Wall clock time and date at job start Tue Mar 31 2020 08:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86807 * 120.00146 * 2 1 4 4 H 1.48497 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46868 * 300.00357 * 3 2 1 6 6 H 1.48502 * 109.47003 * 60.00239 * 3 2 1 7 7 C 1.37881 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00643 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99265 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46478 * 180.02562 * 9 7 2 11 11 C 1.42902 * 113.99530 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46907 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47126 * 65.00117 * 12 11 10 14 14 C 1.34774 * 117.00041 * 179.97438 * 13 12 11 15 15 O 1.21523 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.47322 * 120.00011 * 179.97438 * 14 13 12 17 17 C 1.39069 * 120.30343 * 0.02562 * 16 14 13 18 18 C 1.38480 * 120.36210 * 180.02562 * 17 16 14 19 19 C 1.37837 * 120.79702 * 359.97438 * 18 17 16 20 20 C 1.39215 * 120.21233 * 359.97271 * 19 18 17 21 21 N 1.37220 * 133.64651 * 179.70506 * 20 19 18 22 22 H 0.97000 * 125.98718 * 0.02589 * 21 20 19 23 23 N 1.40034 * 108.03145 * 179.97438 * 21 20 19 24 24 C 1.30279 * 109.69860 * 0.36616 * 23 21 20 25 25 C 1.40682 * 119.79452 * 0.02562 * 20 19 18 26 26 H 0.97000 * 120.00462 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47012 * 60.00021 * 9 7 2 28 28 H 1.08995 * 109.47085 * 299.99764 * 9 7 2 29 29 H 1.09001 * 109.47232 * 59.99537 * 11 10 9 30 30 H 1.08995 * 109.47300 * 299.99552 * 11 10 9 31 31 H 1.08999 * 109.47164 * 304.99601 * 12 11 10 32 32 H 1.09007 * 109.47092 * 184.99645 * 12 11 10 33 33 H 1.08001 * 119.81478 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.59877 * 179.97438 * 18 17 16 35 35 H 1.07999 * 119.89777 * 179.97438 * 19 18 17 36 36 H 1.07992 * 125.64733 * 179.80431 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6481 -5.9562 -0.0017 13 8 3.3994 -5.8892 1.2390 14 6 4.3975 -6.7806 1.3988 15 8 4.6338 -7.5914 0.5250 16 6 5.2029 -6.7713 2.6323 17 6 4.9384 -5.8460 3.6362 18 6 5.6950 -5.8359 4.7960 19 6 6.7202 -6.7391 4.9776 20 6 7.0091 -7.6786 3.9917 21 7 7.9435 -8.6772 3.8797 22 1 8.6162 -8.9050 4.5404 23 7 7.7552 -9.3106 2.6451 24 6 6.7690 -8.7461 2.0079 25 6 6.2511 -7.7040 2.8068 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 0.9451 -4.9821 -0.8913 30 1 0.9447 -4.9827 0.8886 31 1 3.3215 -5.7952 -0.8435 32 1 2.1820 -6.9375 -0.0917 33 1 4.1390 -5.1308 3.5102 34 1 5.4791 -5.1115 5.5674 35 1 7.3013 -6.7179 5.8877 36 1 6.4070 -9.0292 1.0306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815238619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:04 Heat of formation + Delta-G solvation = -44.298662 kcal Electronic energy + Delta-G solvation = -21694.489060 eV Core-core repulsion = 18145.464639 eV Total energy + Delta-G solvation = -3549.024422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.80135 -40.11085 -37.37590 -36.96538 -35.99783 -32.91065 -32.75798 -30.63196 -30.13547 -29.56052 -26.94974 -24.79569 -22.78243 -22.61967 -22.28458 -21.72115 -21.04205 -18.43099 -17.57464 -16.81471 -16.50456 -16.47460 -15.93500 -15.41351 -15.28093 -15.05329 -14.86422 -14.59078 -14.32961 -13.79817 -13.54719 -12.99285 -12.74637 -12.20279 -12.05649 -12.01514 -11.90891 -11.44107 -11.22380 -10.93041 -10.88397 -10.75160 -10.62172 -10.41618 -10.36110 -10.05194 -9.12265 -8.99367 -8.89077 -8.38625 -8.22478 -6.13002 -4.14543 0.13030 1.10343 2.21251 2.38932 2.50715 2.70024 3.28363 3.35027 3.41662 3.56935 4.29368 4.32059 4.44326 4.53513 4.68427 4.74014 4.81497 4.94253 5.22495 5.23826 5.35696 5.42451 5.46905 5.58329 5.85868 5.89949 5.99132 6.03046 6.07306 6.16685 6.43246 6.55033 6.93564 7.04548 7.25847 7.38845 7.77420 7.81014 8.11597 8.51401 8.98657 9.50420 10.98589 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.003152 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.992403 B = 8882.197550 C = 9700.259011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.068 0.932 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.334 6.334 14 C 0.508 3.492 15 O -0.510 6.510 16 C -0.050 4.050 17 C -0.083 4.083 18 C -0.081 4.081 19 C -0.109 4.109 20 C 0.114 3.886 21 N -0.508 5.508 22 H 0.442 0.558 23 N -0.250 5.250 24 C 0.086 3.914 25 C -0.128 4.128 26 H 0.264 0.736 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.149 -16.134 10.122 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.250 6.250 14 C 0.353 3.647 15 O -0.400 6.400 16 C -0.054 4.054 17 C -0.103 4.103 18 C -0.102 4.102 19 C -0.131 4.131 20 C -0.003 4.003 21 N -0.223 5.223 22 H 0.287 0.713 23 N -0.065 5.065 24 C -0.109 4.109 25 C -0.137 4.137 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 12.145 -17.149 9.781 23.179 hybrid contribution -0.269 1.330 0.237 1.377 sum 11.877 -15.819 10.018 22.173 Atomic orbital electron populations 1.69962 1.06109 1.27098 1.50631 1.24947 0.94973 0.99453 0.95128 0.86286 0.80065 0.82559 0.77628 1.19440 1.20857 1.20814 1.21092 0.94152 0.89272 1.50708 0.91427 1.20242 0.88745 0.83513 0.95516 1.87923 1.35294 1.12601 1.95231 1.22331 0.93228 0.85448 1.00640 1.23261 0.93615 0.98909 0.84017 1.86649 1.43119 1.53467 1.41733 1.20969 0.78928 0.78377 0.86470 1.90774 1.68062 1.38140 1.43023 1.18590 0.95755 0.97706 0.93353 1.21550 0.99589 0.97093 0.92025 1.21055 0.93897 0.97665 0.97584 1.20329 0.99777 0.95031 0.97940 1.18743 0.92359 0.92884 0.96307 1.46089 1.30735 1.28440 1.17054 0.71288 1.76804 1.18271 1.18682 0.92730 1.24203 0.92928 0.93249 1.00553 1.18633 0.99386 1.00100 0.95547 0.92682 0.97611 0.97476 0.91862 0.93130 0.90290 0.90236 0.83067 0.83937 0.84958 0.78000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.28 55.43 0.74 -25.80 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.97 9.43 -34.43 -0.32 -15.29 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.21 5.69 36.01 0.20 5.42 16 10 O -0.39 -9.26 10.30 -38.80 -0.40 -9.65 16 11 C 0.06 1.08 6.33 37.16 0.24 1.32 16 12 C 0.08 1.16 5.86 37.16 0.22 1.38 16 13 O -0.33 -5.42 9.43 -43.48 -0.41 -5.83 16 14 C 0.51 7.70 7.89 34.43 0.27 7.97 16 15 O -0.51 -8.21 14.73 -19.28 -0.28 -8.49 16 16 C -0.05 -0.66 5.90 -104.70 -0.62 -1.28 16 17 C -0.08 -0.93 9.60 -39.18 -0.38 -1.31 16 18 C -0.08 -0.70 9.99 -39.64 -0.40 -1.09 16 19 C -0.11 -0.88 10.06 -39.37 -0.40 -1.28 16 20 C 0.11 1.19 7.32 -84.17 -0.62 0.57 16 21 N -0.51 -4.81 7.45 32.35 0.24 -4.57 16 22 H 0.44 2.60 8.96 -182.65 -1.64 0.97 16 23 N -0.25 -2.97 12.58 30.80 0.39 -2.58 16 24 C 0.09 1.06 11.23 -17.10 -0.19 0.87 16 25 C -0.13 -1.63 6.00 -106.67 -0.64 -2.26 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.15 1.72 7.59 -52.49 -0.40 1.32 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.20 2.35 6.95 -52.49 -0.36 1.99 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -33.99 323.97 -7.92 -41.91 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -5.33 Total: -2.95 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.73 Total: -3.48 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 1.36 Total: -32.95 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.09 Total: -23.98 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.99 -7.92 -41.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.384 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds