Wall clock time and date at job start Tue Mar 31 2020 08:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42097 * 108.58132 * 2 1 4 4 O 1.42104 * 108.57705 * 131.02737 * 2 1 3 5 5 C 1.81406 * 101.92197 * 245.51194 * 2 1 3 6 6 C 1.53005 * 109.47102 * 185.57605 * 5 2 1 7 7 C 1.52999 * 115.54829 * 295.75810 * 6 5 2 8 8 O 1.45192 * 109.47517 * 305.08643 * 7 6 5 9 9 C 1.34232 * 117.00178 * 180.02562 * 8 7 6 10 10 O 1.20822 * 119.99868 * 359.97438 * 9 8 7 11 11 C 1.50703 * 120.00047 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.46942 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46942 * 179.97438 * 12 11 9 14 14 H 1.08006 * 119.99830 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00237 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99702 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00488 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46866 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47386 * 119.99652 * 17 15 13 20 20 H 1.48497 * 109.46787 * 240.00070 * 17 15 13 21 21 C 1.53000 * 117.49620 * 150.09094 * 6 5 2 22 22 C 1.52994 * 117.49653 * 81.43169 * 6 5 2 23 23 H 1.09006 * 109.46892 * 54.48912 * 1 2 3 24 24 H 1.08994 * 109.47365 * 174.48635 * 1 2 3 25 25 H 1.08998 * 109.47242 * 294.49265 * 1 2 3 26 26 H 1.08996 * 109.47172 * 305.57192 * 5 2 1 27 27 H 1.08997 * 109.46935 * 65.57857 * 5 2 1 28 28 H 1.09001 * 109.47151 * 65.08489 * 7 6 5 29 29 H 1.09005 * 109.47010 * 185.08074 * 7 6 5 30 30 H 1.09004 * 109.47144 * 299.99873 * 11 9 8 31 31 H 1.08997 * 109.47052 * 59.99824 * 11 9 8 32 32 H 1.08992 * 109.47402 * 299.99654 * 12 11 9 33 33 H 1.09004 * 109.47112 * 60.00436 * 12 11 9 34 34 H 0.97003 * 119.99464 * 180.02562 * 16 15 13 35 35 H 1.08995 * 117.49898 * 359.97438 * 21 6 5 36 36 H 1.09002 * 117.49373 * 145.01948 * 21 6 5 37 37 H 1.09011 * 117.49768 * 214.97523 * 22 6 5 38 38 H 1.08997 * 117.50688 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 1.0162 5 6 2.1887 -0.7357 -1.6153 6 6 3.6988 -0.9472 -1.7414 7 6 4.5461 0.3268 -1.7369 8 8 4.0771 1.2238 -2.7777 9 6 4.7197 2.3950 -2.9081 10 8 5.6433 2.6620 -2.1763 11 6 4.2892 3.3770 -3.9671 12 6 5.1785 4.6203 -3.9015 13 6 4.7484 5.6019 -4.9610 14 1 3.9230 5.3631 -5.6153 15 6 5.4085 6.8049 -5.0949 16 7 6.4133 7.0960 -4.2977 17 14 4.8750 8.0221 -6.4077 18 1 3.7290 7.4605 -7.1670 19 1 4.4661 9.2964 -5.7644 20 1 6.0060 8.2766 -7.3356 21 6 4.1789 -2.1119 -2.6096 22 6 4.2946 -2.1943 -1.0854 23 1 -0.3633 0.5970 -0.8366 24 1 -0.3634 -1.0228 -0.0987 25 1 -0.3633 0.4260 0.9352 26 1 1.6788 -1.6949 -1.7047 27 1 1.8480 -0.0679 -2.4065 28 1 4.4588 0.8178 -0.7676 29 1 5.5893 0.0699 -1.9214 30 1 4.3818 2.9150 -4.9501 31 1 3.2515 3.6635 -3.7966 32 1 5.0855 5.0821 -2.9186 33 1 6.2164 4.3340 -4.0718 34 1 6.8774 7.9425 -4.3917 35 1 3.4190 -2.7278 -3.0905 36 1 5.0987 -1.9707 -3.1772 37 1 5.2906 -2.1074 -0.6510 38 1 3.6110 -2.8640 -0.5637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:15 Heat of formation + Delta-G solvation = -167.778652 kcal Electronic energy + Delta-G solvation = -21323.353791 eV Core-core repulsion = 17872.126076 eV Total energy + Delta-G solvation = -3451.227716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54883 -39.37420 -37.96766 -37.23870 -36.96643 -35.65062 -33.16659 -30.81922 -30.10441 -28.94344 -27.47865 -24.15359 -23.39335 -21.47145 -20.88275 -19.71143 -19.09259 -18.21176 -17.87433 -17.61185 -17.25204 -16.92793 -16.65682 -16.45507 -15.88990 -15.55524 -14.97311 -14.33763 -14.14750 -14.04063 -13.99678 -13.90324 -13.78911 -13.24569 -13.06624 -12.97787 -12.85521 -12.67772 -12.49977 -12.45277 -12.30704 -12.02042 -11.85775 -11.78784 -11.75174 -11.59203 -11.34101 -11.16235 -10.62057 -10.58574 -8.19401 -6.33758 -0.92207 1.24148 1.43405 1.45518 1.56995 1.60855 1.89966 2.43419 2.68432 2.76923 3.11506 3.14474 3.39108 3.50065 3.53353 3.85519 4.01988 4.09424 4.19449 4.24949 4.33993 4.40511 4.45767 4.47327 4.61206 4.76860 4.90336 4.95059 4.99232 5.02115 5.20429 5.35671 5.47216 5.54308 5.80727 6.12762 6.77939 6.86264 7.36714 8.93859 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.003463 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.487687 B = 8084.098044 C = 8592.172967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.636 4.636 2 S 2.392 3.608 3 O -0.996 6.996 4 O -0.975 6.975 5 C -0.555 4.555 6 C -0.155 4.155 7 C 0.077 3.923 8 O -0.342 6.342 9 C 0.462 3.538 10 O -0.549 6.549 11 C -0.092 4.092 12 C 0.036 3.964 13 C -0.542 4.542 14 H 0.081 0.919 15 C -0.006 4.006 16 N -0.938 5.938 17 Si 0.978 3.022 18 H -0.251 1.251 19 H -0.281 1.281 20 H -0.280 1.280 21 C -0.131 4.131 22 C -0.154 4.154 23 H 0.150 0.850 24 H 0.163 0.837 25 H 0.133 0.867 26 H 0.183 0.817 27 H 0.156 0.844 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.117 0.883 32 H -0.015 1.015 33 H -0.010 1.010 34 H 0.263 0.737 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.558 -23.676 3.513 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.581 3.419 3 O -0.993 6.993 4 O -0.972 6.972 5 C -0.685 4.685 6 C -0.156 4.156 7 C 0.003 3.997 8 O -0.259 6.259 9 C 0.307 3.693 10 O -0.439 6.439 11 C -0.130 4.130 12 C -0.002 4.002 13 C -0.580 4.580 14 H 0.099 0.901 15 C -0.204 4.204 16 N -0.578 5.578 17 Si 0.801 3.199 18 H -0.174 1.174 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.169 4.169 22 C -0.191 4.191 23 H 0.169 0.831 24 H 0.181 0.819 25 H 0.151 0.849 26 H 0.200 0.800 27 H 0.174 0.826 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.004 0.996 33 H 0.008 0.992 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.579 -23.193 4.482 27.758 hybrid contribution 0.161 0.974 -0.457 1.088 sum -14.417 -22.219 4.026 26.791 Atomic orbital electron populations 1.30084 1.21261 1.14290 1.13207 1.08267 0.80536 0.74681 0.78402 1.93600 1.81025 1.37344 1.87326 1.93531 1.80928 1.67061 1.55715 1.29747 1.00364 1.16606 1.21756 1.20842 0.92228 0.89189 1.13366 1.22778 0.98573 0.88445 0.89895 1.86441 1.58172 1.27783 1.53483 1.24646 0.79382 0.81209 0.84021 1.90623 1.30606 1.77196 1.45438 1.21537 1.02992 0.92408 0.96022 1.18824 0.93871 0.91536 0.95920 1.21672 1.17110 1.01970 1.17208 0.90118 1.26153 0.94784 1.00677 0.98777 1.70191 1.23053 1.24334 1.40221 0.85215 0.78643 0.77886 0.78137 1.17398 1.20718 1.20578 1.23288 1.03825 0.96696 0.93118 1.23438 1.03430 0.95504 0.96752 0.83139 0.81872 0.84871 0.79963 0.82621 0.92538 0.90559 0.86022 0.86526 0.99626 0.99185 0.92781 0.84847 0.88278 0.88102 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -4.40 10.62 113.37 1.20 -3.20 16 2 S 2.39 43.30 5.08 -56.49 -0.29 43.01 16 3 O -1.00 -30.98 16.58 -127.37 -2.11 -33.09 16 4 O -0.98 -23.09 17.98 -127.37 -2.29 -25.38 16 5 C -0.55 -6.82 5.52 71.98 0.40 -6.42 16 6 C -0.16 -2.96 1.84 -52.18 -0.10 -3.06 16 7 C 0.08 2.32 4.86 71.98 0.35 2.67 16 8 O -0.34 -11.60 9.76 -51.43 -0.50 -12.11 16 9 C 0.46 19.79 7.96 71.24 0.57 20.36 16 10 O -0.55 -28.26 15.73 21.98 0.35 -27.92 16 11 C -0.09 -3.89 5.75 29.85 0.17 -3.72 16 12 C 0.04 2.02 4.26 29.85 0.13 2.14 16 13 C -0.54 -30.82 9.11 25.60 0.23 -30.58 16 14 H 0.08 4.14 7.74 -2.91 -0.02 4.12 16 15 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 16 N -0.94 -59.65 13.29 21.45 0.28 -59.36 16 17 Si 0.98 44.17 29.54 68.60 2.03 46.20 16 18 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.13 -1.73 9.92 30.62 0.30 -1.43 16 22 C -0.15 -2.30 9.88 30.62 0.30 -1.99 16 23 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 25 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.18 0.34 8.10 -2.39 -0.02 0.32 16 27 H 0.16 1.68 7.86 -2.39 -0.02 1.66 16 28 H 0.06 1.98 6.75 -2.39 -0.02 1.96 16 29 H 0.08 2.26 8.09 -2.38 -0.02 2.24 16 30 H 0.12 4.39 8.14 -2.38 -0.02 4.37 16 31 H 0.12 4.36 8.14 -2.39 -0.02 4.35 16 32 H -0.01 -0.94 8.10 -2.39 -0.02 -0.96 16 33 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 34 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -90.43 340.78 2.53 -87.90 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.04 Total: 5.88 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 4.02 Total: -25.14 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.28 Total: -59.36 kcal Atomic # 8 Polarization: -93.94 SS G_CDS: -4.56 Total: -98.50 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 43.30 SS G_CDS: -0.29 Total: 43.01 kcal Total: -90.43 2.53 -87.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.877 kcal (2) G-P(sol) polarization free energy of solvation -90.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds