Wall clock time and date at job start Tue Mar 31 2020 08:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42097 * 108.58132 * 2 1 4 4 O 1.42104 * 108.57705 * 131.02737 * 2 1 3 5 5 C 1.81406 * 101.92197 * 245.51194 * 2 1 3 6 6 C 1.53005 * 109.47102 * 185.57605 * 5 2 1 7 7 C 1.52999 * 115.54829 * 295.75810 * 6 5 2 8 8 O 1.45192 * 109.47517 * 305.08643 * 7 6 5 9 9 C 1.34232 * 117.00178 * 180.02562 * 8 7 6 10 10 O 1.20822 * 119.99868 * 359.97438 * 9 8 7 11 11 C 1.50703 * 120.00047 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.46942 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46942 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99830 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00237 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99702 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00488 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46866 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47386 * 119.99652 * 17 15 13 20 20 H 1.48497 * 109.46787 * 240.00070 * 17 15 13 21 21 C 1.53000 * 117.49620 * 150.09094 * 6 5 2 22 22 C 1.52994 * 117.49653 * 81.43169 * 6 5 2 23 23 H 1.09006 * 109.46892 * 54.48912 * 1 2 3 24 24 H 1.08994 * 109.47365 * 174.48635 * 1 2 3 25 25 H 1.08998 * 109.47242 * 294.49265 * 1 2 3 26 26 H 1.08996 * 109.47172 * 305.57192 * 5 2 1 27 27 H 1.08997 * 109.46935 * 65.57857 * 5 2 1 28 28 H 1.09001 * 109.47151 * 65.08489 * 7 6 5 29 29 H 1.09005 * 109.47010 * 185.08074 * 7 6 5 30 30 H 1.09004 * 109.47144 * 299.99873 * 11 9 8 31 31 H 1.08997 * 109.47052 * 59.99824 * 11 9 8 32 32 H 1.08992 * 109.47402 * 299.99654 * 12 11 9 33 33 H 1.09004 * 109.47112 * 60.00436 * 12 11 9 34 34 H 0.97003 * 119.99464 * 180.02562 * 16 15 13 35 35 H 1.08995 * 117.49898 * 359.97438 * 21 6 5 36 36 H 1.09002 * 117.49373 * 145.01948 * 21 6 5 37 37 H 1.09011 * 117.49768 * 214.97523 * 22 6 5 38 38 H 1.08997 * 117.50688 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 1.0162 5 6 2.1887 -0.7357 -1.6153 6 6 3.6988 -0.9472 -1.7414 7 6 4.5461 0.3268 -1.7369 8 8 4.0771 1.2238 -2.7777 9 6 4.7197 2.3950 -2.9081 10 8 5.6433 2.6620 -2.1763 11 6 4.2892 3.3770 -3.9671 12 6 5.1785 4.6203 -3.9015 13 6 4.7484 5.6019 -4.9610 14 1 3.9230 5.3631 -5.6153 15 6 5.4085 6.8049 -5.0949 16 7 6.4133 7.0960 -4.2977 17 14 4.8750 8.0221 -6.4077 18 1 3.7290 7.4605 -7.1670 19 1 4.4661 9.2964 -5.7644 20 1 6.0060 8.2766 -7.3356 21 6 4.1789 -2.1119 -2.6096 22 6 4.2946 -2.1943 -1.0854 23 1 -0.3633 0.5970 -0.8366 24 1 -0.3634 -1.0228 -0.0987 25 1 -0.3633 0.4260 0.9352 26 1 1.6788 -1.6949 -1.7047 27 1 1.8480 -0.0679 -2.4065 28 1 4.4588 0.8178 -0.7676 29 1 5.5893 0.0699 -1.9214 30 1 4.3818 2.9150 -4.9501 31 1 3.2515 3.6635 -3.7966 32 1 5.0855 5.0821 -2.9186 33 1 6.2164 4.3340 -4.0718 34 1 6.8774 7.9425 -4.3917 35 1 3.4190 -2.7278 -3.0905 36 1 5.0987 -1.9707 -3.1772 37 1 5.2906 -2.1074 -0.6510 38 1 3.6110 -2.8640 -0.5637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:16 Heat of formation + Delta-G solvation = -139.454919 kcal Electronic energy + Delta-G solvation = -21322.125582 eV Core-core repulsion = 17872.126076 eV Total energy + Delta-G solvation = -3449.999506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = -0.19 seconds Orbital eigenvalues (eV) -40.02757 -38.42753 -37.13236 -36.15119 -35.75218 -33.53582 -31.13097 -30.28494 -29.43595 -27.66189 -25.63072 -22.83289 -22.11053 -20.06406 -19.71963 -18.96440 -17.30316 -16.91943 -16.81559 -16.30333 -16.06185 -15.92974 -15.55960 -14.86396 -14.48325 -14.42335 -13.63534 -13.57979 -13.52140 -13.23660 -12.65596 -12.41879 -12.23027 -12.13552 -12.10235 -11.87999 -11.78429 -11.48873 -11.21292 -11.11844 -10.95671 -10.78830 -10.59297 -10.43656 -10.01454 -9.88829 -9.82377 -9.49261 -9.12408 -8.34733 -5.98253 -4.02984 -0.27839 2.50218 2.88274 2.92807 3.32684 3.36702 3.39721 3.43131 3.54032 3.74910 4.10341 4.24237 4.39230 4.46450 4.47913 4.56290 4.64116 4.92026 5.22452 5.30009 5.31982 5.35512 5.37159 5.44855 5.56042 5.60217 5.79804 5.81800 6.17122 6.24026 6.69387 7.00261 7.70874 7.78986 8.02288 8.30659 8.47772 9.04436 9.60801 11.12874 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.003463 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.487687 B = 8084.098044 C = 8592.172967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.411 3.589 3 O -0.924 6.924 4 O -0.937 6.937 5 C -0.568 4.568 6 C -0.128 4.128 7 C 0.086 3.914 8 O -0.360 6.360 9 C 0.458 3.542 10 O -0.503 6.503 11 C -0.102 4.102 12 C 0.031 3.969 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.889 5.889 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.149 4.149 22 C -0.157 4.157 23 H 0.130 0.870 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.147 0.853 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.304 -21.589 5.769 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.593 3.407 3 O -0.922 6.922 4 O -0.935 6.935 5 C -0.696 4.696 6 C -0.130 4.130 7 C 0.012 3.988 8 O -0.278 6.278 9 C 0.301 3.699 10 O -0.389 6.389 11 C -0.140 4.140 12 C -0.006 4.006 13 C -0.565 4.565 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.527 5.527 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.187 4.187 22 C -0.194 4.194 23 H 0.149 0.851 24 H 0.144 0.856 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.165 0.835 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.331 -21.078 6.724 24.857 hybrid contribution -0.829 0.442 -1.211 1.533 sum -12.160 -20.636 5.513 24.579 Atomic orbital electron populations 1.30312 1.27248 1.11299 1.12008 1.08205 0.78275 0.76330 0.77867 1.93678 1.78351 1.33969 1.86156 1.93585 1.78907 1.67130 1.53831 1.29830 1.01909 1.13977 1.23862 1.20793 0.91057 0.90870 1.10238 1.22507 0.97238 0.87204 0.91876 1.86490 1.59286 1.29057 1.53013 1.24734 0.80101 0.80225 0.84799 1.90635 1.28487 1.76035 1.43754 1.21756 1.03404 0.94487 0.94310 1.19035 0.94438 0.88914 0.98194 1.21192 1.16682 1.01643 1.16998 0.92283 1.25025 0.94967 0.98181 0.96193 1.70014 1.21384 1.23485 1.37867 0.86489 0.78500 0.81133 0.81561 1.19686 1.20975 1.21009 1.23134 1.03439 0.98708 0.93425 1.23276 1.03334 0.96879 0.95920 0.85110 0.85574 0.85239 0.84990 0.83529 0.90088 0.90278 0.89063 0.88916 0.95426 0.95593 0.92925 0.87966 0.87739 0.87451 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.43 10.62 101.05 1.07 -2.35 16 2 S 2.41 22.67 5.08 -107.50 -0.55 22.12 16 3 O -0.92 -13.56 16.58 -57.83 -0.96 -14.52 16 4 O -0.94 -11.13 17.98 -57.83 -1.04 -12.17 16 5 C -0.57 -4.35 5.52 37.16 0.21 -4.15 16 6 C -0.13 -1.33 1.84 -154.51 -0.28 -1.61 16 7 C 0.09 1.26 4.86 37.16 0.18 1.44 16 8 O -0.36 -6.10 9.76 -39.26 -0.38 -6.48 16 9 C 0.46 9.51 7.96 36.01 0.29 9.80 16 10 O -0.50 -12.14 15.73 -18.75 -0.29 -12.44 16 11 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 12 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 13 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 14 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 17 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.15 -1.21 9.92 -26.69 -0.26 -1.48 16 22 C -0.16 -1.32 9.88 -26.70 -0.26 -1.58 16 23 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.13 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.15 1.04 7.86 -51.93 -0.41 0.63 16 28 H 0.08 1.30 6.75 -51.93 -0.35 0.95 16 29 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 30 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 31 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.87 8.14 -51.92 -0.42 0.44 16 38 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -38.60 340.78 -7.92 -46.52 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.79 Total: -2.95 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 0.24 Total: -15.17 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -2.68 Total: -45.61 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 22.67 SS G_CDS: -0.55 Total: 22.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -38.60 -7.92 -46.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.940 kcal (2) G-P(sol) polarization free energy of solvation -38.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.19 seconds