Wall clock time and date at job start Tue Mar 31 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00303 * 2 1 4 4 H 1.48495 * 109.47574 * 239.99704 * 3 2 1 5 5 H 1.48497 * 109.47163 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46998 * 119.99669 * 3 2 1 7 7 C 1.37877 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46592 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00303 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99603 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00001 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47091 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.38585 * 304.78956 * 15 14 13 17 17 C 1.52588 * 109.38147 * 64.47799 * 15 14 13 18 18 C 1.52593 * 110.64045 * 190.14415 * 17 15 14 19 19 C 1.53039 * 109.98492 * 290.01156 * 18 17 15 20 20 S 1.81668 * 108.99880 * 63.64662 * 19 18 17 21 21 O 1.42103 * 108.66468 * 191.37439 * 20 19 18 22 22 O 1.42101 * 108.66242 * 60.03281 * 20 19 18 23 23 C 1.53038 * 109.38410 * 184.99999 * 15 14 13 24 24 H 0.97007 * 119.99423 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46702 * 59.99702 * 9 7 2 26 26 H 1.08994 * 109.46891 * 300.00554 * 9 7 2 27 27 H 1.08998 * 109.46820 * 60.00578 * 10 9 7 28 28 H 1.08994 * 109.47315 * 299.99860 * 10 9 7 29 29 H 1.09001 * 109.47157 * 299.99890 * 14 13 11 30 30 H 1.09004 * 109.47122 * 60.00023 * 14 13 11 31 31 H 1.09005 * 109.24655 * 310.43945 * 17 15 14 32 32 H 1.08998 * 109.24414 * 69.84452 * 17 15 14 33 33 H 1.09003 * 109.38400 * 169.85605 * 18 17 15 34 34 H 1.09001 * 109.29937 * 50.11532 * 18 17 15 35 35 H 1.08999 * 109.54747 * 303.79494 * 19 18 17 36 36 H 1.08997 * 109.62991 * 183.55205 * 19 18 17 37 37 H 1.09005 * 109.54707 * 296.05172 * 23 15 14 38 38 H 1.08993 * 109.54816 * 56.34269 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4916 -4.9672 -0.0033 12 8 0.2833 -4.9671 -0.0033 13 8 2.1627 -6.1296 -0.0037 14 6 1.3718 -7.3474 -0.0048 15 6 2.3038 -8.5608 -0.0057 16 1 2.9894 -8.4897 -0.8500 17 6 3.1040 -8.5857 1.2932 18 6 4.2144 -9.6298 1.2210 19 6 3.6118 -11.0365 1.2408 20 16 2.5936 -11.2646 -0.2463 21 8 1.8321 -12.4551 -0.0978 22 8 3.4191 -11.1036 -1.3917 23 6 1.4726 -9.8396 -0.1327 24 1 -0.4849 0.8402 -0.0004 25 1 0.6246 -2.5562 -0.8920 26 1 0.6239 -2.5574 0.8879 27 1 2.8717 -3.6052 0.8873 28 1 2.8718 -3.6036 -0.8926 29 1 0.7426 -7.3728 0.8849 30 1 0.7433 -7.3717 -0.8951 31 1 3.5451 -7.6034 1.4624 32 1 2.4374 -8.8269 2.1212 33 1 4.8803 -9.5095 2.0755 34 1 4.7797 -9.4913 0.2994 35 1 2.9916 -11.1551 2.1292 36 1 4.4114 -11.7772 1.2526 37 1 0.8332 -9.9474 0.7435 38 1 0.8574 -9.7869 -1.0308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:34 Heat of formation + Delta-G solvation = -182.261206 kcal Electronic energy + Delta-G solvation = -20899.005808 eV Core-core repulsion = 17447.150082 eV Total energy + Delta-G solvation = -3451.855726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -40.14324 -38.21618 -37.24159 -36.40030 -35.93039 -33.63029 -32.96957 -31.17838 -28.29936 -27.30550 -25.70958 -22.99753 -22.19219 -20.89291 -19.91334 -19.20680 -17.50764 -17.21368 -16.80002 -16.36210 -16.19563 -16.01647 -15.43341 -15.30084 -14.92536 -14.49841 -14.02472 -13.60870 -13.41767 -13.38124 -12.73588 -12.53092 -12.39856 -12.38639 -12.28472 -11.89450 -11.78892 -11.59216 -11.30037 -11.22822 -11.08008 -10.97162 -10.70220 -10.53607 -10.39826 -10.08810 -9.98993 -9.59744 -9.23163 -8.41018 -6.04976 -4.10193 -0.39639 2.21821 2.74874 2.93184 3.25562 3.30358 3.35315 3.37088 3.54702 4.01867 4.04760 4.22910 4.29527 4.40497 4.46439 4.60210 4.82431 4.97967 5.06063 5.14980 5.20490 5.29340 5.30460 5.47042 5.48189 5.58209 5.80323 5.80919 6.06376 6.13958 6.57299 6.86073 7.61912 7.68500 7.93910 8.19510 8.35048 8.96717 9.54095 11.05971 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.045767 B = 0.002604 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.642591 B =10748.655145 C =11027.017606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.457 3.543 12 O -0.505 6.505 13 O -0.365 6.365 14 C 0.073 3.927 15 C -0.076 4.076 16 H 0.105 0.895 17 C -0.140 4.140 18 C -0.110 4.110 19 C -0.603 4.603 20 S 2.421 3.579 21 O -0.944 6.944 22 O -0.934 6.934 23 C -0.603 4.603 24 H 0.263 0.737 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.565 -22.584 3.446 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.141 4.141 11 C 0.301 3.699 12 O -0.391 6.391 13 O -0.283 6.283 14 C -0.002 4.002 15 C -0.095 4.095 16 H 0.123 0.877 17 C -0.177 4.177 18 C -0.148 4.148 19 C -0.733 4.733 20 S 2.603 3.397 21 O -0.941 6.941 22 O -0.931 6.931 23 C -0.732 4.732 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.051 -23.184 2.796 24.394 hybrid contribution 0.041 1.351 0.653 1.502 sum 7.092 -21.833 3.450 23.214 Atomic orbital electron populations 1.69984 1.06113 1.26922 1.49764 1.25023 0.94863 0.99360 0.95070 0.86593 0.79507 0.82846 0.78654 1.20134 1.21248 1.20161 1.21113 0.93039 0.90638 1.52037 0.92336 1.19015 0.93224 0.89294 0.98877 1.21775 1.00684 0.87563 1.04046 1.24801 0.87960 0.85587 0.71600 1.90644 1.15929 1.87639 1.44917 1.86530 1.41998 1.14843 1.84950 1.22850 0.92854 0.81467 1.03049 1.20868 0.96797 0.90992 1.00864 0.87699 1.21816 0.97419 1.01708 0.96746 1.21293 0.98749 0.89327 1.05406 1.30243 1.15225 1.06568 1.21240 1.07949 0.77445 0.76585 0.77717 1.93605 1.70812 1.42721 1.86933 1.93605 1.67077 1.86520 1.45900 1.30339 1.15178 1.15213 1.12442 0.92757 0.95611 0.95620 0.88927 0.88861 0.90985 0.90960 0.88238 0.90590 0.89189 0.89449 0.84854 0.84784 0.84418 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 10 C -0.10 -2.01 5.75 -27.88 -0.16 -2.17 16 11 C 0.46 8.48 7.96 36.01 0.29 8.76 16 12 O -0.51 -11.03 15.73 -18.75 -0.29 -11.32 16 13 O -0.36 -5.33 9.56 -39.25 -0.38 -5.70 16 14 C 0.07 0.84 4.83 37.16 0.18 1.02 16 15 C -0.08 -0.60 2.26 -90.81 -0.21 -0.81 16 16 H 0.10 0.84 8.00 -51.93 -0.42 0.42 16 17 C -0.14 -0.90 4.91 -27.15 -0.13 -1.04 16 18 C -0.11 -0.56 5.73 -26.92 -0.15 -0.72 16 19 C -0.60 -2.65 6.35 37.18 0.24 -2.41 16 20 S 2.42 17.23 5.31 -107.50 -0.57 16.66 16 21 O -0.94 -10.00 18.10 -57.81 -1.05 -11.05 16 22 O -0.93 -10.05 17.93 -57.81 -1.04 -11.08 16 23 C -0.60 -3.63 5.62 37.18 0.21 -3.42 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 28 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.10 0.75 7.52 -51.93 -0.39 0.36 16 32 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.47 8.00 -51.93 -0.42 0.06 16 35 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.14 0.54 8.14 -51.92 -0.42 0.11 16 38 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -37.08 330.16 -8.73 -45.81 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -5.83 Total: -5.10 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.27 Total: -13.35 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -2.75 Total: -39.16 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 17.23 SS G_CDS: -0.57 Total: 16.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -37.08 -8.73 -45.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.449 kcal (2) G-P(sol) polarization free energy of solvation -37.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds