Wall clock time and date at job start Tue Mar 31 2020 08:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00149 * 2 1 4 4 H 1.48504 * 109.46870 * 269.99590 * 3 2 1 5 5 H 1.48491 * 109.47348 * 29.99369 * 3 2 1 6 6 H 1.48506 * 109.47280 * 149.99747 * 3 2 1 7 7 C 1.37886 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99783 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00026 * 180.02562 * 7 2 1 10 10 O 1.42893 * 109.47220 * 180.02562 * 9 7 2 11 11 C 1.42897 * 114.00259 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47250 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47076 * 65.00325 * 12 11 10 14 14 C 1.34771 * 117.00295 * 179.97438 * 13 12 11 15 15 O 1.21525 * 119.99618 * 359.97438 * 14 13 12 16 16 C 1.47367 * 120.00120 * 179.97438 * 14 13 12 17 17 C 1.41091 * 119.40131 * 0.02562 * 16 14 13 18 18 C 1.35167 * 121.64869 * 179.74035 * 17 16 14 19 19 C 1.41402 * 119.93971 * 0.25816 * 18 17 16 20 20 N 1.31912 * 134.38976 * 179.97438 * 19 18 17 21 21 N 1.39917 * 109.07114 * 180.02562 * 20 19 18 22 22 H 0.97001 * 124.98137 * 180.02562 * 21 20 19 23 23 C 1.33808 * 110.02909 * 0.02562 * 21 20 19 24 24 C 1.38551 * 107.83278 * 359.97438 * 23 21 20 25 25 C 1.38301 * 119.40084 * 180.24469 * 16 14 13 26 26 H 0.96992 * 119.99650 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46481 * 60.00105 * 9 7 2 28 28 H 1.09000 * 109.46899 * 300.00678 * 9 7 2 29 29 H 1.09004 * 109.46588 * 60.00533 * 11 10 9 30 30 H 1.08996 * 109.47424 * 300.00718 * 11 10 9 31 31 H 1.09002 * 109.47132 * 305.00402 * 12 11 10 32 32 H 1.09006 * 109.47069 * 185.00241 * 12 11 10 33 33 H 1.08002 * 119.17898 * 0.02562 * 17 16 14 34 34 H 1.07998 * 120.03219 * 180.23459 * 18 17 16 35 35 H 1.08004 * 126.08301 * 180.02562 * 23 21 20 36 36 H 1.08001 * 120.32679 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4123 -2.6543 0.0009 12 6 5.8068 -4.1327 0.0002 13 8 5.3727 -4.7488 -1.2408 14 6 5.6455 -6.0587 -1.4019 15 8 6.2306 -6.6692 -0.5291 16 6 5.2342 -6.7507 -2.6362 17 6 4.5560 -6.0295 -3.6415 18 6 4.1627 -6.6174 -4.7934 19 6 4.4247 -7.9899 -5.0105 20 7 4.1782 -8.8318 -5.9956 21 7 4.6770 -10.0937 -5.6541 22 1 4.6204 -10.8840 -6.2136 23 6 5.2433 -10.0501 -4.4426 24 6 5.1265 -8.7544 -3.9660 25 6 5.5160 -8.0964 -2.7863 26 1 -0.4849 0.8400 -0.0004 27 1 3.8744 -0.6802 0.8912 28 1 3.8752 -0.6805 -0.8888 29 1 5.8151 -2.1709 0.8911 30 1 5.8152 -2.1707 -0.8889 31 1 5.3309 -4.6361 0.8417 32 1 6.8897 -4.2198 0.0897 33 1 4.3499 -4.9804 -3.4889 34 1 3.6486 -6.0395 -5.5470 35 1 5.7094 -10.8776 -3.9282 36 1 6.0324 -8.6357 -2.0060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815167915.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:56 Heat of formation + Delta-G solvation = -61.817400 kcal Electronic energy + Delta-G solvation = -21446.150700 eV Core-core repulsion = 17896.366609 eV Total energy + Delta-G solvation = -3549.784091 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.38005 -41.34352 -38.86095 -38.03540 -37.25391 -34.87229 -33.31334 -32.20126 -31.58433 -30.23140 -29.46943 -26.11188 -24.26275 -23.97844 -23.38239 -21.89808 -21.72261 -19.45917 -19.09423 -18.67222 -17.95760 -17.85160 -17.59173 -16.95699 -16.42963 -16.30745 -15.94475 -15.39780 -15.30283 -15.00518 -14.70735 -14.34142 -14.31210 -14.00102 -13.76216 -13.30248 -13.01020 -12.83180 -12.62962 -12.57957 -12.26366 -11.83482 -11.67656 -11.62508 -11.46875 -11.40959 -11.32338 -10.91477 -10.37746 -9.94711 -8.80754 -8.35443 -6.43784 -0.59969 0.22920 1.27547 1.35748 1.39423 1.50057 1.62064 1.69084 1.78855 2.31698 2.77228 2.97148 2.99488 3.16873 3.60244 3.70100 3.97955 4.01960 4.12485 4.17223 4.34327 4.39550 4.45739 4.47272 4.53844 4.62027 4.74743 5.01040 5.02333 5.20181 5.28064 5.35522 5.44743 5.47405 5.66159 5.93567 6.18395 6.46441 6.60258 6.71275 6.76585 7.20444 8.81986 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.003011 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.577975 B = 9298.335984 C =10228.492620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.240 1.240 7 C -0.548 4.548 8 H 0.027 0.973 9 C 0.178 3.822 10 O -0.407 6.407 11 C 0.050 3.950 12 C 0.074 3.926 13 O -0.355 6.355 14 C 0.513 3.487 15 O -0.541 6.541 16 C -0.195 4.195 17 C -0.039 4.039 18 C -0.130 4.130 19 C 0.109 3.891 20 N -0.348 5.348 21 N -0.407 5.407 22 H 0.465 0.535 23 C 0.159 3.841 24 C -0.259 4.259 25 C 0.069 3.931 26 H 0.273 0.727 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.255 0.745 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.540 -20.600 -9.678 28.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.164 1.164 7 C -0.585 4.585 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.327 6.327 11 C -0.026 4.026 12 C 0.001 3.999 13 O -0.271 6.271 14 C 0.361 3.639 15 O -0.434 6.434 16 C -0.198 4.198 17 C -0.061 4.061 18 C -0.151 4.151 19 C -0.045 4.045 20 N -0.176 5.176 21 N -0.106 5.106 22 H 0.314 0.686 23 C -0.002 4.002 24 C -0.269 4.269 25 C 0.048 3.952 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.270 0.730 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 16.867 -20.934 -10.653 28.917 hybrid contribution 0.040 0.762 0.680 1.022 sum 16.907 -20.172 -9.973 28.146 Atomic orbital electron populations 1.70045 1.08394 1.28808 1.51108 1.25899 0.95834 1.03584 0.93394 0.85565 0.79543 0.77130 0.79828 1.18391 1.19982 1.16367 1.21189 0.91163 0.93772 1.52421 0.95501 1.20358 0.93178 0.80687 0.95490 1.87928 1.20772 1.28633 1.95377 1.22771 0.82746 0.94483 1.02647 1.23257 1.00876 0.91921 0.83834 1.86638 1.74086 1.24593 1.41816 1.21360 0.75204 0.80383 0.86948 1.90769 1.41241 1.67252 1.44174 1.18689 1.11753 0.94968 0.94345 1.20804 0.93385 1.00417 0.91540 1.19857 1.05309 0.90956 0.98982 1.21275 0.95934 0.95215 0.92122 1.77652 1.27217 0.90256 1.22505 1.46466 1.38963 1.10837 1.14373 0.68590 1.23770 0.92647 0.97769 0.86039 1.19789 1.13587 0.95102 0.98406 1.20852 0.89141 0.91045 0.94125 0.91811 0.96326 0.96736 0.88989 0.91543 0.91327 0.86968 0.84809 0.84289 0.72954 0.82225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.28 13.96 21.45 0.30 -59.98 16 2 C 0.01 0.63 5.47 84.66 0.46 1.10 16 3 Si 0.96 43.36 27.47 68.60 1.88 45.24 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 7 C -0.55 -33.94 9.99 25.60 0.26 -33.68 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 9 C 0.18 8.96 4.76 71.23 0.34 9.30 16 10 O -0.41 -19.25 10.30 -145.57 -1.50 -20.75 16 11 C 0.05 1.65 6.33 71.98 0.46 2.11 16 12 C 0.07 2.26 5.86 71.98 0.42 2.68 16 13 O -0.36 -12.15 9.35 -54.16 -0.51 -12.66 16 14 C 0.51 16.25 7.87 70.23 0.55 16.81 16 15 O -0.54 -18.03 16.05 19.75 0.32 -17.72 16 16 C -0.19 -5.32 5.86 -20.16 -0.12 -5.44 16 17 C -0.04 -1.08 9.46 22.26 0.21 -0.87 16 18 C -0.13 -3.34 10.05 22.34 0.22 -3.11 16 19 C 0.11 2.59 7.49 42.28 0.32 2.91 16 20 N -0.35 -7.42 12.69 -48.53 -0.62 -8.03 16 21 N -0.41 -3.89 7.17 -56.25 -0.40 -4.30 16 22 H 0.47 0.41 8.96 -213.44 -1.91 -1.51 16 23 C 0.16 1.16 12.09 84.47 1.02 2.18 16 24 C -0.26 -4.66 6.32 -20.26 -0.13 -4.79 16 25 C 0.07 1.43 9.64 22.86 0.22 1.65 16 26 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 27 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 28 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 29 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 33 H 0.13 3.89 7.51 -2.91 -0.02 3.87 16 34 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 35 H 0.25 -1.28 8.06 -2.91 -0.02 -1.30 16 36 H 0.16 2.64 7.58 -2.91 -0.02 2.62 16 Total: -1.00 -86.30 322.77 2.86 -83.43 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -0.85 Total: 3.92 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 4.23 Total: -9.15 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -0.72 Total: -72.31 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -1.69 Total: -51.13 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Total: -86.30 2.86 -83.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815167915.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.614 kcal (2) G-P(sol) polarization free energy of solvation -86.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds