Wall clock time and date at job start Tue Mar 31 2020 08:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99960 * 2 1 4 4 H 1.48505 * 109.47194 * 264.87364 * 3 2 1 5 5 H 1.48506 * 109.47329 * 24.87254 * 3 2 1 6 6 H 1.48499 * 109.47265 * 144.87414 * 3 2 1 7 7 C 1.37873 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99601 * 6.80210 * 7 2 1 9 9 C 1.50695 * 120.00115 * 187.07537 * 7 2 1 10 10 C 1.52999 * 115.54670 * 90.34669 * 9 7 2 11 11 O 1.45201 * 109.47276 * 304.77264 * 10 9 7 12 12 C 1.34229 * 117.00347 * 176.52658 * 11 10 9 13 13 O 1.20821 * 119.99665 * 4.67534 * 12 11 10 14 14 C 1.50700 * 119.99921 * 184.67476 * 12 11 10 15 15 H 1.09004 * 112.50813 * 318.54200 * 14 12 11 16 16 C 1.52877 * 113.16453 * 188.63626 * 14 12 11 17 17 C 1.51434 * 84.73989 * 244.77830 * 16 14 12 18 18 C 1.38967 * 145.49335 * 179.97438 * 17 16 14 19 19 C 1.37941 * 120.35241 * 179.97438 * 18 17 16 20 20 C 1.38464 * 120.15011 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.15243 * 179.97438 * 20 19 18 22 22 C 1.38400 * 119.69780 * 359.97438 * 20 19 18 23 23 C 1.38206 * 120.10063 * 0.02562 * 22 20 19 24 24 C 1.52999 * 117.50292 * 304.63503 * 9 7 2 25 25 C 1.53004 * 117.49910 * 236.00828 * 9 7 2 26 26 H 0.97005 * 120.00103 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47814 * 64.78076 * 10 9 7 28 28 H 1.09007 * 109.47271 * 184.77982 * 10 9 7 29 29 H 1.09001 * 113.99190 * 358.72402 * 16 14 12 30 30 H 1.09000 * 113.98832 * 130.83258 * 16 14 12 31 31 H 1.08003 * 119.82854 * 359.96673 * 18 17 16 32 32 H 1.07996 * 119.92335 * 180.02562 * 19 18 17 33 33 H 1.07998 * 119.94730 * 179.97438 * 22 20 19 34 34 H 1.09001 * 117.49370 * 359.97438 * 24 9 7 35 35 H 1.08990 * 117.49915 * 145.01780 * 24 9 7 36 36 H 1.08999 * 117.49912 * 214.98168 * 25 9 7 37 37 H 1.08997 * 117.50045 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6049 1.9839 -1.3945 5 1 1.3965 2.6816 0.5889 6 1 3.4883 1.4739 0.8056 7 6 2.0045 -1.1940 0.0005 8 1 1.4702 -2.1261 -0.1098 9 6 3.5029 -1.1988 0.1613 10 6 4.0117 -1.2937 1.6011 11 8 3.4319 -0.2221 2.3909 12 6 3.7222 -0.2052 3.7014 13 8 4.5035 -1.0060 4.1574 14 6 3.0737 0.8128 4.6037 15 1 3.0199 1.8011 4.1470 16 6 3.6660 0.8314 6.0129 17 6 2.2917 0.3656 6.4461 18 6 1.4931 0.0004 7.5231 19 6 0.1806 -0.3735 7.3224 20 6 -0.3508 -0.3878 6.0439 21 9 -1.6362 -0.7545 5.8473 22 6 0.4408 -0.0249 4.9682 23 6 1.7558 0.3495 5.1705 24 6 4.3219 -0.3630 -0.8243 25 6 4.3279 -1.8896 -0.9265 26 1 -0.4850 0.8401 -0.0004 27 1 3.7233 -2.2552 2.0259 28 1 5.0980 -1.2041 1.6092 29 1 4.4539 0.0953 6.1722 30 1 3.9293 1.8271 6.3698 31 1 1.9022 0.0091 8.5226 32 1 -0.4340 -0.6556 8.1645 33 1 0.0307 -0.0350 3.9692 34 1 3.7769 0.1901 -1.5893 35 1 5.2234 0.1197 -0.4471 36 1 5.2333 -2.4112 -0.6164 37 1 3.7868 -2.3410 -1.7581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796731827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:10 Heat of formation + Delta-G solvation = -33.051232 kcal Electronic energy + Delta-G solvation = -22912.718005 eV Core-core repulsion = 19344.261347 eV Total energy + Delta-G solvation = -3568.456658 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.80261 -41.10995 -39.33642 -37.18517 -35.61941 -34.94862 -32.08364 -30.87938 -28.17576 -27.05759 -25.60760 -24.90023 -22.70263 -21.80471 -21.19127 -19.74487 -19.12398 -17.66611 -17.28126 -16.77843 -16.41496 -16.02055 -15.53212 -15.41147 -15.17160 -14.72748 -14.29685 -14.03777 -13.58645 -13.36089 -12.97732 -12.73133 -12.66685 -12.20797 -12.06623 -11.81996 -11.76448 -11.47813 -11.20987 -10.96105 -10.67215 -10.44700 -10.33463 -10.11257 -9.99104 -9.42019 -9.17133 -8.99231 -8.67450 -8.49818 -8.40815 -6.09458 -4.14727 1.02466 1.17367 2.48235 3.04231 3.36447 3.44299 3.53983 3.57122 3.84204 4.15766 4.33615 4.49851 4.50796 4.76088 4.95923 5.11038 5.17478 5.20173 5.26052 5.48886 5.58162 5.63107 5.67564 5.86181 5.88404 5.94479 5.95641 6.08445 6.11921 6.13219 6.24841 6.37422 6.56696 6.60643 6.82836 6.84835 7.00017 7.10820 7.69806 8.22168 8.45889 8.90741 9.54832 11.01256 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.005860 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.217347 B = 4776.930302 C = 5597.242983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.089 3.911 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.243 1.243 7 C -0.493 4.493 8 H 0.077 0.923 9 C -0.004 4.004 10 C 0.110 3.890 11 O -0.316 6.316 12 C 0.469 3.531 13 O -0.518 6.518 14 C -0.042 4.042 15 H 0.128 0.872 16 C -0.056 4.056 17 C -0.129 4.129 18 C -0.075 4.075 19 C -0.146 4.146 20 C 0.101 3.899 21 F -0.134 7.134 22 C -0.106 4.106 23 C -0.089 4.089 24 C -0.202 4.202 25 C -0.168 4.168 26 H 0.264 0.736 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 3.205 13.206 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.114 4.114 3 Si 0.711 3.289 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.167 1.167 7 C -0.530 4.530 8 H 0.095 0.905 9 C -0.005 4.005 10 C 0.036 3.964 11 O -0.230 6.230 12 C 0.312 3.688 13 O -0.408 6.408 14 C -0.061 4.061 15 H 0.146 0.854 16 C -0.092 4.092 17 C -0.129 4.129 18 C -0.093 4.093 19 C -0.165 4.165 20 C 0.082 3.918 21 F -0.113 7.113 22 C -0.124 4.124 23 C -0.090 4.090 24 C -0.239 4.239 25 C -0.205 4.205 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.365 3.041 13.284 14.646 hybrid contribution 0.026 0.729 -0.255 0.773 sum 5.391 3.770 13.030 14.596 Atomic orbital electron populations 1.69920 1.06499 1.27213 1.49491 1.24920 0.94447 0.99118 0.92952 0.86837 0.81149 0.82809 0.78081 1.21281 1.22675 1.16722 1.20130 0.86583 0.94811 1.51459 0.90484 1.19382 0.95135 1.00640 0.85325 1.22846 0.94528 0.87660 0.91352 1.86732 1.67756 1.50133 1.18419 1.22985 0.79144 0.83701 0.82941 1.90587 1.34131 1.39641 1.76421 1.21021 0.90970 0.99248 0.94883 0.85374 1.21782 0.94008 1.03215 0.90220 1.22343 0.96842 0.99795 0.93940 1.20262 0.92100 0.98467 0.98468 1.20953 0.96220 1.03594 0.95756 1.17313 0.79443 1.01316 0.93756 1.91522 1.34667 1.89150 1.95947 1.20347 0.92477 0.99612 1.00004 1.20772 0.92731 0.99461 0.96001 1.23048 1.01973 0.93680 1.05235 1.22864 1.00947 0.94342 1.02388 0.92609 0.91572 0.93371 0.86755 0.87611 0.85251 0.84393 0.83570 0.89156 0.90664 0.90719 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 2 C 0.09 2.51 5.43 -17.82 -0.10 2.41 16 3 Si 0.88 21.61 23.55 -169.99 -4.00 17.61 16 4 H -0.29 -6.92 6.90 56.52 0.39 -6.53 16 5 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.24 -5.62 5.51 56.52 0.31 -5.31 16 7 C -0.49 -13.56 9.22 -34.44 -0.32 -13.88 16 8 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 9 C 0.00 -0.09 1.41 -155.66 -0.22 -0.31 16 10 C 0.11 2.35 5.35 37.16 0.20 2.55 16 11 O -0.32 -6.91 7.31 -39.26 -0.29 -7.19 16 12 C 0.47 8.91 7.44 36.01 0.27 9.18 16 13 O -0.52 -10.30 15.45 -18.75 -0.29 -10.59 16 14 C -0.04 -0.64 4.26 -96.57 -0.41 -1.05 16 15 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 16 C -0.06 -0.65 7.91 -27.59 -0.22 -0.87 16 17 C -0.13 -1.70 7.32 -107.56 -0.79 -2.49 16 18 C -0.07 -0.86 10.04 -39.42 -0.40 -1.25 16 19 C -0.15 -1.78 10.01 -39.61 -0.40 -2.17 16 20 C 0.10 1.52 7.31 -39.44 -0.29 1.23 16 21 F -0.13 -2.12 17.27 2.25 0.04 -2.08 16 22 C -0.11 -1.78 10.02 -39.53 -0.40 -2.18 16 23 C -0.09 -1.43 7.05 -104.56 -0.74 -2.16 16 24 C -0.20 -4.22 7.21 -26.73 -0.19 -4.42 16 25 C -0.17 -3.29 9.96 -26.73 -0.27 -3.56 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.07 1.42 8.12 -51.93 -0.42 0.99 16 28 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 29 H 0.11 1.38 7.05 -51.93 -0.37 1.02 16 30 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 32 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.15 2.71 8.06 -52.49 -0.42 2.29 16 34 H 0.09 1.99 6.24 -51.93 -0.32 1.67 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -31.40 317.73 -7.81 -39.21 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.57 Total: 3.20 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -4.26 Total: -18.98 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.77 Total: -25.97 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.58 Total: -17.78 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.00 Total: 17.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.40 -7.81 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796731827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.157 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds