Wall clock time and date at job start Tue Mar 31 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48493 * 109.47091 * 269.99940 * 3 2 1 5 5 H 1.48502 * 109.46767 * 30.00265 * 3 2 1 6 6 H 1.48499 * 109.47009 * 150.00083 * 3 2 1 7 7 C 1.39868 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00319 * 197.96490 * 7 2 1 9 9 C 1.41137 * 119.99829 * 17.96774 * 7 2 1 10 10 C 1.40885 * 120.15580 * 204.88540 * 9 7 2 11 11 C 1.36339 * 119.83450 * 180.25159 * 10 9 7 12 12 C 1.39568 * 120.16104 * 359.49800 * 11 10 9 13 13 N 1.38858 * 119.84196 * 180.25499 * 12 11 10 14 14 C 1.46494 * 120.00050 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47271 * 179.97438 * 14 13 12 16 16 C 1.38535 * 120.78354 * 259.72351 * 15 14 13 17 17 C 1.38514 * 119.16042 * 179.77583 * 16 15 14 18 18 F 1.35099 * 119.61610 * 180.27084 * 17 16 15 19 19 N 1.32037 * 120.75923 * 0.50779 * 17 16 15 20 20 C 1.31906 * 121.71123 * 359.74091 * 19 17 16 21 21 C 1.38368 * 120.76214 * 0.02562 * 20 19 17 22 22 F 1.35104 * 120.41305 * 179.97438 * 21 20 19 23 23 C 1.39569 * 120.31576 * 0.23430 * 12 11 10 24 24 C 1.36338 * 120.16208 * 0.02562 * 23 12 11 25 25 H 0.96992 * 120.00260 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.08388 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.91554 * 179.77799 * 11 10 9 28 28 H 0.97006 * 119.99759 * 359.97438 * 13 12 11 29 29 H 1.08997 * 109.47509 * 300.00283 * 14 13 12 30 30 H 1.09007 * 109.46688 * 60.00407 * 14 13 12 31 31 H 1.07998 * 120.42045 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.61679 * 179.97438 * 20 19 17 33 33 H 1.07999 * 119.91639 * 180.02562 * 23 12 11 34 34 H 1.07992 * 120.08338 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0465 -1.4000 5 1 1.4404 2.6527 0.7001 6 1 3.5406 1.4403 0.7000 7 6 2.0085 -1.2113 0.0005 8 1 3.0489 -1.2339 0.2890 9 6 1.3544 -2.4039 -0.3760 10 6 1.8232 -3.6467 0.0935 11 6 1.1895 -4.7952 -0.2784 12 6 0.0728 -4.7409 -1.1138 13 7 -0.5707 -5.9143 -1.4842 14 6 -1.7436 -5.8613 -2.3604 15 6 -2.2489 -7.2592 -2.6084 16 6 -1.9453 -7.9246 -3.7850 17 6 -2.4235 -9.2104 -3.9759 18 9 -2.1284 -9.8699 -5.1175 19 7 -3.1684 -9.7973 -3.0571 20 6 -3.4812 -9.1919 -1.9276 21 6 -3.0352 -7.9085 -1.6655 22 9 -3.3603 -7.2949 -0.5065 23 6 -0.4006 -3.5128 -1.5782 24 6 0.2263 -2.3567 -1.2186 25 1 -0.4850 0.8400 0.0004 26 1 2.6846 -3.6899 0.7436 27 1 1.5500 -5.7489 0.0778 28 1 -0.2436 -6.7691 -1.1628 29 1 -2.5263 -5.2707 -1.8845 30 1 -1.4676 -5.4014 -3.3094 31 1 -1.3400 -7.4483 -4.5420 32 1 -4.0931 -9.7035 -1.1995 33 1 -1.2656 -3.4783 -2.2240 34 1 -0.1413 -1.4071 -1.5784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809424140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:25 Heat of formation + Delta-G solvation = -40.485838 kcal Electronic energy + Delta-G solvation = -21283.543210 eV Core-core repulsion = 17623.596609 eV Total energy + Delta-G solvation = -3659.946601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -50.18199 -50.12655 -41.24616 -39.74501 -37.12258 -35.27606 -33.68571 -31.66755 -31.35369 -30.57702 -28.02679 -25.83117 -24.97123 -23.78356 -22.73334 -21.74516 -19.27924 -19.15190 -18.88089 -18.71651 -17.84390 -17.43183 -16.84079 -16.63994 -16.36269 -15.87842 -15.65803 -15.47864 -14.98508 -14.71814 -14.56817 -14.47718 -14.07189 -13.94686 -13.82036 -13.53045 -13.35790 -13.04773 -12.74862 -12.57562 -12.28114 -11.58065 -11.30559 -11.10644 -11.05377 -11.00341 -10.35654 -10.00997 -9.40230 -8.55418 -8.20791 -6.01794 -0.48471 -0.36214 1.10563 1.18974 1.41368 1.53491 1.59095 2.12640 2.27959 2.30139 2.76717 2.83505 2.87421 3.15155 3.42434 3.50244 3.85316 4.07975 4.23967 4.34194 4.43332 4.50285 4.59562 4.66133 4.83447 5.03874 5.11582 5.27240 5.33678 5.45329 5.66280 5.78631 5.94905 6.19119 6.25809 6.37745 6.63218 6.83670 7.06705 7.09038 7.24855 8.48075 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.002975 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.601625 B = 9408.687927 C = 9566.667771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.033 3.967 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.038 3.962 10 C -0.197 4.197 11 C -0.161 4.161 12 C 0.111 3.889 13 N -0.746 5.746 14 C 0.175 3.825 15 C -0.059 4.059 16 C -0.135 4.135 17 C 0.288 3.712 18 F -0.110 7.110 19 N -0.502 5.502 20 C 0.121 3.879 21 C 0.050 3.950 22 F -0.124 7.124 23 C -0.170 4.170 24 C -0.145 4.145 25 H 0.282 0.718 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.396 0.604 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.180 0.820 32 H 0.210 0.790 33 H 0.110 0.890 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -14.308 -6.374 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.179 4.179 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.537 4.537 8 H 0.085 0.915 9 C 0.035 3.965 10 C -0.217 4.217 11 C -0.183 4.183 12 C 0.012 3.988 13 N -0.382 5.382 14 C 0.051 3.949 15 C -0.068 4.068 16 C -0.157 4.157 17 C 0.135 3.865 18 F -0.089 7.089 19 N -0.216 5.216 20 C -0.038 4.038 21 C 0.028 3.972 22 F -0.103 7.103 23 C -0.192 4.192 24 C -0.165 4.165 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.230 0.770 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.197 0.803 32 H 0.226 0.774 33 H 0.128 0.872 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.664 -14.908 -6.650 18.033 hybrid contribution 0.697 1.365 0.425 1.591 sum -6.966 -13.543 -6.225 16.452 Atomic orbital electron populations 1.69908 1.08692 1.29818 1.38349 1.26591 0.95448 1.04031 0.91840 0.85302 0.79025 0.76640 0.79271 1.18901 1.19613 1.18581 1.19608 0.98048 0.92803 1.43255 0.91473 1.17830 0.93560 0.92979 0.92133 1.20747 1.03227 0.92862 1.04849 1.20085 0.97810 0.97604 1.02824 1.17340 0.94937 0.86181 1.00334 1.43695 1.32264 1.05295 1.56948 1.19948 0.88617 0.90525 0.95805 1.20330 0.96148 0.97098 0.93260 1.21853 1.01743 0.93058 0.99033 1.18208 0.95819 0.88694 0.83755 1.91646 1.90691 1.81250 1.45341 1.67093 1.13945 1.38065 1.02511 1.23020 0.97442 0.89901 0.93417 1.18816 1.00509 0.93759 0.84099 1.91584 1.90668 1.82593 1.45405 1.20259 1.02006 0.91632 1.05317 1.20877 0.98867 0.96838 0.99890 0.90722 0.88608 0.86581 0.77018 0.91943 0.90019 0.80294 0.77373 0.87197 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.19 10.96 21.82 0.24 -44.95 16 2 C 0.03 1.72 5.13 85.23 0.44 2.16 16 3 Si 0.98 39.63 29.60 68.60 2.03 41.66 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.51 -28.08 9.03 23.38 0.21 -27.87 16 8 H 0.07 3.63 7.91 -2.91 -0.02 3.61 16 9 C 0.04 2.07 5.57 -21.27 -0.12 1.95 16 10 C -0.20 -9.64 9.74 22.47 0.22 -9.42 16 11 C -0.16 -6.82 9.82 22.15 0.22 -6.60 16 12 C 0.11 4.43 6.67 38.67 0.26 4.69 16 13 N -0.75 -22.40 5.69 -342.71 -1.95 -24.35 16 14 C 0.18 4.28 4.82 85.63 0.41 4.69 16 15 C -0.06 -1.16 5.29 -19.64 -0.10 -1.26 16 16 C -0.14 -2.29 9.75 22.41 0.22 -2.07 16 17 C 0.29 5.51 8.41 84.73 0.71 6.23 16 18 F -0.11 -2.20 17.29 44.97 0.78 -1.42 16 19 N -0.50 -9.88 10.37 -196.77 -2.04 -11.92 16 20 C 0.12 1.94 11.17 84.71 0.95 2.89 16 21 C 0.05 0.97 7.29 22.46 0.16 1.13 16 22 F -0.12 -2.82 16.80 44.97 0.76 -2.07 16 23 C -0.17 -7.56 9.23 22.15 0.20 -7.35 16 24 C -0.14 -7.57 8.64 22.48 0.19 -7.38 16 25 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 26 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 27 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.40 10.58 8.46 -92.70 -0.78 9.80 16 29 H 0.06 1.67 7.80 -2.39 -0.02 1.65 16 30 H 0.08 1.86 7.82 -2.38 -0.02 1.84 16 31 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.11 4.28 6.68 -2.91 -0.02 4.26 16 34 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 Total: -1.00 -62.03 307.94 4.16 -57.88 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.38 Total: 23.40 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 3.97 Total: -38.23 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.75 Total: -81.22 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 1.53 Total: -3.49 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -62.03 4.16 -57.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809424140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.389 kcal (2) G-P(sol) polarization free energy of solvation -62.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds