Wall clock time and date at job start Tue Mar 31 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48493 * 109.47091 * 269.99940 * 3 2 1 5 5 H 1.48502 * 109.46767 * 30.00265 * 3 2 1 6 6 H 1.48499 * 109.47009 * 150.00083 * 3 2 1 7 7 C 1.39868 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00319 * 197.96490 * 7 2 1 9 9 C 1.41137 * 119.99829 * 17.96774 * 7 2 1 10 10 C 1.40885 * 120.15580 * 204.88540 * 9 7 2 11 11 C 1.36339 * 119.83450 * 180.25159 * 10 9 7 12 12 C 1.39568 * 120.16104 * 359.49800 * 11 10 9 13 13 N 1.38858 * 119.84196 * 180.25499 * 12 11 10 14 14 C 1.46494 * 120.00050 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47271 * 179.97438 * 14 13 12 16 16 C 1.38535 * 120.78354 * 259.72351 * 15 14 13 17 17 C 1.38514 * 119.16042 * 179.77583 * 16 15 14 18 18 F 1.35099 * 119.61610 * 180.27084 * 17 16 15 19 19 N 1.32037 * 120.75923 * 0.50779 * 17 16 15 20 20 C 1.31906 * 121.71123 * 359.74091 * 19 17 16 21 21 C 1.38368 * 120.76214 * 0.02562 * 20 19 17 22 22 F 1.35104 * 120.41305 * 179.97438 * 21 20 19 23 23 C 1.39569 * 120.31576 * 0.23430 * 12 11 10 24 24 C 1.36338 * 120.16208 * 0.02562 * 23 12 11 25 25 H 0.96992 * 120.00260 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.08388 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.91554 * 179.77799 * 11 10 9 28 28 H 0.97006 * 119.99759 * 359.97438 * 13 12 11 29 29 H 1.08997 * 109.47509 * 300.00283 * 14 13 12 30 30 H 1.09007 * 109.46688 * 60.00407 * 14 13 12 31 31 H 1.07998 * 120.42045 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.61679 * 179.97438 * 20 19 17 33 33 H 1.07999 * 119.91639 * 180.02562 * 23 12 11 34 34 H 1.07992 * 120.08338 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0465 -1.4000 5 1 1.4404 2.6527 0.7001 6 1 3.5406 1.4403 0.7000 7 6 2.0085 -1.2113 0.0005 8 1 3.0489 -1.2339 0.2890 9 6 1.3544 -2.4039 -0.3760 10 6 1.8232 -3.6467 0.0935 11 6 1.1895 -4.7952 -0.2784 12 6 0.0728 -4.7409 -1.1138 13 7 -0.5707 -5.9143 -1.4842 14 6 -1.7436 -5.8613 -2.3604 15 6 -2.2489 -7.2592 -2.6084 16 6 -1.9453 -7.9246 -3.7850 17 6 -2.4235 -9.2104 -3.9759 18 9 -2.1284 -9.8699 -5.1175 19 7 -3.1684 -9.7973 -3.0571 20 6 -3.4812 -9.1919 -1.9276 21 6 -3.0352 -7.9085 -1.6655 22 9 -3.3603 -7.2949 -0.5065 23 6 -0.4006 -3.5128 -1.5782 24 6 0.2263 -2.3567 -1.2186 25 1 -0.4850 0.8400 0.0004 26 1 2.6846 -3.6899 0.7436 27 1 1.5500 -5.7489 0.0778 28 1 -0.2436 -6.7691 -1.1628 29 1 -2.5263 -5.2707 -1.8845 30 1 -1.4676 -5.4014 -3.3094 31 1 -1.3400 -7.4483 -4.5420 32 1 -4.0931 -9.7035 -1.1995 33 1 -1.2656 -3.4783 -2.2240 34 1 -0.1413 -1.4071 -1.5784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809424140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:32 Heat of formation + Delta-G solvation = -24.957327 kcal Electronic energy + Delta-G solvation = -21282.869843 eV Core-core repulsion = 17623.596609 eV Total energy + Delta-G solvation = -3659.273234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 4.72 seconds Orbital eigenvalues (eV) -49.35072 -49.22302 -40.39985 -38.05039 -35.71185 -33.71072 -32.31202 -30.84211 -29.53262 -28.94638 -26.68174 -24.25538 -24.04264 -22.65307 -21.03608 -20.06127 -18.42739 -17.94685 -17.84365 -17.25804 -16.67862 -16.22370 -15.74413 -15.11715 -15.07627 -14.95364 -14.62652 -13.96247 -13.82982 -13.75624 -13.21462 -13.06371 -12.80768 -12.70026 -12.45290 -11.93691 -11.71337 -11.35976 -11.07682 -10.88836 -10.52596 -10.29564 -10.20796 -9.74270 -9.34800 -9.31287 -9.18636 -8.64132 -7.55772 -6.69953 -6.48507 -4.09376 0.34061 0.45181 2.87000 2.95504 3.04531 3.09560 3.13003 3.16357 3.30289 3.58777 3.90720 4.02176 4.21279 4.30211 4.34268 4.71234 4.87438 5.12839 5.15190 5.41228 5.67033 5.73749 5.83667 6.13651 6.19981 6.24509 6.80002 6.87355 7.04657 7.14286 7.30215 7.45615 7.62448 7.75838 8.09749 8.19637 8.39471 8.56239 8.72310 9.01086 9.08767 10.32600 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.002975 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.601625 B = 9408.687927 C = 9566.667771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.077 3.923 10 C -0.187 4.187 11 C -0.153 4.153 12 C 0.086 3.914 13 N -0.756 5.756 14 C 0.177 3.823 15 C -0.057 4.057 16 C -0.148 4.148 17 C 0.295 3.705 18 F -0.107 7.107 19 N -0.488 5.488 20 C 0.108 3.892 21 C 0.056 3.944 22 F -0.113 7.113 23 C -0.161 4.161 24 C -0.126 4.126 25 H 0.277 0.723 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.385 0.615 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.161 0.839 32 H 0.180 0.820 33 H 0.088 0.912 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 -12.929 -5.800 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.498 4.498 8 H 0.092 0.908 9 C 0.075 3.925 10 C -0.208 4.208 11 C -0.175 4.175 12 C -0.010 4.010 13 N -0.393 5.393 14 C 0.052 3.948 15 C -0.065 4.065 16 C -0.169 4.169 17 C 0.141 3.859 18 F -0.086 7.086 19 N -0.202 5.202 20 C -0.050 4.050 21 C 0.034 3.966 22 F -0.092 7.092 23 C -0.183 4.183 24 C -0.146 4.146 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.218 0.782 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.179 0.821 32 H 0.197 0.803 33 H 0.106 0.894 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.190 -13.476 -6.060 16.433 hybrid contribution 0.653 1.184 0.289 1.383 sum -6.536 -12.293 -5.771 15.071 Atomic orbital electron populations 1.69849 1.07380 1.28724 1.37317 1.25810 0.94666 1.00951 0.92638 0.86388 0.80484 0.81109 0.79113 1.19507 1.20552 1.18831 1.19396 0.98003 0.91354 1.41002 0.90846 1.17514 0.92326 0.92014 0.90694 1.20552 1.02876 0.92548 1.04775 1.19795 0.97709 0.97122 1.02833 1.17269 0.95941 0.85160 1.02602 1.43676 1.32011 1.06362 1.57220 1.19891 0.90009 0.88799 0.96109 1.20591 0.95314 0.98166 0.92473 1.21787 1.02292 0.93601 0.99251 1.18093 0.95621 0.88391 0.83774 1.91650 1.90651 1.81170 1.45166 1.67040 1.13603 1.37533 1.01980 1.22625 0.98202 0.90538 0.93632 1.18680 1.00201 0.93232 0.84492 1.91606 1.90491 1.82314 1.44753 1.20076 1.01436 0.91896 1.04889 1.20936 0.98223 0.96441 0.98974 0.91243 0.88942 0.89561 0.78217 0.91199 0.91212 0.82138 0.80264 0.89408 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.03 10.96 55.54 0.61 -20.43 16 2 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 3 Si 0.90 18.94 29.60 -169.99 -5.03 13.91 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.47 -12.47 9.03 -37.87 -0.34 -12.81 16 8 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.08 2.05 5.57 -106.79 -0.60 1.46 16 10 C -0.19 -4.54 9.74 -39.26 -0.38 -4.93 16 11 C -0.15 -3.33 9.82 -39.77 -0.39 -3.72 16 12 C 0.09 1.80 6.67 -83.69 -0.56 1.24 16 13 N -0.76 -12.36 5.69 -59.67 -0.34 -12.70 16 14 C 0.18 2.39 4.82 -5.20 -0.03 2.36 16 15 C -0.06 -0.63 5.29 -104.27 -0.55 -1.18 16 16 C -0.15 -1.46 9.75 -39.37 -0.38 -1.84 16 17 C 0.29 3.18 8.41 -17.36 -0.15 3.03 16 18 F -0.11 -1.18 17.29 2.25 0.04 -1.14 16 19 N -0.49 -5.42 10.37 -13.54 -0.14 -5.56 16 20 C 0.11 1.03 11.17 -17.47 -0.20 0.83 16 21 C 0.06 0.61 7.29 -39.29 -0.29 0.33 16 22 F -0.11 -1.41 16.80 2.25 0.04 -1.37 16 23 C -0.16 -3.62 9.23 -39.77 -0.37 -3.99 16 24 C -0.13 -3.21 8.64 -39.26 -0.34 -3.55 16 25 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 26 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 27 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.39 5.77 8.46 -40.82 -0.35 5.43 16 29 H 0.07 1.01 7.80 -51.93 -0.41 0.60 16 30 H 0.07 0.90 7.82 -51.93 -0.41 0.49 16 31 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.09 1.76 6.68 -52.49 -0.35 1.41 16 34 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 LS Contribution 307.94 15.07 4.64 4.64 Total: -1.00 -28.24 307.94 -7.91 -36.15 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.07 Total: 7.46 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -4.65 Total: -20.96 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.13 Total: -38.69 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.51 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.24 -7.91 -36.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809424140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.189 kcal (2) G-P(sol) polarization free energy of solvation -28.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.72 seconds