0303 36 1 2.9848 -1.1889 4.0779 37 1 4.0937 0.3893 1.6459 38 1 4.2702 -1.3835 1.9999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796192070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:02 Heat of formation + Delta-G solvation = -161.823094 kcal Electronic energy + Delta-G solvation = -21684.009610 eV Core-core repulsion = 18233.040146 eV Total energy + Delta-G solvation = -3450.969463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.15956 -39.60545 -38.06406 -37.59165 -37.15145 -35.97463 -33.72271 -30.64380 -29.54887 -28.12989 -26.91976 -25.30823 -23.32682 -22.19730 -20.85316 -20.21139 -19.16625 -18.61515 -17.97633 -17.78314 -17.21721 -17.11722 -16.61829 -16.49096 -15.82540 -15.59107 -14.85730 -14.28227 -14.20146 -14.04744 -14.01276 -13.87410 -13.63726 -13.57264 -13.46290 -13.22541 -13.11061 -12.86471 -12.52641 -12.46236 -12.27344 -12.14011 -12.05776 -11.74805 -11.72179 -11.47138 -11.42167 -11.22978 -11.08794 -10.58212 -8.22737 -6.33684 -1.16313 0.79383 1.22420 1.40929 1.41591 1.55339 1.61435 2.40672 2.44829 2.63878 3.04116 3.11347 3.22219 3.45933 3.61165 3.96283 3.97878 3.99818 4.08827 4.19151 4.38373 4.50014 4.57456 4.71276 4.77449 4.80114 4.85194 4.87955 4.99140 5.04762 5.21558 5.33482 5.49382 5.62891 5.79721 6.18943 6.41177 6.81797 7.35846 8.89532 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.003573 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.578089 B = 7834.645573 C = 8404.970228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.436 3.564 3 O -0.943 6.943 4 O -0.954 6.954 5 C -0.591 4.591 6 C 0.493 3.507 7 O -0.504 6.504 8 O -0.350 6.350 9 C 0.076 3.924 10 C -0.099 4.099 11 C 0.027 3.973 12 C -0.544 4.544 13 H 0.062 0.938 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.276 1.276 20 C -0.092 4.092 21 C -0.125 4.125 22 C -0.101 4.101 23 H 0.165 0.835 24 H 0.152 0.848 25 H 0.129 0.871 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.062 0.938 30 H -0.002 1.002 31 H 0.002 0.998 32 H 0.265 0.735 33 H 0.101 0.899 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.803 23.991 7.049 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.619 3.381 3 O -0.940 6.940 4 O -0.951 6.951 5 C -0.678 4.678 6 C 0.334 3.666 7 O -0.391 6.391 8 O -0.266 6.266 9 C 0.003 3.997 10 C -0.136 4.136 11 C -0.010 4.010 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.791 3.209 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.130 4.130 21 C -0.163 4.163 22 C -0.139 4.139 23 H 0.183 0.817 24 H 0.171 0.829 25 H 0.147 0.853 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.017 0.983 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.161 0.839 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.151 0.849 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.227 23.934 6.766 24.971 hybrid contribution -0.558 -1.626 -0.027 1.719 sum 1.669 22.308 6.739 23.364 Atomic orbital electron populations 1.30157 1.21833 1.13060 1.14544 1.07505 0.80467 0.74674 0.75499 1.93578 1.80980 1.33694 1.85733 1.93623 1.80656 1.67296 1.53569 1.31316 1.12207 0.98716 1.25574 1.22071 0.74904 0.87357 0.82261 1.90645 1.42710 1.75863 1.29900 1.86634 1.77208 1.24587 1.38173 1.23303 1.00217 0.76345 0.99864 1.21500 1.02120 0.95272 0.94728 1.18937 0.95319 0.90422 0.96316 1.21649 1.43158 0.96286 0.97099 0.92011 1.25955 0.94587 0.98684 1.00390 1.70086 1.44651 1.11612 1.30858 0.85372 0.77994 0.78331 0.79195 1.18670 1.20338 1.20191 1.22968 1.01090 0.98991 0.89910 1.22813 0.95258 1.03193 0.95003 1.22889 0.87856 1.04859 0.98330 0.81659 0.82940 0.85268 0.91335 0.90473 0.91418 0.91972 0.98322 0.97963 0.92639 0.88072 0.83925 0.87135 0.90548 0.84926 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -7.79 10.40 113.37 1.18 -6.62 16 2 S 2.44 47.49 4.80 -56.49 -0.27 47.22 16 3 O -0.94 -19.86 17.46 -127.37 -2.22 -22.08 16 4 O -0.95 -28.42 16.82 -120.74 -2.03 -30.45 16 5 C -0.59 -11.19 1.10 -11.01 -0.01 -11.20 16 6 C 0.49 13.43 6.70 71.23 0.48 13.90 16 7 O -0.50 -15.52 15.08 21.94 0.33 -15.19 16 8 O -0.35 -11.42 8.73 -45.81 -0.40 -11.82 16 9 C 0.08 2.75 5.47 71.98 0.39 3.14 16 10 C -0.10 -4.19 5.53 30.60 0.17 -4.02 16 11 C 0.03 1.43 4.97 29.85 0.15 1.58 16 12 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 13 H 0.06 3.42 7.74 -2.92 -0.02 3.39 16 14 C 0.00 0.10 5.46 84.66 0.46 0.57 16 15 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 16 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 C -0.09 -1.11 6.89 31.12 0.21 -0.90 16 21 C -0.12 -1.66 7.69 31.12 0.24 -1.42 16 22 C -0.10 -1.62 7.22 31.12 0.22 -1.40 16 23 H 0.17 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.13 1.74 8.00 -2.39 -0.02 1.72 16 26 H 0.07 2.49 8.13 -2.39 -0.02 2.47 16 27 H 0.08 2.67 8.13 -2.38 -0.02 2.65 16 28 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 29 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.10 1.22 7.66 -2.39 -0.02 1.20 16 34 H 0.14 0.84 7.84 -2.39 -0.02 0.82 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.34 7.58 -2.39 -0.02 1.32 16 37 H 0.13 1.58 7.84 -2.39 -0.02 1.56 16 38 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 Total: -1.00 -76.68 333.90 2.49 -74.19 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.04 Total: 5.16 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 3.73 Total: -37.24 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.13 kcal Atomic # 8 Polarization: -75.23 SS G_CDS: -4.32 Total: -79.55 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 47.49 SS G_CDS: -0.27 Total: 47.22 kcal Total: -76.68 2.49 -74.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796192070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.632 kcal (2) G-P(sol) polarization free energy of solvation -76.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds