Wall clock time and date at job start Tue Mar 31 2020 08:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99960 * 2 1 4 4 H 1.48505 * 109.47194 * 264.87364 * 3 2 1 5 5 H 1.48506 * 109.47329 * 24.87254 * 3 2 1 6 6 H 1.48499 * 109.47265 * 144.87414 * 3 2 1 7 7 C 1.37873 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99601 * 6.80210 * 7 2 1 9 9 C 1.50695 * 120.00115 * 187.07537 * 7 2 1 10 10 C 1.52999 * 115.54670 * 90.34669 * 9 7 2 11 11 O 1.45201 * 109.47276 * 304.77264 * 10 9 7 12 12 C 1.34229 * 117.00347 * 176.52658 * 11 10 9 13 13 O 1.20821 * 119.99665 * 4.67534 * 12 11 10 14 14 C 1.50700 * 119.99921 * 184.67476 * 12 11 10 15 15 H 1.09004 * 112.50813 * 318.54200 * 14 12 11 16 16 C 1.52877 * 113.16453 * 188.63626 * 14 12 11 17 17 C 1.51434 * 84.73989 * 244.77830 * 16 14 12 18 18 C 1.38967 * 145.49335 * 179.97438 * 17 16 14 19 19 C 1.37941 * 120.35241 * 179.97438 * 18 17 16 20 20 C 1.38464 * 120.15011 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.15243 * 179.97438 * 20 19 18 22 22 C 1.38400 * 119.69780 * 359.97438 * 20 19 18 23 23 C 1.38206 * 120.10063 * 0.02562 * 22 20 19 24 24 C 1.52999 * 117.50292 * 304.63503 * 9 7 2 25 25 C 1.53004 * 117.49910 * 236.00828 * 9 7 2 26 26 H 0.97005 * 120.00103 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47814 * 64.78076 * 10 9 7 28 28 H 1.09007 * 109.47271 * 184.77982 * 10 9 7 29 29 H 1.09001 * 113.99190 * 358.72402 * 16 14 12 30 30 H 1.09000 * 113.98832 * 130.83258 * 16 14 12 31 31 H 1.08003 * 119.82854 * 359.96673 * 18 17 16 32 32 H 1.07996 * 119.92335 * 180.02562 * 19 18 17 33 33 H 1.07998 * 119.94730 * 179.97438 * 22 20 19 34 34 H 1.09001 * 117.49370 * 359.97438 * 24 9 7 35 35 H 1.08990 * 117.49915 * 145.01780 * 24 9 7 36 36 H 1.08999 * 117.49912 * 214.98168 * 25 9 7 37 37 H 1.08997 * 117.50045 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6049 1.9839 -1.3945 5 1 1.3965 2.6816 0.5889 6 1 3.4883 1.4739 0.8056 7 6 2.0045 -1.1940 0.0005 8 1 1.4702 -2.1261 -0.1098 9 6 3.5029 -1.1988 0.1613 10 6 4.0117 -1.2937 1.6011 11 8 3.4319 -0.2221 2.3909 12 6 3.7222 -0.2052 3.7014 13 8 4.5035 -1.0060 4.1574 14 6 3.0737 0.8128 4.6037 15 1 3.0199 1.8011 4.1470 16 6 3.6660 0.8314 6.0129 17 6 2.2917 0.3656 6.4461 18 6 1.4931 0.0004 7.5231 19 6 0.1806 -0.3735 7.3224 20 6 -0.3508 -0.3878 6.0439 21 9 -1.6362 -0.7545 5.8473 22 6 0.4408 -0.0249 4.9682 23 6 1.7558 0.3495 5.1705 24 6 4.3219 -0.3630 -0.8243 25 6 4.3279 -1.8896 -0.9265 26 1 -0.4850 0.8401 -0.0004 27 1 3.7233 -2.2552 2.0259 28 1 5.0980 -1.2041 1.6092 29 1 4.4539 0.0953 6.1722 30 1 3.9293 1.8271 6.3698 31 1 1.9022 0.0091 8.5226 32 1 -0.4340 -0.6556 8.1645 33 1 0.0307 -0.0350 3.9692 34 1 3.7769 0.1901 -1.5893 35 1 5.2234 0.1197 -0.4471 36 1 5.2333 -2.4112 -0.6164 37 1 3.7868 -2.3410 -1.7581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796731827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:08 Heat of formation + Delta-G solvation = -50.488460 kcal Electronic energy + Delta-G solvation = -22913.474140 eV Core-core repulsion = 19344.261347 eV Total energy + Delta-G solvation = -3569.212793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -50.00474 -42.32932 -40.72518 -38.83353 -37.15056 -36.12148 -34.24651 -31.96039 -29.57103 -28.42562 -27.46691 -26.22785 -23.89489 -23.39290 -22.37937 -21.06397 -20.94315 -19.02683 -18.73463 -18.34924 -17.70832 -17.50629 -17.10574 -16.70205 -16.53622 -16.28217 -15.71054 -15.32723 -14.83933 -14.71706 -14.64391 -14.28680 -14.17348 -13.71012 -13.42981 -13.08514 -13.02192 -12.82868 -12.80901 -12.50439 -12.12486 -12.09249 -11.91488 -11.66301 -11.56519 -11.32966 -11.00996 -10.65541 -10.28246 -10.09964 -9.58091 -8.29130 -6.38278 -0.05329 0.07059 1.05070 1.30511 1.41038 1.59278 1.79024 2.43409 2.45047 2.72489 3.06203 3.11825 3.16617 3.29554 3.45755 3.72878 3.91154 3.99675 4.09950 4.18711 4.23464 4.33391 4.38231 4.43185 4.55830 4.60850 4.76850 4.80358 4.90397 4.98002 4.98479 5.03641 5.11797 5.16536 5.40728 5.47606 5.55650 5.67486 5.78630 6.23817 6.64655 6.75151 7.35119 8.85419 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.005860 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.217347 B = 4776.930302 C = 5597.242983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.035 3.965 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.305 1.305 6 H -0.216 1.216 7 C -0.495 4.495 8 H 0.028 0.972 9 C -0.039 4.039 10 C 0.114 3.886 11 O -0.342 6.342 12 C 0.465 3.535 13 O -0.529 6.529 14 C -0.051 4.051 15 H 0.143 0.857 16 C -0.033 4.033 17 C -0.118 4.118 18 C -0.063 4.063 19 C -0.131 4.131 20 C 0.079 3.921 21 F -0.147 7.147 22 C -0.138 4.138 23 C -0.129 4.129 24 C -0.193 4.193 25 C -0.146 4.146 26 H 0.264 0.736 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.150 0.850 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.692 4.525 15.798 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.203 1.203 5 H -0.233 1.233 6 H -0.139 1.139 7 C -0.532 4.532 8 H 0.046 0.954 9 C -0.040 4.040 10 C 0.041 3.959 11 O -0.258 6.258 12 C 0.309 3.691 13 O -0.420 6.420 14 C -0.070 4.070 15 H 0.161 0.839 16 C -0.069 4.069 17 C -0.118 4.118 18 C -0.080 4.080 19 C -0.149 4.149 20 C 0.059 3.941 21 F -0.125 7.125 22 C -0.157 4.157 23 C -0.129 4.129 24 C -0.230 4.230 25 C -0.183 4.183 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.168 0.832 31 H 0.194 0.806 32 H 0.190 0.810 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.718 4.341 15.874 18.624 hybrid contribution -1.075 0.178 -1.049 1.512 sum 7.643 4.518 14.826 17.281 Atomic orbital electron populations 1.70071 1.08524 1.27990 1.51937 1.25766 0.95008 1.02894 0.92647 0.85915 0.80712 0.78006 0.78750 1.20294 1.23335 1.13877 1.20299 0.89626 0.92823 1.50461 0.95402 1.19301 0.92622 1.04784 0.87309 1.22699 0.95907 0.87259 0.90083 1.86714 1.68521 1.50369 1.20165 1.23724 0.78823 0.84281 0.82223 1.90561 1.34786 1.40366 1.76282 1.21385 0.90843 0.98622 0.96162 0.83924 1.21872 0.92654 1.05559 0.86781 1.22678 0.97502 0.98632 0.92974 1.20767 0.91229 0.96006 1.00038 1.21370 0.96970 1.01652 0.94958 1.17598 0.79046 1.02575 0.94836 1.91481 1.35470 1.89450 1.96148 1.20265 0.93993 1.02479 0.98931 1.20993 0.92511 1.01057 0.98341 1.23081 1.01997 0.94514 1.03375 1.22949 1.01143 0.94060 1.00170 0.92778 0.92980 0.90449 0.86676 0.83202 0.80631 0.80956 0.87696 0.90556 0.87561 0.86903 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 2 C 0.04 2.06 5.43 84.65 0.46 2.52 16 3 Si 0.94 45.24 23.55 68.60 1.62 46.86 16 4 H -0.28 -12.79 6.90 99.48 0.69 -12.10 16 5 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 6 H -0.22 -9.38 5.51 99.48 0.55 -8.83 16 7 C -0.49 -28.54 9.22 25.60 0.24 -28.30 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C -0.04 -1.78 1.41 -52.93 -0.07 -1.86 16 10 C 0.11 4.78 5.35 71.98 0.39 5.16 16 11 O -0.34 -14.84 7.31 -51.41 -0.38 -15.22 16 12 C 0.47 17.24 7.44 71.24 0.53 17.77 16 13 O -0.53 -20.29 15.45 21.98 0.34 -19.95 16 14 C -0.05 -1.48 4.26 -14.65 -0.06 -1.54 16 15 H 0.14 3.58 8.14 -2.39 -0.02 3.56 16 16 C -0.03 -0.63 7.91 30.04 0.24 -0.40 16 17 C -0.12 -2.76 7.32 -21.77 -0.16 -2.92 16 18 C -0.06 -1.18 10.04 22.37 0.22 -0.96 16 19 C -0.13 -2.85 10.01 22.25 0.22 -2.63 16 20 C 0.08 2.43 7.31 22.36 0.16 2.59 16 21 F -0.15 -4.89 17.27 44.97 0.78 -4.11 16 22 C -0.14 -4.97 10.02 22.30 0.22 -4.75 16 23 C -0.13 -4.10 7.05 -19.82 -0.14 -4.24 16 24 C -0.19 -7.54 7.21 30.60 0.22 -7.32 16 25 C -0.15 -5.41 9.96 30.60 0.30 -5.11 16 26 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 27 H 0.05 2.26 8.12 -2.39 -0.02 2.24 16 28 H 0.08 2.77 8.10 -2.38 -0.02 2.75 16 29 H 0.12 2.31 7.05 -2.39 -0.02 2.30 16 30 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 34 H 0.08 3.21 6.24 -2.39 -0.01 3.20 16 35 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 37 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -74.33 317.73 6.34 -67.99 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.91 Total: 16.26 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 2.77 Total: -31.98 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.30 Total: -59.85 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.04 Total: -35.17 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.78 Total: -4.11 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.62 Total: 46.86 kcal Total: -74.33 6.34 -67.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796731827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.506 kcal (2) G-P(sol) polarization free energy of solvation -74.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds