Wall clock time and date at job start Tue Mar 31 2020 08:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99720 * 2 1 4 4 H 1.48501 * 109.47068 * 270.00013 * 3 2 1 5 5 H 1.48499 * 109.47057 * 29.99947 * 3 2 1 6 6 H 1.48498 * 109.46756 * 150.00202 * 3 2 1 7 7 C 1.37872 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00311 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99556 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46955 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00207 * 180.02562 * 11 10 9 13 13 O 1.21588 * 120.00093 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00227 * 179.97438 * 12 11 10 15 15 C 1.39984 * 119.99853 * 184.61656 * 14 12 11 16 16 C 1.38990 * 119.91645 * 324.63198 * 15 14 12 17 17 C 1.38357 * 120.14581 * 179.71960 * 16 15 14 18 18 C 1.37610 * 120.04609 * 0.55531 * 17 16 15 19 19 C 1.39776 * 120.41950 * 359.72295 * 18 17 16 20 20 C 1.38601 * 119.91116 * 144.90424 * 15 14 12 21 21 C 1.47454 * 108.04138 * 180.02562 * 19 18 17 22 22 O 1.21471 * 124.89535 * 180.02562 * 21 19 18 23 23 O 1.34340 * 110.20635 * 359.97438 * 21 19 18 24 24 C 1.45387 * 109.01913 * 0.02562 * 23 21 19 25 25 H 0.97004 * 120.00077 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47409 * 59.99823 * 9 7 2 27 27 H 1.09000 * 109.47263 * 299.99463 * 9 7 2 28 28 H 1.09007 * 109.46742 * 60.00116 * 10 9 7 29 29 H 1.08993 * 109.47604 * 300.00213 * 10 9 7 30 30 H 0.97002 * 120.00195 * 359.97438 * 11 10 9 31 31 H 0.96993 * 120.00198 * 4.61905 * 14 12 11 32 32 H 1.07995 * 119.92962 * 0.02562 * 16 15 14 33 33 H 1.07998 * 119.97457 * 180.29562 * 17 16 15 34 34 H 1.07996 * 120.13174 * 0.02562 * 20 15 14 35 35 H 1.09003 * 110.06418 * 119.24094 * 24 23 21 36 36 H 1.08994 * 110.06436 * 240.70111 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4865 -2.6365 -0.0009 12 6 6.1604 -3.8036 -0.0014 13 8 5.5525 -4.8566 -0.0022 14 7 7.5082 -3.8036 -0.0018 15 6 8.2081 -5.0120 -0.0998 16 6 7.7041 -6.1561 0.5074 17 6 8.3890 -7.3543 0.4086 18 6 9.5777 -7.4135 -0.2820 19 6 10.0992 -6.2694 -0.8927 20 6 9.4047 -5.0630 -0.7974 21 6 11.3666 -6.6395 -1.5491 22 8 12.0761 -5.8748 -2.1713 23 8 11.6240 -7.9442 -1.3587 24 6 10.5525 -8.5282 -0.5684 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6800 -0.8912 28 1 3.6578 -3.1505 -0.8908 29 1 3.6586 -3.1502 0.8891 30 1 5.9715 -1.7964 -0.0014 31 1 7.9932 -2.9664 0.0658 32 1 6.7734 -6.1110 1.0533 33 1 7.9924 -8.2427 0.8775 34 1 9.7981 -4.1725 -1.2649 35 1 10.0602 -9.3200 -1.1330 36 1 10.9506 -8.9267 0.3647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808891114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:39 Heat of formation + Delta-G solvation = -71.935522 kcal Electronic energy + Delta-G solvation = -21454.391519 eV Core-core repulsion = 17904.168673 eV Total energy + Delta-G solvation = -3550.222846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.91383 -40.51073 -38.47516 -37.65416 -35.41651 -34.78822 -32.93322 -31.55944 -31.23738 -29.90950 -27.33588 -25.09791 -24.50347 -22.62766 -21.49129 -20.93121 -20.70066 -18.60128 -18.32325 -17.36173 -17.13269 -16.92905 -16.51929 -15.67841 -15.38015 -15.16576 -14.67246 -14.26254 -14.14648 -14.05943 -14.03085 -13.94821 -13.54427 -13.09374 -12.67527 -12.53431 -12.00648 -11.58510 -11.46956 -11.28458 -10.71447 -10.54213 -10.48516 -10.33685 -10.09267 -9.93574 -9.45954 -9.40231 -8.87572 -8.67506 -8.37864 -6.17199 -4.18086 0.24222 0.78388 2.14638 2.44174 2.72619 3.03425 3.20404 3.27779 3.29101 3.39584 3.43152 3.74065 4.17398 4.31716 4.33995 4.69134 4.69962 4.82363 5.02378 5.07443 5.15561 5.33417 5.57528 5.72468 5.80853 5.96991 6.04976 6.10035 6.26372 6.44913 6.55349 6.56868 6.75057 7.08058 7.10119 7.13562 7.58683 7.92949 8.36662 8.51412 8.86689 9.42409 10.95690 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.040240 B = 0.002567 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.654229 B =10906.534453 C =11434.074863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.146 3.854 11 N -0.732 5.732 12 C 0.699 3.301 13 O -0.576 6.576 14 N -0.692 5.692 15 C 0.172 3.828 16 C -0.079 4.079 17 C -0.078 4.078 18 C -0.126 4.126 19 C -0.179 4.179 20 C -0.067 4.067 21 C 0.525 3.475 22 O -0.454 6.454 23 O -0.321 6.321 24 C 0.095 3.905 25 H 0.265 0.735 26 H 0.022 0.978 27 H 0.018 0.982 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.395 0.605 31 H 0.409 0.591 32 H 0.158 0.842 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.436 -13.462 2.109 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.060 4.060 10 C 0.024 3.976 11 N -0.385 5.385 12 C 0.400 3.600 13 O -0.453 6.453 14 N -0.340 5.340 15 C 0.075 3.925 16 C -0.099 4.099 17 C -0.096 4.096 18 C -0.127 4.127 19 C -0.181 4.181 20 C -0.088 4.088 21 C 0.367 3.633 22 O -0.340 6.340 23 O -0.236 6.236 24 C 0.021 3.979 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.229 0.771 31 H 0.245 0.755 32 H 0.176 0.824 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.134 0.866 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 21.102 -13.995 1.729 25.380 hybrid contribution 0.612 1.868 0.019 1.966 sum 21.714 -12.126 1.748 24.932 Atomic orbital electron populations 1.69900 1.06294 1.27138 1.50154 1.24999 0.94773 0.99163 0.94308 0.86748 0.80211 0.83538 0.78525 1.20204 1.21232 1.19127 1.20880 0.88489 0.94957 1.51963 0.90541 1.19806 0.98079 0.91150 0.96929 1.21499 0.73944 1.00301 1.01865 1.45582 1.09320 1.06015 1.77574 1.15993 0.80553 0.85360 0.78124 1.90910 1.67187 1.30161 1.57061 1.42708 1.05718 1.07945 1.77609 1.17350 0.91956 0.86774 0.96377 1.21712 1.00440 0.90994 0.96760 1.20187 0.92439 0.98516 0.98504 1.20757 0.96765 0.95297 0.99909 1.20430 0.97781 0.95346 1.04547 1.20494 0.94213 0.97303 0.96804 1.20458 0.84180 0.80991 0.77647 1.90892 1.53607 1.51036 1.38418 1.87232 1.45684 1.23704 1.66974 1.22384 0.84742 0.94118 0.96653 0.92471 0.95936 0.96365 0.91766 0.91728 0.77140 0.75508 0.82444 0.84275 0.84326 0.86552 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 7 C -0.52 -14.17 9.66 -34.44 -0.33 -14.51 16 8 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 16 10 C 0.15 2.76 5.61 -4.04 -0.02 2.73 16 11 N -0.73 -10.73 5.56 -65.23 -0.36 -11.09 16 12 C 0.70 10.22 8.40 -86.92 -0.73 9.49 16 13 O -0.58 -10.37 13.78 5.29 0.07 -10.29 16 14 N -0.69 -7.35 5.34 -14.25 -0.08 -7.43 16 15 C 0.17 1.85 6.29 -83.72 -0.53 1.32 16 16 C -0.08 -0.84 8.69 -39.26 -0.34 -1.18 16 17 C -0.08 -0.62 10.02 -39.77 -0.40 -1.02 16 18 C -0.13 -1.01 6.38 -104.22 -0.67 -1.68 16 19 C -0.18 -1.83 6.27 -105.09 -0.66 -2.48 16 20 C -0.07 -0.67 10.02 -38.97 -0.39 -1.06 16 21 C 0.53 6.15 8.58 34.48 0.30 6.44 16 22 O -0.45 -6.72 18.04 -18.92 -0.34 -7.06 16 23 O -0.32 -3.11 11.13 -39.17 -0.44 -3.55 16 24 C 0.10 0.54 7.93 36.07 0.29 0.82 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 27 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 28 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.40 4.63 8.49 -40.82 -0.35 4.28 16 31 H 0.41 2.99 8.84 -40.82 -0.36 2.63 16 32 H 0.16 1.92 6.23 -52.49 -0.33 1.60 16 33 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 316.82 15.07 4.77 4.77 Total: -1.00 -34.17 316.82 -7.89 -42.05 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -3.92 Total: 2.62 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -3.70 Total: 0.14 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.33 Total: -44.45 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.70 Total: -20.91 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.17 -7.89 -42.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808891114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.881 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds