Wall clock time and date at job start Tue Mar 31 2020 08:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99720 * 2 1 4 4 H 1.48501 * 109.47068 * 270.00013 * 3 2 1 5 5 H 1.48499 * 109.47057 * 29.99947 * 3 2 1 6 6 H 1.48498 * 109.46756 * 150.00202 * 3 2 1 7 7 C 1.37872 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00311 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99556 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46955 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00207 * 180.02562 * 11 10 9 13 13 O 1.21588 * 120.00093 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00227 * 179.97438 * 12 11 10 15 15 C 1.39984 * 119.99853 * 184.61656 * 14 12 11 16 16 C 1.38990 * 119.91645 * 324.63198 * 15 14 12 17 17 C 1.38357 * 120.14581 * 179.71960 * 16 15 14 18 18 C 1.37610 * 120.04609 * 0.55531 * 17 16 15 19 19 C 1.39776 * 120.41950 * 359.72295 * 18 17 16 20 20 C 1.38601 * 119.91116 * 144.90424 * 15 14 12 21 21 C 1.47454 * 108.04138 * 180.02562 * 19 18 17 22 22 O 1.21471 * 124.89535 * 180.02562 * 21 19 18 23 23 O 1.34340 * 110.20635 * 359.97438 * 21 19 18 24 24 C 1.45387 * 109.01913 * 0.02562 * 23 21 19 25 25 H 0.97004 * 120.00077 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47409 * 59.99823 * 9 7 2 27 27 H 1.09000 * 109.47263 * 299.99463 * 9 7 2 28 28 H 1.09007 * 109.46742 * 60.00116 * 10 9 7 29 29 H 1.08993 * 109.47604 * 300.00213 * 10 9 7 30 30 H 0.97002 * 120.00195 * 359.97438 * 11 10 9 31 31 H 0.96993 * 120.00198 * 4.61905 * 14 12 11 32 32 H 1.07995 * 119.92962 * 0.02562 * 16 15 14 33 33 H 1.07998 * 119.97457 * 180.29562 * 17 16 15 34 34 H 1.07996 * 120.13174 * 0.02562 * 20 15 14 35 35 H 1.09003 * 110.06418 * 119.24094 * 24 23 21 36 36 H 1.08994 * 110.06436 * 240.70111 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4865 -2.6365 -0.0009 12 6 6.1604 -3.8036 -0.0014 13 8 5.5525 -4.8566 -0.0022 14 7 7.5082 -3.8036 -0.0018 15 6 8.2081 -5.0120 -0.0998 16 6 7.7041 -6.1561 0.5074 17 6 8.3890 -7.3543 0.4086 18 6 9.5777 -7.4135 -0.2820 19 6 10.0992 -6.2694 -0.8927 20 6 9.4047 -5.0630 -0.7974 21 6 11.3666 -6.6395 -1.5491 22 8 12.0761 -5.8748 -2.1713 23 8 11.6240 -7.9442 -1.3587 24 6 10.5525 -8.5282 -0.5684 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8745 -0.6800 -0.8912 28 1 3.6578 -3.1505 -0.8908 29 1 3.6586 -3.1502 0.8891 30 1 5.9715 -1.7964 -0.0014 31 1 7.9932 -2.9664 0.0658 32 1 6.7734 -6.1110 1.0533 33 1 7.9924 -8.2427 0.8775 34 1 9.7981 -4.1725 -1.2649 35 1 10.0602 -9.3200 -1.1330 36 1 10.9506 -8.9267 0.3647 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808891114.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:25 Heat of formation + Delta-G solvation = -96.361917 kcal Electronic energy + Delta-G solvation = -21455.450726 eV Core-core repulsion = 17904.168673 eV Total energy + Delta-G solvation = -3551.282054 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 12.39 seconds Orbital eigenvalues (eV) -42.67071 -41.56021 -39.39529 -38.53923 -36.77369 -35.85108 -34.81705 -32.48387 -32.27273 -31.23628 -28.10504 -26.71753 -25.31380 -23.66608 -22.58530 -22.30469 -21.67845 -19.72651 -19.23161 -18.87668 -18.17027 -17.83978 -17.43624 -16.77592 -16.49425 -16.19184 -16.01692 -15.63294 -15.41593 -15.16172 -14.80528 -14.73510 -14.62903 -14.54828 -13.94222 -13.35312 -13.28183 -13.06529 -12.75825 -12.24592 -12.17632 -12.10863 -11.76211 -11.54561 -11.54382 -11.38190 -11.16692 -10.78296 -10.21640 -10.15018 -9.23258 -8.29251 -6.36402 -0.54388 0.06171 1.30070 1.40183 1.42206 1.43880 1.53241 1.96087 2.02550 2.37249 2.58958 2.68137 3.06208 3.10354 3.15979 3.69212 3.98701 4.15515 4.29218 4.33969 4.37718 4.45560 4.52246 4.66313 4.76465 4.84814 5.01110 5.09012 5.12416 5.29361 5.41198 5.42595 5.53601 5.64257 5.75397 5.86730 6.23195 6.25135 6.71216 6.92454 7.28094 7.39164 8.87386 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.040240 B = 0.002567 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.654229 B =10906.534453 C =11434.074863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.235 1.235 7 C -0.538 4.538 8 H 0.031 0.969 9 C -0.014 4.014 10 C 0.164 3.836 11 N -0.723 5.723 12 C 0.701 3.299 13 O -0.613 6.613 14 N -0.673 5.673 15 C 0.151 3.849 16 C -0.091 4.091 17 C -0.071 4.071 18 C -0.107 4.107 19 C -0.199 4.199 20 C -0.064 4.064 21 C 0.526 3.474 22 O -0.498 6.498 23 O -0.328 6.328 24 C 0.092 3.908 25 H 0.267 0.733 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.413 0.587 31 H 0.426 0.574 32 H 0.140 0.860 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.037 -13.695 2.615 27.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.158 1.158 7 C -0.576 4.576 8 H 0.049 0.951 9 C -0.051 4.051 10 C 0.040 3.960 11 N -0.378 5.378 12 C 0.401 3.599 13 O -0.493 6.493 14 N -0.323 5.323 15 C 0.056 3.944 16 C -0.111 4.111 17 C -0.089 4.089 18 C -0.108 4.108 19 C -0.202 4.202 20 C -0.085 4.085 21 C 0.371 3.629 22 O -0.387 6.387 23 O -0.243 6.243 24 C 0.019 3.981 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.250 0.750 31 H 0.265 0.735 32 H 0.158 0.842 33 H 0.190 0.810 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 23.774 -14.246 2.251 27.807 hybrid contribution -0.225 1.723 -0.107 1.741 sum 23.549 -12.523 2.143 26.758 Atomic orbital electron populations 1.70075 1.08591 1.28387 1.52043 1.26069 0.95659 1.03837 0.93783 0.85556 0.79747 0.77447 0.79204 1.19228 1.21495 1.15757 1.21249 0.91587 0.93386 1.51382 0.95071 1.19661 0.94345 0.92966 0.98164 1.20955 0.76434 0.98345 1.00306 1.45143 1.07610 1.07138 1.77877 1.16030 0.81616 0.84528 0.77711 1.90892 1.68392 1.31428 1.58569 1.42380 1.04194 1.09035 1.76671 1.17433 0.92471 0.86814 0.97692 1.21744 1.00183 0.92193 0.97017 1.20430 0.91932 0.98621 0.97902 1.21025 0.96494 0.95373 0.97952 1.20475 0.97698 0.96366 1.05627 1.20538 0.93760 0.97838 0.96360 1.20637 0.84068 0.81356 0.76888 1.90859 1.54972 1.52367 1.40544 1.87213 1.47159 1.22703 1.67266 1.22881 0.83549 0.93325 0.98308 0.92380 0.94311 0.94676 0.93673 0.93287 0.75047 0.73514 0.84226 0.81035 0.83498 0.83447 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.30 13.96 21.45 0.30 -58.00 16 2 C 0.00 0.20 5.47 84.65 0.46 0.67 16 3 Si 0.96 41.17 27.47 68.60 1.88 43.05 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.23 -8.82 6.54 99.48 0.65 -8.17 16 7 C -0.54 -29.65 9.66 25.60 0.25 -29.40 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C -0.01 -0.57 4.16 29.85 0.12 -0.44 16 10 C 0.16 6.16 5.61 86.38 0.48 6.65 16 11 N -0.72 -20.15 5.56 -478.54 -2.66 -22.82 16 12 C 0.70 19.88 8.40 179.05 1.50 21.39 16 13 O -0.61 -22.15 13.78 -3.99 -0.06 -22.21 16 14 N -0.67 -13.38 5.34 -317.25 -1.69 -15.08 16 15 C 0.15 3.08 6.29 38.11 0.24 3.32 16 16 C -0.09 -1.83 8.69 22.48 0.20 -1.63 16 17 C -0.07 -0.94 10.02 22.15 0.22 -0.72 16 18 C -0.11 -1.40 6.38 -19.60 -0.13 -1.53 16 19 C -0.20 -3.76 6.27 -20.17 -0.13 -3.88 16 20 C -0.06 -1.20 10.02 22.67 0.23 -0.98 16 21 C 0.53 11.80 8.58 70.25 0.60 12.41 16 22 O -0.50 -14.84 18.04 19.62 0.35 -14.49 16 23 O -0.33 -5.65 11.13 -52.85 -0.59 -6.24 16 24 C 0.09 0.68 7.93 71.28 0.56 1.24 16 25 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 26 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 27 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 28 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.41 8.54 8.49 -92.71 -0.79 7.76 16 31 H 0.43 5.36 8.84 -92.71 -0.82 4.54 16 32 H 0.14 3.38 6.23 -2.91 -0.02 3.36 16 33 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.15 0.13 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -78.02 316.82 1.65 -76.37 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -0.51 Total: 12.30 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 4.62 Total: 7.10 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -4.06 Total: -95.89 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.29 Total: -42.93 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.88 Total: 43.05 kcal Total: -78.02 1.65 -76.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808891114.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.989 kcal (2) G-P(sol) polarization free energy of solvation -78.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.40 seconds