Wall clock time and date at job start Tue Mar 31 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00303 * 2 1 4 4 H 1.48495 * 109.47574 * 239.99704 * 3 2 1 5 5 H 1.48497 * 109.47163 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46998 * 119.99669 * 3 2 1 7 7 C 1.37877 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46592 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00303 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99603 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00001 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47091 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.38585 * 304.78956 * 15 14 13 17 17 C 1.52588 * 109.38147 * 64.47799 * 15 14 13 18 18 C 1.52593 * 110.64045 * 190.14415 * 17 15 14 19 19 C 1.53039 * 109.98492 * 290.01156 * 18 17 15 20 20 S 1.81668 * 108.99880 * 63.64662 * 19 18 17 21 21 O 1.42103 * 108.66468 * 191.37439 * 20 19 18 22 22 O 1.42101 * 108.66242 * 60.03281 * 20 19 18 23 23 C 1.53038 * 109.38410 * 184.99999 * 15 14 13 24 24 H 0.97007 * 119.99423 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46702 * 59.99702 * 9 7 2 26 26 H 1.08994 * 109.46891 * 300.00554 * 9 7 2 27 27 H 1.08998 * 109.46820 * 60.00578 * 10 9 7 28 28 H 1.08994 * 109.47315 * 299.99860 * 10 9 7 29 29 H 1.09001 * 109.47157 * 299.99890 * 14 13 11 30 30 H 1.09004 * 109.47122 * 60.00023 * 14 13 11 31 31 H 1.09005 * 109.24655 * 310.43945 * 17 15 14 32 32 H 1.08998 * 109.24414 * 69.84452 * 17 15 14 33 33 H 1.09003 * 109.38400 * 169.85605 * 18 17 15 34 34 H 1.09001 * 109.29937 * 50.11532 * 18 17 15 35 35 H 1.08999 * 109.54747 * 303.79494 * 19 18 17 36 36 H 1.08997 * 109.62991 * 183.55205 * 19 18 17 37 37 H 1.09005 * 109.54707 * 296.05172 * 23 15 14 38 38 H 1.08993 * 109.54816 * 56.34269 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4916 -4.9672 -0.0033 12 8 0.2833 -4.9671 -0.0033 13 8 2.1627 -6.1296 -0.0037 14 6 1.3718 -7.3474 -0.0048 15 6 2.3038 -8.5608 -0.0057 16 1 2.9894 -8.4897 -0.8500 17 6 3.1040 -8.5857 1.2932 18 6 4.2144 -9.6298 1.2210 19 6 3.6118 -11.0365 1.2408 20 16 2.5936 -11.2646 -0.2463 21 8 1.8321 -12.4551 -0.0978 22 8 3.4191 -11.1036 -1.3917 23 6 1.4726 -9.8396 -0.1327 24 1 -0.4849 0.8402 -0.0004 25 1 0.6246 -2.5562 -0.8920 26 1 0.6239 -2.5574 0.8879 27 1 2.8717 -3.6052 0.8873 28 1 2.8718 -3.6036 -0.8926 29 1 0.7426 -7.3728 0.8849 30 1 0.7433 -7.3717 -0.8951 31 1 3.5451 -7.6034 1.4624 32 1 2.4374 -8.8269 2.1212 33 1 4.8803 -9.5095 2.0755 34 1 4.7797 -9.4913 0.2994 35 1 2.9916 -11.1551 2.1292 36 1 4.4114 -11.7772 1.2526 37 1 0.8332 -9.9474 0.7435 38 1 0.8574 -9.7869 -1.0308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:28 Heat of formation + Delta-G solvation = -208.674915 kcal Electronic energy + Delta-G solvation = -20900.151192 eV Core-core repulsion = 17447.150082 eV Total energy + Delta-G solvation = -3453.001111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51130 -38.98515 -37.99768 -37.12555 -37.05272 -35.63819 -33.60181 -33.04884 -29.02451 -28.33326 -27.24441 -24.18655 -23.35586 -21.52987 -21.47145 -19.81600 -19.06597 -18.25365 -17.75588 -17.66639 -17.26598 -16.74007 -16.59670 -16.46134 -16.03793 -15.68605 -14.86853 -14.76278 -14.30517 -14.07969 -13.90531 -13.81184 -13.74126 -13.23342 -13.17918 -13.09682 -12.79176 -12.54106 -12.53677 -12.37775 -12.25534 -11.98060 -11.82057 -11.74520 -11.72398 -11.50689 -11.40325 -11.25564 -10.96326 -10.56371 -8.19568 -6.33283 -0.93826 1.25757 1.43843 1.47954 1.55055 1.59294 1.85528 2.43728 2.72297 2.97576 3.14389 3.45029 3.51687 3.66484 3.79848 3.93726 4.05136 4.10682 4.25253 4.33166 4.46636 4.47711 4.54028 4.60708 4.68119 4.78031 4.89622 4.97363 5.10844 5.27310 5.31110 5.41984 5.48743 5.56458 5.81386 6.13867 6.80538 6.87910 7.37154 8.92821 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.045767 B = 0.002604 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.642591 B =10748.655145 C =11027.017606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.038 3.962 10 C -0.095 4.095 11 C 0.466 3.534 12 O -0.546 6.546 13 O -0.351 6.351 14 C 0.063 3.937 15 C -0.073 4.073 16 H 0.101 0.899 17 C -0.143 4.143 18 C -0.111 4.111 19 C -0.582 4.582 20 S 2.424 3.576 21 O -0.983 6.983 22 O -0.978 6.978 23 C -0.599 4.599 24 H 0.264 0.736 25 H -0.012 1.012 26 H -0.010 1.010 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.787 -22.996 4.779 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.000 4.000 10 C -0.132 4.132 11 C 0.311 3.689 12 O -0.436 6.436 13 O -0.268 6.268 14 C -0.012 4.012 15 C -0.092 4.092 16 H 0.119 0.881 17 C -0.180 4.180 18 C -0.149 4.149 19 C -0.715 4.715 20 S 2.612 3.388 21 O -0.980 6.980 22 O -0.976 6.976 23 C -0.728 4.728 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.009 0.991 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.180 0.820 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.303 -23.646 4.097 25.738 hybrid contribution -0.658 1.414 0.275 1.584 sum 8.644 -22.232 4.372 24.251 Atomic orbital electron populations 1.70155 1.08237 1.27975 1.51243 1.26097 0.95715 1.03865 0.94543 0.85378 0.78055 0.77356 0.79500 1.18790 1.21434 1.18628 1.21632 0.94142 0.91319 1.51146 0.90374 1.18796 0.93726 0.92045 0.95390 1.21513 0.99295 0.86078 1.06337 1.24465 0.87103 0.86568 0.70728 1.90637 1.17603 1.88348 1.47004 1.86487 1.41605 1.14742 1.83973 1.23234 0.93726 0.81010 1.03180 1.20880 0.96449 0.89878 1.02031 0.88074 1.21872 0.98007 1.01831 0.96286 1.21331 0.98494 0.88987 1.06088 1.30086 1.15215 1.06745 1.19424 1.07581 0.77129 0.75947 0.78169 1.93555 1.71974 1.44803 1.87707 1.93546 1.67984 1.86999 1.49043 1.30292 1.15167 1.13271 1.14069 0.92779 0.99385 0.99133 0.86341 0.86699 0.90351 0.91556 0.89239 0.88555 0.87192 0.89976 0.81985 0.83006 0.81782 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.04 2.00 4.26 29.85 0.13 2.12 16 10 C -0.10 -3.63 5.75 29.85 0.17 -3.46 16 11 C 0.47 17.19 7.96 71.24 0.57 17.76 16 12 O -0.55 -24.45 15.73 21.96 0.35 -24.11 16 13 O -0.35 -9.82 9.56 -51.40 -0.49 -10.31 16 14 C 0.06 1.37 4.83 71.98 0.35 1.72 16 15 C -0.07 -1.03 2.26 -10.92 -0.02 -1.06 16 16 H 0.10 1.51 8.00 -2.39 -0.02 1.49 16 17 C -0.14 -1.43 4.91 30.32 0.15 -1.28 16 18 C -0.11 -0.77 5.73 30.47 0.17 -0.60 16 19 C -0.58 -3.13 6.35 72.00 0.46 -2.67 16 20 S 2.42 31.62 5.31 -56.49 -0.30 31.32 16 21 O -0.98 -20.21 18.10 -127.40 -2.31 -22.51 16 22 O -0.98 -20.96 17.93 -127.40 -2.28 -23.25 16 23 C -0.60 -6.19 5.62 71.99 0.40 -5.79 16 24 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 25 H -0.01 -0.73 8.10 -2.39 -0.02 -0.75 16 26 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 27 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 28 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 29 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 30 H 0.07 1.53 8.13 -2.38 -0.02 1.51 16 31 H 0.09 1.12 7.52 -2.38 -0.02 1.10 16 32 H 0.10 0.59 8.09 -2.39 -0.02 0.57 16 33 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.08 0.70 8.00 -2.39 -0.02 0.68 16 35 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -82.95 330.16 1.38 -81.56 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: 1.04 Total: 2.26 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 3.07 Total: -22.65 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.28 Total: -57.39 kcal Atomic # 8 Polarization: -75.44 SS G_CDS: -4.74 Total: -80.18 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 31.62 SS G_CDS: -0.30 Total: 31.32 kcal Total: -82.95 1.38 -81.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.110 kcal (2) G-P(sol) polarization free energy of solvation -82.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds