Wall clock time and date at job start Tue Mar 31 2020 08:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00149 * 2 1 4 4 H 1.48504 * 109.46870 * 269.99590 * 3 2 1 5 5 H 1.48491 * 109.47348 * 29.99369 * 3 2 1 6 6 H 1.48506 * 109.47280 * 149.99747 * 3 2 1 7 7 C 1.37886 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99783 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00026 * 180.02562 * 7 2 1 10 10 O 1.42893 * 109.47220 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00259 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47250 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47076 * 65.00325 * 12 11 10 14 14 C 1.34771 * 117.00295 * 179.97438 * 13 12 11 15 15 O 1.21525 * 119.99618 * 359.97438 * 14 13 12 16 16 C 1.47367 * 120.00120 * 179.97438 * 14 13 12 17 17 C 1.41091 * 119.40131 * 0.02562 * 16 14 13 18 18 C 1.35167 * 121.64869 * 179.74035 * 17 16 14 19 19 C 1.41402 * 119.93971 * 0.25816 * 18 17 16 20 20 N 1.31912 * 134.38976 * 179.97438 * 19 18 17 21 21 N 1.39917 * 109.07114 * 180.02562 * 20 19 18 22 22 H 0.97001 * 124.98137 * 180.02562 * 21 20 19 23 23 C 1.33808 * 110.02909 * 0.02562 * 21 20 19 24 24 C 1.38551 * 107.83278 * 359.97438 * 23 21 20 25 25 C 1.38301 * 119.40084 * 180.24469 * 16 14 13 26 26 H 0.96992 * 119.99650 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46481 * 60.00105 * 9 7 2 28 28 H 1.09000 * 109.46899 * 300.00678 * 9 7 2 29 29 H 1.09004 * 109.46588 * 60.00533 * 11 10 9 30 30 H 1.08996 * 109.47424 * 300.00718 * 11 10 9 31 31 H 1.09002 * 109.47132 * 305.00402 * 12 11 10 32 32 H 1.09006 * 109.47069 * 185.00241 * 12 11 10 33 33 H 1.08002 * 119.17898 * 0.02562 * 17 16 14 34 34 H 1.07998 * 120.03219 * 180.23459 * 18 17 16 35 35 H 1.08004 * 126.08301 * 180.02562 * 23 21 20 36 36 H 1.08001 * 120.32679 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4123 -2.6543 0.0009 12 6 5.8068 -4.1327 0.0002 13 8 5.3727 -4.7488 -1.2408 14 6 5.6455 -6.0587 -1.4019 15 8 6.2306 -6.6692 -0.5291 16 6 5.2342 -6.7507 -2.6362 17 6 4.5560 -6.0295 -3.6415 18 6 4.1627 -6.6174 -4.7934 19 6 4.4247 -7.9899 -5.0105 20 7 4.1782 -8.8318 -5.9956 21 7 4.6770 -10.0937 -5.6541 22 1 4.6204 -10.8840 -6.2136 23 6 5.2433 -10.0501 -4.4426 24 6 5.1265 -8.7544 -3.9660 25 6 5.5160 -8.0964 -2.7863 26 1 -0.4849 0.8400 -0.0004 27 1 3.8744 -0.6802 0.8912 28 1 3.8752 -0.6805 -0.8888 29 1 5.8151 -2.1709 0.8911 30 1 5.8152 -2.1707 -0.8889 31 1 5.3309 -4.6361 0.8417 32 1 6.8897 -4.2198 0.0897 33 1 4.3499 -4.9804 -3.4889 34 1 3.6486 -6.0395 -5.5470 35 1 5.7094 -10.8776 -3.9282 36 1 6.0324 -8.6357 -2.0060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815167915.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:57 Heat of formation + Delta-G solvation = -35.145920 kcal Electronic energy + Delta-G solvation = -21444.994138 eV Core-core repulsion = 17896.366609 eV Total energy + Delta-G solvation = -3548.627529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -41.64227 -40.19638 -37.48848 -36.87987 -35.97329 -32.67754 -32.51082 -31.24679 -30.27938 -29.28550 -27.56782 -25.23090 -23.26566 -22.25073 -21.83594 -21.05837 -20.76468 -18.68490 -17.80477 -17.03788 -16.82691 -16.60781 -16.40126 -15.38588 -15.18821 -14.89398 -14.58679 -14.42109 -14.26773 -13.96998 -13.34885 -13.10880 -12.99959 -12.50686 -12.38661 -11.98874 -11.77056 -11.65498 -11.13809 -10.86627 -10.71174 -10.68020 -10.62145 -10.42388 -10.35467 -9.85540 -9.18323 -9.13919 -8.88338 -8.48542 -7.98957 -6.10102 -4.09282 0.14233 1.18759 1.99070 2.27088 2.67584 2.79699 3.25892 3.32822 3.33594 3.69079 3.92912 4.21359 4.36383 4.51256 4.69741 4.75389 4.84680 5.03755 5.19620 5.21002 5.25424 5.39476 5.43331 5.73352 5.79768 5.81967 5.96549 6.08364 6.19428 6.27912 6.52161 6.57873 6.60096 6.62887 6.98908 7.19729 7.59511 7.89358 7.98841 8.65693 9.01915 9.48697 11.02954 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.003011 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.577975 B = 9298.335984 C =10228.492620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.375 6.375 11 C 0.057 3.943 12 C 0.076 3.924 13 O -0.336 6.336 14 C 0.512 3.488 15 O -0.522 6.522 16 C -0.155 4.155 17 C -0.033 4.033 18 C -0.115 4.115 19 C 0.127 3.873 20 N -0.309 5.309 21 N -0.423 5.423 22 H 0.445 0.555 23 C 0.108 3.892 24 C -0.227 4.227 25 C 0.041 3.959 26 H 0.266 0.734 27 H 0.004 0.996 28 H 0.001 0.999 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.194 0.806 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.816 -19.514 -9.366 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.294 6.294 11 C -0.020 4.020 12 C 0.002 3.998 13 O -0.252 6.252 14 C 0.358 3.642 15 O -0.413 6.413 16 C -0.158 4.158 17 C -0.056 4.056 18 C -0.136 4.136 19 C -0.028 4.028 20 N -0.137 5.137 21 N -0.122 5.122 22 H 0.290 0.710 23 C -0.052 4.052 24 C -0.236 4.236 25 C 0.020 3.980 26 H 0.076 0.924 27 H 0.021 0.979 28 H 0.018 0.982 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.211 0.789 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.140 -19.810 -10.305 26.430 hybrid contribution 0.914 0.749 0.665 1.356 sum 15.053 -19.061 -9.640 26.132 Atomic orbital electron populations 1.69877 1.06065 1.27084 1.50311 1.24773 0.94809 0.98743 0.94660 0.86847 0.80315 0.83761 0.78791 1.19882 1.20812 1.19109 1.20888 0.88217 0.95377 1.51206 0.89885 1.20629 0.96307 0.79303 0.94450 1.87982 1.16657 1.29683 1.95077 1.22407 0.86117 0.92890 1.00630 1.23176 0.99127 0.93075 0.84431 1.86640 1.73563 1.23635 1.41327 1.21015 0.75741 0.80921 0.86481 1.90805 1.39977 1.67165 1.43389 1.18724 1.08646 0.93768 0.94633 1.20936 0.92725 1.00930 0.90976 1.19818 1.04708 0.90044 0.99077 1.21158 0.95467 0.95091 0.91061 1.77712 1.25455 0.88612 1.21903 1.46379 1.40528 1.11394 1.13884 0.70998 1.22871 0.96630 0.98189 0.87467 1.19483 1.12059 0.93370 0.98724 1.20653 0.91450 0.92079 0.93795 0.92357 0.97876 0.98156 0.91825 0.92997 0.90282 0.90261 0.83403 0.84473 0.78905 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.70 13.96 55.43 0.77 -26.92 16 2 C 0.07 2.12 5.47 -17.81 -0.10 2.02 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -15.49 9.99 -34.44 -0.34 -15.83 16 8 H 0.08 2.72 8.06 -52.49 -0.42 2.30 16 9 C 0.17 4.25 4.76 36.00 0.17 4.42 16 10 O -0.37 -8.73 10.30 -38.80 -0.40 -9.13 16 11 C 0.06 0.98 6.33 37.16 0.24 1.21 16 12 C 0.08 1.16 5.86 37.16 0.22 1.38 16 13 O -0.34 -5.57 9.35 -43.47 -0.41 -5.97 16 14 C 0.51 7.90 7.87 34.45 0.27 8.17 16 15 O -0.52 -8.69 16.05 -19.29 -0.31 -9.00 16 16 C -0.15 -2.05 5.86 -105.08 -0.62 -2.67 16 17 C -0.03 -0.42 9.46 -39.59 -0.37 -0.80 16 18 C -0.12 -1.39 10.05 -39.47 -0.40 -1.78 16 19 C 0.13 1.52 7.49 -82.97 -0.62 0.90 16 20 N -0.31 -3.47 12.69 33.31 0.42 -3.04 16 21 N -0.42 -2.75 7.17 30.87 0.22 -2.53 16 22 H 0.45 1.07 8.96 -182.73 -1.64 -0.57 16 23 C 0.11 0.64 12.09 -16.58 -0.20 0.44 16 24 C -0.23 -2.28 6.32 -105.24 -0.66 -2.94 16 25 C 0.04 0.45 9.64 -38.67 -0.37 0.08 16 26 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 27 H 0.00 0.09 7.20 -51.93 -0.37 -0.29 16 28 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.15 1.90 7.51 -52.49 -0.39 1.50 16 34 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.19 0.22 8.06 -52.48 -0.42 -0.20 16 36 H 0.14 1.33 7.58 -52.49 -0.40 0.93 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -37.14 322.77 -7.62 -44.76 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.32 Total: -4.26 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.79 Total: -5.40 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 1.42 Total: -32.50 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.12 Total: -24.10 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -37.14 -7.62 -44.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815167915.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.611 kcal (2) G-P(sol) polarization free energy of solvation -37.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds