Wall clock time and date at job start Tue Mar 31 2020 08:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00233 * 2 1 4 4 H 1.48498 * 109.46959 * 270.00030 * 3 2 1 5 5 H 1.48500 * 109.47122 * 29.99679 * 3 2 1 6 6 H 1.48498 * 109.47223 * 149.99623 * 3 2 1 7 7 C 1.37877 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00280 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00149 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99860 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47124 * 180.02562 * 11 10 9 13 13 O 1.45210 * 109.47138 * 64.99824 * 12 11 10 14 14 C 1.34775 * 116.99711 * 180.02562 * 13 12 11 15 15 O 1.21534 * 120.00466 * 0.02562 * 14 13 12 16 16 C 1.47251 * 119.99825 * 180.02562 * 14 13 12 17 17 N 1.31627 * 126.82569 * 0.02562 * 16 14 13 18 18 N 1.28382 * 111.95218 * 180.02562 * 17 16 14 19 19 H 0.97006 * 124.36701 * 179.97438 * 18 17 16 20 20 C 1.37053 * 111.26997 * 359.97438 * 18 17 16 21 21 C 1.39127 * 134.72271 * 180.02562 * 20 18 17 22 22 C 1.36682 * 119.78420 * 179.97438 * 21 20 18 23 23 C 1.38887 * 120.89908 * 359.97438 * 22 21 20 24 24 C 1.36731 * 120.51785 * 0.02562 * 23 22 21 25 25 C 1.39176 * 119.51100 * 0.27759 * 24 23 22 26 26 H 0.97007 * 119.99680 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47083 * 59.99544 * 9 7 2 28 28 H 1.09003 * 109.46889 * 299.99887 * 9 7 2 29 29 H 1.08991 * 109.47249 * 60.00112 * 11 10 9 30 30 H 1.09007 * 109.47307 * 299.99733 * 11 10 9 31 31 H 1.08997 * 109.47114 * 305.00368 * 12 11 10 32 32 H 1.09001 * 109.47201 * 184.99766 * 12 11 10 33 33 H 1.08003 * 120.10106 * 0.02562 * 21 20 18 34 34 H 1.08008 * 119.54801 * 179.97438 * 22 21 20 35 35 H 1.07997 * 119.74493 * 179.97438 * 23 22 21 36 36 H 1.08002 * 120.24124 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 8 3.3983 -5.8887 1.2420 14 6 4.3970 -6.7795 1.4024 15 8 4.6345 -7.5901 0.5286 16 6 5.2004 -6.7705 2.6364 17 7 5.0609 -5.9582 3.6627 18 7 5.9165 -6.2029 4.5881 19 1 5.9751 -5.7127 5.4232 20 6 6.7364 -7.2458 4.2441 21 6 7.7985 -7.9005 4.8598 22 6 8.4184 -8.9380 4.2215 23 6 8.0026 -9.3515 2.9625 24 6 6.9614 -8.7256 2.3349 25 6 6.3204 -7.6628 2.9645 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 0.9452 -4.9821 -0.8902 30 1 0.9445 -4.9827 0.8898 31 1 3.3221 -5.7956 -0.8406 32 1 2.1820 -6.9375 -0.0893 33 1 8.1314 -7.5902 5.8393 34 1 9.2428 -9.4432 4.7028 35 1 8.5060 -10.1732 2.4750 36 1 6.6421 -9.0505 1.3556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815172682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:16 Heat of formation + Delta-G solvation = -43.961655 kcal Electronic energy + Delta-G solvation = -21543.582943 eV Core-core repulsion = 17994.573135 eV Total energy + Delta-G solvation = -3549.009808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.74990 -40.00143 -38.06525 -37.00228 -35.94243 -32.91178 -32.71574 -30.53781 -30.50606 -29.76220 -26.93559 -25.01787 -23.58116 -22.69766 -22.38445 -21.91875 -20.45628 -18.49214 -18.05623 -16.75948 -16.62630 -16.58735 -16.16996 -15.83104 -15.55692 -15.13323 -14.56670 -14.45607 -14.29002 -14.13673 -13.54149 -12.89684 -12.60952 -12.50833 -12.34302 -11.94153 -11.54703 -11.39913 -11.19717 -10.92020 -10.83585 -10.77154 -10.52696 -10.47738 -10.33664 -10.02190 -9.10888 -9.09505 -8.83989 -8.44848 -8.17569 -6.09233 -4.10430 0.50514 1.01516 1.55534 2.28673 2.76171 2.97804 3.32003 3.36680 3.42774 3.47151 4.10345 4.14996 4.35292 4.50084 4.64939 4.76783 4.88783 5.06756 5.16937 5.26197 5.27374 5.33608 5.50508 5.63297 5.84014 5.90775 5.96148 6.06617 6.14982 6.18449 6.44951 6.53872 6.68963 7.09192 7.43711 7.46191 7.81293 7.87793 8.16025 8.56577 9.02459 9.54092 11.02406 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.003009 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.015009 B = 9303.313834 C =10135.163439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.074 3.926 13 O -0.324 6.324 14 C 0.556 3.444 15 O -0.505 6.505 16 C 0.014 3.986 17 N -0.164 5.164 18 N -0.408 5.408 19 H 0.451 0.549 20 C 0.062 3.938 21 C -0.116 4.116 22 C -0.085 4.085 23 C -0.138 4.138 24 C -0.046 4.046 25 C -0.104 4.104 26 H 0.264 0.736 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.366 -19.543 9.897 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.001 3.999 13 O -0.239 6.239 14 C 0.399 3.601 15 O -0.391 6.391 16 C -0.155 4.155 17 N 0.005 4.995 18 N -0.129 5.129 19 H 0.296 0.704 20 C -0.051 4.051 21 C -0.138 4.138 22 C -0.106 4.106 23 C -0.157 4.157 24 C -0.066 4.066 25 C -0.111 4.111 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.773 -18.719 9.947 25.280 hybrid contribution 0.447 0.569 0.144 0.738 sum 14.221 -18.150 10.092 25.169 Atomic orbital electron populations 1.69964 1.06087 1.27134 1.50683 1.24945 0.94985 0.99420 0.95175 0.86331 0.79687 0.82229 0.78222 1.20463 1.21082 1.19621 1.21059 0.94120 0.89324 1.50651 0.91516 1.20232 0.88747 0.83513 0.95490 1.87926 1.35259 1.12591 1.95219 1.22324 0.93195 0.85451 1.00628 1.23312 0.93686 0.99021 0.83907 1.86747 1.42642 1.52931 1.41549 1.19260 0.78375 0.78480 0.84021 1.90835 1.68260 1.38338 1.41685 1.21543 1.00193 0.99127 0.94595 1.73221 1.09959 1.19235 0.97129 1.43240 1.24728 1.27366 1.17607 0.70359 1.19241 0.96821 0.93116 0.95911 1.19807 0.95351 0.97794 1.00826 1.20762 0.99108 0.95718 0.94991 1.20864 0.97885 1.01270 0.95676 1.20417 0.93834 0.92400 0.99957 1.19339 0.97558 0.99479 0.94748 0.92671 0.97611 0.97469 0.91781 0.93112 0.90191 0.90126 0.85187 0.85000 0.85093 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -15.46 9.43 -34.44 -0.32 -15.79 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.43 5.69 36.00 0.20 5.64 16 10 O -0.39 -9.75 10.30 -38.79 -0.40 -10.15 16 11 C 0.06 1.16 6.33 37.16 0.24 1.40 16 12 C 0.07 1.23 5.86 37.16 0.22 1.44 16 13 O -0.32 -5.96 10.20 -43.48 -0.44 -6.41 16 14 C 0.56 9.43 7.95 34.39 0.27 9.70 16 15 O -0.50 -8.70 16.19 -19.29 -0.31 -9.01 16 16 C 0.01 0.21 7.36 -80.78 -0.59 -0.38 16 17 N -0.16 -2.39 12.11 34.45 0.42 -1.97 16 18 N -0.41 -4.27 6.85 32.34 0.22 -4.05 16 19 H 0.45 2.89 8.96 -190.49 -1.71 1.19 16 20 C 0.06 0.65 7.38 -84.21 -0.62 0.02 16 21 C -0.12 -0.87 10.03 -39.81 -0.40 -1.27 16 22 C -0.09 -0.58 9.96 -39.90 -0.40 -0.98 16 23 C -0.14 -1.09 9.98 -39.89 -0.40 -1.49 16 24 C -0.05 -0.50 9.87 -39.78 -0.39 -0.89 16 25 C -0.10 -1.34 6.34 -105.04 -0.67 -2.01 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 34 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.14 1.50 7.65 -52.49 -0.40 1.09 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -35.74 327.18 -8.29 -44.03 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -5.46 Total: -5.02 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.96 Total: -3.06 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 1.37 Total: -32.48 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -1.16 Total: -25.57 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.74 -8.29 -44.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.073 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds