Wall clock time and date at job start Tue Mar 31 2020 06:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.20830 * 120.00271 * 359.97438 * 11 10 9 13 13 O 1.34234 * 119.99881 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99947 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47352 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.38077 * 55.20528 * 15 14 13 17 17 C 1.52593 * 109.38264 * 295.52560 * 15 14 13 18 18 C 1.52582 * 110.64244 * 169.85504 * 17 15 14 19 19 C 1.53030 * 109.98823 * 69.98338 * 18 17 15 20 20 S 1.81668 * 109.00056 * 296.35371 * 19 18 17 21 21 O 1.42106 * 108.66224 * 299.96568 * 20 19 18 22 22 O 1.42097 * 108.66509 * 168.62855 * 20 19 18 23 23 C 1.53031 * 109.38892 * 175.00011 * 15 14 13 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 28 28 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 29 29 H 1.09004 * 109.47342 * 299.99800 * 14 13 11 30 30 H 1.09002 * 109.47375 * 60.00012 * 14 13 11 31 31 H 1.08999 * 109.23699 * 290.15238 * 17 15 14 32 32 H 1.08998 * 109.24243 * 49.55315 * 17 15 14 33 33 H 1.08997 * 109.38437 * 309.82560 * 18 17 15 34 34 H 1.09001 * 109.38451 * 190.14294 * 18 17 15 35 35 H 1.09006 * 109.55145 * 176.49193 * 19 18 17 36 36 H 1.09005 * 109.63267 * 56.25666 * 19 18 17 37 37 H 1.09000 * 109.54734 * 303.66295 * 23 15 14 38 38 H 1.09001 * 109.55136 * 63.94574 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2834 -4.9672 0.0010 13 8 2.1629 -6.1297 -0.0003 14 6 1.3721 -7.3474 -0.0002 15 6 2.3040 -8.5608 -0.0001 16 1 2.9897 -8.4902 0.8443 17 6 3.1045 -8.5847 -1.2990 18 6 4.2148 -9.6289 -1.2275 19 6 3.6123 -11.0354 -1.2483 20 16 2.5939 -11.2647 0.2385 21 8 3.4193 -11.1046 1.3842 22 8 1.8326 -12.4552 0.0891 23 6 1.4730 -9.8396 0.1258 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 2.8719 -3.6044 -0.8906 28 1 2.8719 -3.6044 0.8894 29 1 0.7435 -7.3724 0.8900 30 1 0.7429 -7.3721 -0.8900 31 1 2.4379 -8.8253 -2.1272 32 1 3.5455 -7.6023 -1.4673 33 1 4.7816 -9.4917 -0.3066 34 1 4.8808 -9.5078 -2.0818 35 1 4.4129 -11.7751 -1.2598 36 1 2.9925 -11.1552 -2.1369 37 1 0.8575 -9.7877 1.0239 38 1 0.8336 -9.9469 -0.7504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:24 Heat of formation + Delta-G solvation = -208.762238 kcal Electronic energy + Delta-G solvation = -20900.161083 eV Core-core repulsion = 17447.156185 eV Total energy + Delta-G solvation = -3453.004897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51039 -38.98461 -37.99734 -37.12497 -37.05260 -35.63861 -33.60220 -33.04909 -29.02467 -28.33380 -27.24509 -24.18737 -23.35645 -21.52957 -21.47105 -19.81538 -19.06690 -18.25489 -17.75643 -17.66590 -17.26563 -16.74000 -16.59670 -16.45773 -16.03737 -15.68608 -14.86827 -14.76440 -14.31068 -14.07844 -13.90575 -13.81199 -13.74078 -13.23287 -13.17596 -13.09651 -12.83049 -12.53789 -12.50281 -12.37727 -12.25510 -11.99056 -11.82087 -11.74100 -11.72280 -11.50640 -11.39638 -11.24496 -10.96232 -10.57340 -8.19780 -6.33329 -0.93787 1.25752 1.43917 1.46140 1.56289 1.59639 1.85564 2.43591 2.72336 2.97656 3.14320 3.45103 3.51752 3.66519 3.79950 3.93683 4.05180 4.10698 4.25266 4.33106 4.46652 4.47721 4.54061 4.60775 4.68164 4.78076 4.89649 4.97372 5.10884 5.27385 5.31216 5.42041 5.48903 5.56413 5.81429 6.13871 6.80639 6.87989 7.37102 8.92831 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.045767 B = 0.002604 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.650098 B =10748.527530 C =11027.063778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.255 1.255 6 H -0.287 1.287 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.037 3.963 10 C -0.095 4.095 11 C 0.466 3.534 12 O -0.546 6.546 13 O -0.351 6.351 14 C 0.063 3.937 15 C -0.073 4.073 16 H 0.101 0.899 17 C -0.143 4.143 18 C -0.111 4.111 19 C -0.582 4.582 20 S 2.425 3.575 21 O -0.978 6.978 22 O -0.983 6.983 23 C -0.599 4.599 24 H 0.263 0.737 25 H -0.012 1.012 26 H -0.010 1.010 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.143 0.857 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.798 -23.010 -4.806 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.178 1.178 6 H -0.212 1.212 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.000 4.000 10 C -0.132 4.132 11 C 0.311 3.689 12 O -0.436 6.436 13 O -0.268 6.268 14 C -0.012 4.012 15 C -0.092 4.092 16 H 0.119 0.881 17 C -0.180 4.180 18 C -0.149 4.149 19 C -0.715 4.715 20 S 2.612 3.388 21 O -0.976 6.976 22 O -0.980 6.980 23 C -0.728 4.728 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.009 0.991 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.318 -23.662 -4.129 25.764 hybrid contribution -0.671 1.420 -0.261 1.592 sum 8.647 -22.242 -4.390 24.264 Atomic orbital electron populations 1.70159 1.08236 1.27906 1.51322 1.26099 0.95716 1.03867 0.94568 0.85325 0.78724 0.77750 0.78485 1.19840 1.17847 1.21244 1.21658 0.94141 0.91299 1.51000 0.90372 1.18801 0.93731 0.92057 0.95397 1.21513 0.99296 0.86077 1.06340 1.24465 0.87101 0.86568 0.70726 1.90638 1.17602 1.88349 1.47005 1.86487 1.41603 1.14742 1.83975 1.23233 0.93727 0.81011 1.03180 1.20880 0.96448 0.89876 1.02036 0.88076 1.21868 0.98001 1.01828 0.96287 1.21324 0.98485 0.88994 1.06104 1.30087 1.15209 1.06750 1.19424 1.07579 0.77128 0.75946 0.78166 1.93547 1.67989 1.87006 1.49033 1.93554 1.71980 1.44807 1.87700 1.30290 1.15166 1.13271 1.14072 0.92786 0.99383 0.99121 0.86337 0.86701 0.91559 0.90351 0.88553 0.89240 0.89971 0.87204 0.83015 0.81979 0.83927 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 13.29 21.45 0.28 -57.36 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 9 C 0.04 1.98 4.26 29.85 0.13 2.11 16 10 C -0.10 -3.63 5.75 29.85 0.17 -3.46 16 11 C 0.47 17.18 7.96 71.23 0.57 17.75 16 12 O -0.55 -24.45 15.73 21.95 0.35 -24.10 16 13 O -0.35 -9.82 9.56 -51.46 -0.49 -10.31 16 14 C 0.06 1.37 4.83 71.98 0.35 1.72 16 15 C -0.07 -1.03 2.26 -10.92 -0.02 -1.06 16 16 H 0.10 1.51 8.01 -2.39 -0.02 1.49 16 17 C -0.14 -1.43 4.91 30.32 0.15 -1.28 16 18 C -0.11 -0.77 5.73 30.47 0.17 -0.60 16 19 C -0.58 -3.13 6.35 71.99 0.46 -2.67 16 20 S 2.42 31.61 5.31 -56.49 -0.30 31.31 16 21 O -0.98 -20.96 17.94 -127.40 -2.29 -23.25 16 22 O -0.98 -20.20 18.10 -127.40 -2.31 -22.51 16 23 C -0.60 -6.19 5.62 71.99 0.40 -5.79 16 24 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 25 H -0.01 -0.73 8.10 -2.38 -0.02 -0.75 16 26 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 27 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 28 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 29 H 0.07 1.53 8.13 -2.38 -0.02 1.51 16 30 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 31 H 0.10 0.59 8.09 -2.39 -0.02 0.57 16 32 H 0.09 1.12 7.52 -2.39 -0.02 1.10 16 33 H 0.08 0.70 8.01 -2.39 -0.02 0.68 16 34 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.15 0.42 8.14 -2.38 -0.02 0.40 16 36 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -82.96 330.17 1.38 -81.58 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 1.04 Total: 2.14 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 3.07 Total: -22.59 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.28 Total: -57.36 kcal Atomic # 8 Polarization: -75.42 SS G_CDS: -4.74 Total: -80.16 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 31.61 SS G_CDS: -0.30 Total: 31.31 kcal Total: -82.96 1.38 -81.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.182 kcal (2) G-P(sol) polarization free energy of solvation -82.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds