Wall clock time and date at job start Tue Mar 31 2020 08:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00450 * 2 1 4 4 H 1.48497 * 109.46800 * 240.00020 * 3 2 1 5 5 H 1.48500 * 109.46764 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47144 * 119.99755 * 3 2 1 7 7 C 1.37880 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00043 * 173.75301 * 7 2 1 9 9 C 1.50699 * 120.00105 * 353.75728 * 7 2 1 10 10 O 1.45210 * 112.84731 * 62.60868 * 9 7 2 11 11 C 1.34229 * 116.99990 * 65.19037 * 10 9 7 12 12 O 1.20827 * 120.00172 * 357.70094 * 11 10 9 13 13 C 1.50696 * 119.99645 * 177.70485 * 11 10 9 14 14 H 1.08999 * 112.83238 * 50.33225 * 13 11 10 15 15 C 1.53525 * 113.58478 * 181.44304 * 13 11 10 16 16 C 1.51620 * 87.24865 * 114.59158 * 15 13 11 17 17 C 1.38389 * 147.48622 * 179.97438 * 16 15 13 18 18 C 1.38054 * 120.35277 * 180.02562 * 17 16 15 19 19 C 1.38462 * 119.93568 * 0.02562 * 18 17 16 20 20 F 1.35102 * 120.05390 * 179.97438 * 19 18 17 21 21 C 1.38321 * 119.89782 * 359.97438 * 19 18 17 22 22 C 1.38207 * 120.38630 * 0.05356 * 21 19 18 23 23 C 1.53775 * 113.61711 * 193.80159 * 9 7 2 24 24 C 1.53950 * 87.01788 * 89.23128 * 23 9 7 25 25 C 1.53777 * 87.11280 * 25.36672 * 24 23 9 26 26 H 0.96999 * 119.99560 * 5.01996 * 1 2 3 27 27 H 1.08998 * 113.58407 * 229.18585 * 15 13 11 28 28 H 1.08994 * 113.58512 * 359.97438 * 15 13 11 29 29 H 1.07995 * 119.82676 * 0.03170 * 17 16 15 30 30 H 1.08007 * 120.03001 * 180.02562 * 18 17 16 31 31 H 1.08002 * 119.84793 * 180.02562 * 21 19 18 32 32 H 1.08998 * 113.61927 * 203.75427 * 23 9 7 33 33 H 1.09004 * 113.61575 * 334.65217 * 23 9 7 34 34 H 1.09002 * 113.53911 * 270.80775 * 24 23 9 35 35 H 1.09005 * 113.66703 * 139.93447 * 24 23 9 36 36 H 1.09002 * 113.61456 * 220.09353 * 25 24 23 37 37 H 1.08991 * 113.61752 * 89.18472 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1970 -0.1012 9 6 1.2576 -2.4952 0.1430 10 8 0.3348 -2.7384 -0.9514 11 6 0.8682 -2.9165 -2.1702 12 8 2.0633 -2.8295 -2.3252 13 6 -0.0236 -3.2248 -3.3452 14 1 -0.8607 -2.5324 -3.4340 15 6 0.7422 -3.4344 -4.6592 16 6 0.2648 -4.8731 -4.6228 17 6 0.2573 -6.1159 -5.2315 18 6 -0.4346 -7.1668 -4.6634 19 6 -1.1260 -6.9787 -3.4786 20 9 -1.8044 -8.0054 -2.9208 21 6 -1.1211 -5.7381 -2.8669 22 6 -0.4304 -4.6828 -3.4319 23 6 2.1654 -3.6950 0.4613 24 6 1.9586 -3.3543 1.9483 25 6 0.6317 -2.6973 1.5331 26 1 -0.4849 0.8369 -0.0735 27 1 0.3393 -2.8622 -5.4948 28 1 1.8222 -3.3301 -4.5559 29 1 0.7957 -6.2645 -6.1558 30 1 -0.4366 -8.1346 -5.1427 31 1 -1.6603 -5.5925 -1.9425 32 1 1.7390 -4.6547 0.1698 33 1 3.1933 -3.5669 0.1219 34 1 2.6917 -2.6488 2.3394 35 1 1.8317 -4.2304 2.5844 36 1 0.4231 -1.7649 2.0577 37 1 -0.2149 -3.3838 1.5351 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:06 Heat of formation + Delta-G solvation = -44.859432 kcal Electronic energy + Delta-G solvation = -23084.134402 eV Core-core repulsion = 19515.165701 eV Total energy + Delta-G solvation = -3568.968700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.87884 -40.65913 -38.99338 -37.09162 -34.86325 -34.14500 -32.32609 -30.85890 -27.61561 -26.29315 -25.24381 -24.57185 -23.13310 -22.24210 -21.00856 -19.35496 -18.58124 -17.44034 -17.05071 -16.49474 -16.03236 -15.50443 -15.22135 -15.10607 -14.86128 -14.53197 -14.03135 -13.75284 -13.56885 -13.50818 -12.75644 -12.62478 -12.04134 -11.81398 -11.65837 -11.53718 -11.25105 -11.05842 -11.03390 -10.91633 -10.62186 -10.41486 -10.31599 -9.92899 -9.84524 -9.53010 -8.95737 -8.82249 -8.60209 -8.55531 -8.37971 -6.14209 -4.26500 1.07919 1.21426 3.22459 3.25921 3.30102 3.34348 3.51173 3.92250 4.06884 4.26274 4.32583 4.49926 4.66308 4.93012 5.14580 5.29411 5.46071 5.55521 5.64583 5.68962 5.75473 5.80794 5.88882 5.96132 6.07089 6.12418 6.16884 6.23740 6.41749 6.49585 6.62355 6.67090 6.87311 6.89408 7.08674 7.26434 7.51629 7.75231 7.89976 8.30752 8.77270 9.15322 9.43733 10.90127 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.004994 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.734808 B = 5605.552068 C = 6293.295964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.076 3.924 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.241 3.759 10 O -0.338 6.338 11 C 0.480 3.520 12 O -0.504 6.504 13 C -0.045 4.045 14 H 0.128 0.872 15 C -0.056 4.056 16 C -0.129 4.129 17 C -0.072 4.072 18 C -0.150 4.150 19 C 0.094 3.906 20 F -0.140 7.140 21 C -0.119 4.119 22 C -0.083 4.083 23 C -0.159 4.159 24 C -0.132 4.132 25 C -0.108 4.108 26 H 0.264 0.736 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.129 0.871 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 -9.616 -7.813 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.130 4.130 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.254 6.254 11 C 0.321 3.679 12 O -0.393 6.393 13 C -0.064 4.064 14 H 0.146 0.854 15 C -0.093 4.093 16 C -0.129 4.129 17 C -0.090 4.090 18 C -0.169 4.169 19 C 0.075 3.925 20 F -0.118 7.118 21 C -0.138 4.138 22 C -0.083 4.083 23 C -0.197 4.197 24 C -0.169 4.169 25 C -0.146 4.146 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.262 -9.514 -7.692 12.442 hybrid contribution 0.207 0.699 0.109 0.737 sum -2.055 -8.815 -7.583 11.808 Atomic orbital electron populations 1.70028 1.05859 1.27224 1.46665 1.25078 0.94877 0.99330 0.93726 0.86628 0.79766 0.82546 0.79028 1.19992 1.21099 1.19831 1.20912 0.93621 0.88712 1.51937 0.91414 1.21214 0.85221 0.92233 0.80606 1.86494 1.44139 1.78648 1.16095 1.22094 0.87161 0.73983 0.84685 1.90552 1.16420 1.46918 1.85438 1.21318 0.98803 0.92845 0.93463 0.85396 1.21867 1.02903 0.89064 0.95423 1.22448 0.98384 0.95698 0.96366 1.20060 0.98674 0.90331 0.99904 1.20938 0.99991 1.00300 0.95635 1.17302 0.96622 0.84537 0.94025 1.91493 1.77990 1.57327 1.85022 1.20234 1.01624 0.90461 1.01476 1.21655 0.96188 0.94730 0.95777 1.23549 1.01234 0.98502 0.96374 1.22572 0.99235 0.99436 0.95700 1.22902 0.95083 0.99902 0.96694 0.92628 0.88209 0.86847 0.85277 0.84491 0.84625 0.92339 0.91816 0.90187 0.92967 0.90696 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.81 12.78 55.43 0.71 -23.10 16 2 C 0.08 2.05 5.29 -17.82 -0.09 1.96 16 3 Si 0.89 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -14.02 7.08 -34.44 -0.24 -14.27 16 8 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 9 C 0.24 6.03 0.47 -90.96 -0.04 5.99 16 10 O -0.34 -8.45 9.76 -39.25 -0.38 -8.83 16 11 C 0.48 10.85 7.05 36.00 0.25 11.11 16 12 O -0.50 -12.47 14.15 -18.75 -0.27 -12.73 16 13 C -0.05 -0.78 4.44 -92.22 -0.41 -1.19 16 14 H 0.13 2.03 8.14 -51.93 -0.42 1.61 16 15 C -0.06 -0.79 7.77 -27.17 -0.21 -1.01 16 16 C -0.13 -1.81 7.49 -103.77 -0.78 -2.59 16 17 C -0.07 -0.85 10.02 -39.59 -0.40 -1.25 16 18 C -0.15 -1.77 10.02 -39.57 -0.40 -2.17 16 19 C 0.09 1.30 7.30 -39.47 -0.29 1.01 16 20 F -0.14 -1.93 17.27 2.25 0.04 -1.90 16 21 C -0.12 -1.81 10.00 -39.56 -0.40 -2.20 16 22 C -0.08 -1.33 6.99 -103.83 -0.73 -2.05 16 23 C -0.16 -3.54 6.56 -25.83 -0.17 -3.71 16 24 C -0.13 -2.67 7.81 -25.83 -0.20 -2.87 16 25 C -0.11 -2.47 7.28 -25.92 -0.19 -2.66 16 26 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.11 1.75 7.05 -51.93 -0.37 1.38 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.46 8.09 -51.93 -0.42 1.04 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.82 7.97 -51.93 -0.41 1.41 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -30.26 322.66 -8.90 -39.15 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.55 Total: 2.56 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -4.29 Total: -15.89 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.71 Total: -23.10 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.65 Total: -21.57 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.26 -8.90 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.705 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds