Wall clock time and date at job start Tue Mar 31 2020 08:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00450 * 2 1 4 4 H 1.48497 * 109.46800 * 240.00020 * 3 2 1 5 5 H 1.48500 * 109.46764 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47144 * 119.99755 * 3 2 1 7 7 C 1.37880 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00043 * 173.75301 * 7 2 1 9 9 C 1.50699 * 120.00105 * 353.75728 * 7 2 1 10 10 O 1.45210 * 112.84731 * 62.60868 * 9 7 2 11 11 C 1.34229 * 116.99990 * 65.19037 * 10 9 7 12 12 O 1.20827 * 120.00172 * 357.70094 * 11 10 9 13 13 C 1.50696 * 119.99645 * 177.70485 * 11 10 9 14 14 H 1.08999 * 112.83238 * 50.33225 * 13 11 10 15 15 C 1.53525 * 113.58478 * 181.44304 * 13 11 10 16 16 C 1.51620 * 87.24865 * 114.59158 * 15 13 11 17 17 C 1.38389 * 147.48622 * 179.97438 * 16 15 13 18 18 C 1.38054 * 120.35277 * 180.02562 * 17 16 15 19 19 C 1.38462 * 119.93568 * 0.02562 * 18 17 16 20 20 F 1.35102 * 120.05390 * 179.97438 * 19 18 17 21 21 C 1.38321 * 119.89782 * 359.97438 * 19 18 17 22 22 C 1.38207 * 120.38630 * 0.05356 * 21 19 18 23 23 C 1.53775 * 113.61711 * 193.80159 * 9 7 2 24 24 C 1.53950 * 87.01788 * 89.23128 * 23 9 7 25 25 C 1.53777 * 87.11280 * 25.36672 * 24 23 9 26 26 H 0.96999 * 119.99560 * 5.01996 * 1 2 3 27 27 H 1.08998 * 113.58407 * 229.18585 * 15 13 11 28 28 H 1.08994 * 113.58512 * 359.97438 * 15 13 11 29 29 H 1.07995 * 119.82676 * 0.03170 * 17 16 15 30 30 H 1.08007 * 120.03001 * 180.02562 * 18 17 16 31 31 H 1.08002 * 119.84793 * 180.02562 * 21 19 18 32 32 H 1.08998 * 113.61927 * 203.75427 * 23 9 7 33 33 H 1.09004 * 113.61575 * 334.65217 * 23 9 7 34 34 H 1.09002 * 113.53911 * 270.80775 * 24 23 9 35 35 H 1.09005 * 113.66703 * 139.93447 * 24 23 9 36 36 H 1.09002 * 113.61456 * 220.09353 * 25 24 23 37 37 H 1.08991 * 113.61752 * 89.18472 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1970 -0.1012 9 6 1.2576 -2.4952 0.1430 10 8 0.3348 -2.7384 -0.9514 11 6 0.8682 -2.9165 -2.1702 12 8 2.0633 -2.8295 -2.3252 13 6 -0.0236 -3.2248 -3.3452 14 1 -0.8607 -2.5324 -3.4340 15 6 0.7422 -3.4344 -4.6592 16 6 0.2648 -4.8731 -4.6228 17 6 0.2573 -6.1159 -5.2315 18 6 -0.4346 -7.1668 -4.6634 19 6 -1.1260 -6.9787 -3.4786 20 9 -1.8044 -8.0054 -2.9208 21 6 -1.1211 -5.7381 -2.8669 22 6 -0.4304 -4.6828 -3.4319 23 6 2.1654 -3.6950 0.4613 24 6 1.9586 -3.3543 1.9483 25 6 0.6317 -2.6973 1.5331 26 1 -0.4849 0.8369 -0.0735 27 1 0.3393 -2.8622 -5.4948 28 1 1.8222 -3.3301 -4.5559 29 1 0.7957 -6.2645 -6.1558 30 1 -0.4366 -8.1346 -5.1427 31 1 -1.6603 -5.5925 -1.9425 32 1 1.7390 -4.6547 0.1698 33 1 3.1933 -3.5669 0.1219 34 1 2.6917 -2.6488 2.3394 35 1 1.8317 -4.2304 2.5844 36 1 0.4231 -1.7649 2.0577 37 1 -0.2149 -3.3838 1.5351 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810858679.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:05 Heat of formation + Delta-G solvation = -59.175447 kcal Electronic energy + Delta-G solvation = -23084.755191 eV Core-core repulsion = 19515.165701 eV Total energy + Delta-G solvation = -3569.589489 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.94328 -41.97322 -40.65098 -38.80579 -36.22813 -35.83651 -34.38551 -31.91264 -28.89772 -28.14486 -26.64669 -26.37716 -24.74886 -23.52859 -22.23076 -20.81068 -20.48216 -19.02603 -18.39325 -17.75652 -17.51567 -17.08366 -16.79941 -16.60587 -16.20597 -16.16298 -15.70329 -15.19489 -14.96224 -14.60994 -14.30888 -13.97787 -13.55222 -13.52424 -13.04712 -12.94363 -12.84895 -12.80608 -12.73497 -12.34498 -12.23527 -12.12612 -11.83976 -11.70102 -11.66353 -11.21063 -10.80782 -10.57591 -10.45818 -10.02043 -9.50517 -8.19570 -6.38336 0.00938 0.15605 1.38185 1.38273 1.46811 1.57394 2.22919 2.36576 2.55834 2.84194 3.09864 3.18151 3.38069 3.51224 3.91636 3.95383 3.97578 4.11838 4.20026 4.32627 4.33978 4.49740 4.58146 4.62272 4.79212 4.80126 4.88095 4.93707 5.03108 5.06655 5.10800 5.16283 5.33477 5.38790 5.57809 5.62509 5.72631 5.83841 6.00050 6.40812 6.66660 7.26768 7.40092 8.84294 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.004994 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.734808 B = 5605.552068 C = 6293.295964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.035 3.965 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.217 3.783 10 O -0.356 6.356 11 C 0.470 3.530 12 O -0.534 6.534 13 C -0.052 4.052 14 H 0.135 0.865 15 C -0.044 4.044 16 C -0.126 4.126 17 C -0.064 4.064 18 C -0.134 4.134 19 C 0.083 3.917 20 F -0.142 7.142 21 C -0.135 4.135 22 C -0.114 4.114 23 C -0.153 4.153 24 C -0.112 4.112 25 C -0.108 4.108 26 H 0.266 0.734 27 H 0.134 0.866 28 H 0.099 0.901 29 H 0.168 0.832 30 H 0.173 0.827 31 H 0.127 0.873 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 -10.886 -9.233 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.169 4.169 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.068 0.932 9 C 0.183 3.817 10 O -0.272 6.272 11 C 0.313 3.687 12 O -0.425 6.425 13 C -0.071 4.071 14 H 0.153 0.847 15 C -0.081 4.081 16 C -0.126 4.126 17 C -0.081 4.081 18 C -0.152 4.152 19 C 0.064 3.936 20 F -0.121 7.121 21 C -0.154 4.154 22 C -0.114 4.114 23 C -0.190 4.190 24 C -0.149 4.149 25 C -0.146 4.146 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.117 0.883 29 H 0.186 0.814 30 H 0.190 0.810 31 H 0.145 0.855 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.079 -10.790 -9.108 14.273 hybrid contribution 0.130 1.014 0.511 1.142 sum -1.950 -9.777 -8.597 13.164 Atomic orbital electron populations 1.70115 1.06871 1.27922 1.47370 1.25724 0.95657 1.02111 0.93365 0.85743 0.78716 0.79120 0.78922 1.20429 1.20132 1.18984 1.21016 0.92954 0.90364 1.52496 0.93237 1.21424 0.86259 0.92526 0.81501 1.86471 1.44467 1.78964 1.17292 1.23093 0.87706 0.72750 0.85125 1.90513 1.17915 1.48205 1.85845 1.21430 0.98725 0.94429 0.92530 0.84741 1.21839 1.01712 0.89931 0.94593 1.22524 0.97845 0.96431 0.95776 1.20478 0.97920 0.88920 1.00796 1.21367 0.97844 1.01770 0.94226 1.17458 0.97277 0.83937 0.94898 1.91487 1.78153 1.57191 1.85241 1.20307 1.02103 0.91286 1.01657 1.21558 0.98354 0.93998 0.97500 1.23462 0.99820 0.97832 0.97927 1.22499 0.97187 1.00371 0.94839 1.22879 0.96748 0.99420 0.95543 0.92526 0.84766 0.88283 0.81432 0.80951 0.85514 0.91590 0.93182 0.90338 0.89200 0.92839 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.00 12.78 21.45 0.27 -49.72 16 2 C 0.04 1.92 5.29 84.66 0.45 2.37 16 3 Si 0.95 43.46 29.55 68.60 2.03 45.48 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.53 -29.75 7.08 25.60 0.18 -29.57 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.22 11.13 0.47 -11.02 -0.01 11.12 16 10 O -0.36 -18.39 9.76 -51.40 -0.50 -18.90 16 11 C 0.47 21.92 7.05 71.23 0.50 22.42 16 12 O -0.53 -27.29 14.15 21.96 0.31 -26.98 16 13 C -0.05 -1.82 4.44 -11.83 -0.05 -1.88 16 14 H 0.13 4.36 8.14 -2.39 -0.02 4.35 16 15 C -0.04 -1.21 7.77 30.31 0.24 -0.97 16 16 C -0.13 -3.28 7.49 -19.31 -0.14 -3.43 16 17 C -0.06 -1.26 10.02 22.26 0.22 -1.04 16 18 C -0.13 -2.67 10.02 22.28 0.22 -2.44 16 19 C 0.08 2.16 7.30 22.34 0.16 2.33 16 20 F -0.14 -3.73 17.27 44.97 0.78 -2.95 16 21 C -0.13 -4.07 10.00 22.28 0.22 -3.85 16 22 C -0.11 -3.60 6.99 -19.35 -0.14 -3.73 16 23 C -0.15 -6.87 6.56 31.18 0.20 -6.66 16 24 C -0.11 -4.42 7.81 31.18 0.24 -4.18 16 25 C -0.11 -4.99 7.28 31.12 0.23 -4.76 16 26 H 0.27 14.21 8.32 -92.71 -0.77 13.44 16 27 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.10 3.01 7.05 -2.39 -0.02 2.99 16 29 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 30 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.05 2.34 8.09 -2.39 -0.02 2.32 16 34 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.09 2.88 8.14 -2.38 -0.02 2.87 16 36 H 0.05 2.66 7.97 -2.39 -0.02 2.64 16 37 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -67.33 322.66 6.51 -60.83 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.08 Total: 16.51 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 2.54 Total: -24.27 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.27 Total: -49.72 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.19 Total: -45.88 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.33 6.51 -60.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858679.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.651 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds