Wall clock time and date at job start Tue Mar 31 2020 08:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00233 * 2 1 4 4 H 1.48498 * 109.46959 * 270.00030 * 3 2 1 5 5 H 1.48500 * 109.47122 * 29.99679 * 3 2 1 6 6 H 1.48498 * 109.47223 * 149.99623 * 3 2 1 7 7 C 1.37877 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00280 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00149 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99860 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47124 * 180.02562 * 11 10 9 13 13 O 1.45210 * 109.47138 * 64.99824 * 12 11 10 14 14 C 1.34775 * 116.99711 * 180.02562 * 13 12 11 15 15 O 1.21534 * 120.00466 * 0.02562 * 14 13 12 16 16 C 1.47251 * 119.99825 * 180.02562 * 14 13 12 17 17 N 1.31627 * 126.82569 * 0.02562 * 16 14 13 18 18 N 1.28382 * 111.95218 * 180.02562 * 17 16 14 19 19 H 0.97006 * 124.36701 * 179.97438 * 18 17 16 20 20 C 1.37053 * 111.26997 * 359.97438 * 18 17 16 21 21 C 1.39127 * 134.72271 * 180.02562 * 20 18 17 22 22 C 1.36682 * 119.78420 * 179.97438 * 21 20 18 23 23 C 1.38887 * 120.89908 * 359.97438 * 22 21 20 24 24 C 1.36731 * 120.51785 * 0.02562 * 23 22 21 25 25 C 1.39176 * 119.51100 * 0.27759 * 24 23 22 26 26 H 0.97007 * 119.99680 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47083 * 59.99544 * 9 7 2 28 28 H 1.09003 * 109.46889 * 299.99887 * 9 7 2 29 29 H 1.08991 * 109.47249 * 60.00112 * 11 10 9 30 30 H 1.09007 * 109.47307 * 299.99733 * 11 10 9 31 31 H 1.08997 * 109.47114 * 305.00368 * 12 11 10 32 32 H 1.09001 * 109.47201 * 184.99766 * 12 11 10 33 33 H 1.08003 * 120.10106 * 0.02562 * 21 20 18 34 34 H 1.08008 * 119.54801 * 179.97438 * 22 21 20 35 35 H 1.07997 * 119.74493 * 179.97438 * 23 22 21 36 36 H 1.08002 * 120.24124 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 8 3.3983 -5.8887 1.2420 14 6 4.3970 -6.7795 1.4024 15 8 4.6345 -7.5901 0.5286 16 6 5.2004 -6.7705 2.6364 17 7 5.0609 -5.9582 3.6627 18 7 5.9165 -6.2029 4.5881 19 1 5.9751 -5.7127 5.4232 20 6 6.7364 -7.2458 4.2441 21 6 7.7985 -7.9005 4.8598 22 6 8.4184 -8.9380 4.2215 23 6 8.0026 -9.3515 2.9625 24 6 6.9614 -8.7256 2.3349 25 6 6.3204 -7.6628 2.9645 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 0.9452 -4.9821 -0.8902 30 1 0.9445 -4.9827 0.8898 31 1 3.3221 -5.7956 -0.8406 32 1 2.1820 -6.9375 -0.0893 33 1 8.1314 -7.5902 5.8393 34 1 9.2428 -9.4432 4.7028 35 1 8.5060 -10.1732 2.4750 36 1 6.6421 -9.0505 1.3556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815172682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:15 Heat of formation + Delta-G solvation = -68.227641 kcal Electronic energy + Delta-G solvation = -21544.635195 eV Core-core repulsion = 17994.573135 eV Total energy + Delta-G solvation = -3550.062060 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 4.66 seconds Orbital eigenvalues (eV) -43.63108 -41.31522 -38.78854 -38.74054 -37.44446 -34.96533 -33.77502 -31.80312 -31.30374 -30.84078 -29.05852 -26.20673 -24.57807 -24.32948 -23.56102 -23.25077 -21.61963 -19.32794 -19.11559 -18.69698 -18.00171 -17.77087 -17.47836 -17.23037 -16.65474 -16.31056 -16.21528 -16.17012 -15.37264 -15.08573 -14.77763 -14.41295 -14.20636 -13.75770 -13.24754 -13.22918 -12.94000 -12.93366 -12.72483 -12.50741 -12.28454 -12.20727 -12.02546 -11.78598 -11.71273 -11.34923 -11.29641 -10.91088 -10.28430 -9.86293 -9.20842 -8.33834 -6.46005 -0.39547 0.26696 0.64929 1.27440 1.38320 1.41464 1.53575 1.81744 1.85960 2.33328 2.75354 2.99788 3.04618 3.12398 3.36171 3.63483 3.90413 4.08077 4.09813 4.10884 4.37102 4.40886 4.42176 4.49925 4.63926 4.70905 4.83721 5.01155 5.11096 5.16223 5.23236 5.42975 5.52586 5.53605 5.78362 5.93695 6.02097 6.42736 6.49506 6.70731 6.78216 7.25434 8.78500 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.003009 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.015009 B = 9303.313834 C =10135.163439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.208 3.792 10 O -0.411 6.411 11 C 0.054 3.946 12 C 0.076 3.924 13 O -0.348 6.348 14 C 0.555 3.445 15 O -0.517 6.517 16 C -0.026 4.026 17 N -0.190 5.190 18 N -0.387 5.387 19 H 0.466 0.534 20 C 0.053 3.947 21 C -0.107 4.107 22 C -0.079 4.079 23 C -0.122 4.122 24 C -0.078 4.078 25 C -0.128 4.128 26 H 0.272 0.728 27 H -0.005 1.005 28 H -0.012 1.012 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.168 0.832 34 H 0.174 0.826 35 H 0.159 0.841 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.770 -20.126 11.400 28.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.133 3.867 10 O -0.331 6.331 11 C -0.023 4.023 12 C 0.004 3.996 13 O -0.263 6.263 14 C 0.398 3.602 15 O -0.405 6.405 16 C -0.192 4.192 17 N -0.024 5.024 18 N -0.112 5.112 19 H 0.316 0.684 20 C -0.060 4.060 21 C -0.128 4.128 22 C -0.099 4.099 23 C -0.141 4.141 24 C -0.098 4.098 25 C -0.135 4.135 26 H 0.081 0.919 27 H 0.012 0.988 28 H 0.006 0.994 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.185 0.815 34 H 0.191 0.809 35 H 0.177 0.823 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 16.174 -19.329 11.452 27.683 hybrid contribution -0.222 0.598 -0.232 0.679 sum 15.951 -18.731 11.220 27.041 Atomic orbital electron populations 1.70060 1.07646 1.28712 1.50358 1.25947 0.96014 1.03307 0.93841 0.85188 0.78294 0.77025 0.78930 1.19105 1.19628 1.19183 1.21380 0.94004 0.91029 1.52486 0.92412 1.19873 0.88550 0.84356 0.93898 1.87872 1.35602 1.14276 1.95334 1.22666 0.94408 0.83249 1.01972 1.23351 0.93179 0.99641 0.83479 1.86729 1.43477 1.53889 1.42211 1.19568 0.77997 0.77902 0.84696 1.90796 1.68621 1.38741 1.42329 1.21504 1.01858 1.01248 0.94564 1.73092 1.11490 1.19910 0.97922 1.43261 1.23560 1.27097 1.17273 0.68448 1.19576 0.97730 0.93248 0.95427 1.20332 0.93507 0.96918 1.02039 1.21292 0.99426 0.95005 0.94206 1.21280 0.96044 1.00770 0.95977 1.20504 0.95732 0.93304 1.00280 1.19585 0.97449 1.00233 0.96244 0.91937 0.98765 0.99394 0.89371 0.92717 0.90449 0.86668 0.81493 0.80882 0.82295 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.98 45.44 29.54 68.60 2.03 47.47 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.55 -34.08 9.43 25.60 0.24 -33.84 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.21 12.08 5.69 71.24 0.41 12.49 16 10 O -0.41 -21.29 10.30 -145.58 -1.50 -22.79 16 11 C 0.05 2.07 6.33 71.98 0.46 2.53 16 12 C 0.08 2.58 5.86 71.98 0.42 3.00 16 13 O -0.35 -13.42 10.20 -54.20 -0.55 -13.98 16 14 C 0.55 19.91 7.95 70.19 0.56 20.47 16 15 O -0.52 -18.76 16.19 19.72 0.32 -18.44 16 16 C -0.03 -0.84 7.36 43.82 0.32 -0.51 16 17 N -0.19 -5.75 12.11 -44.94 -0.54 -6.29 16 18 N -0.39 -7.93 6.85 -51.59 -0.35 -8.29 16 19 H 0.47 5.49 8.96 -220.03 -1.97 3.52 16 20 C 0.05 1.04 7.38 39.18 0.29 1.33 16 21 C -0.11 -1.21 10.03 22.12 0.22 -0.99 16 22 C -0.08 -0.73 9.96 22.06 0.22 -0.51 16 23 C -0.12 -1.60 9.98 22.07 0.22 -1.38 16 24 C -0.08 -1.68 9.87 22.14 0.22 -1.46 16 25 C -0.13 -3.36 6.34 -20.14 -0.13 -3.48 16 26 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 27 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 28 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.17 0.25 8.06 -2.91 -0.02 0.22 16 35 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.13 2.90 7.65 -2.91 -0.02 2.88 16 Total: -1.00 -80.42 327.18 2.74 -77.68 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -0.85 Total: 2.40 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 3.91 Total: -1.45 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -0.61 Total: -70.90 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -1.73 Total: -55.20 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -80.42 2.74 -77.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.456 kcal (2) G-P(sol) polarization free energy of solvation -80.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.67 seconds