Wall clock time and date at job start Tue Mar 31 2020 08:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86807 * 120.00146 * 2 1 4 4 H 1.48497 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46868 * 300.00357 * 3 2 1 6 6 H 1.48502 * 109.47003 * 60.00239 * 3 2 1 7 7 C 1.37881 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00643 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99265 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46478 * 180.02562 * 9 7 2 11 11 C 1.42902 * 113.99530 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46907 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47126 * 65.00117 * 12 11 10 14 14 C 1.34774 * 117.00041 * 179.97438 * 13 12 11 15 15 O 1.21523 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.47322 * 120.00011 * 179.97438 * 14 13 12 17 17 C 1.39069 * 120.30343 * 0.02562 * 16 14 13 18 18 C 1.38480 * 120.36210 * 180.02562 * 17 16 14 19 19 C 1.37837 * 120.79702 * 359.97438 * 18 17 16 20 20 C 1.39215 * 120.21233 * 359.97271 * 19 18 17 21 21 N 1.37220 * 133.64651 * 179.70506 * 20 19 18 22 22 H 0.97000 * 125.98718 * 0.02589 * 21 20 19 23 23 N 1.40034 * 108.03145 * 179.97438 * 21 20 19 24 24 C 1.30279 * 109.69860 * 0.36616 * 23 21 20 25 25 C 1.40682 * 119.79452 * 0.02562 * 20 19 18 26 26 H 0.97000 * 120.00462 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47012 * 60.00021 * 9 7 2 28 28 H 1.08995 * 109.47085 * 299.99764 * 9 7 2 29 29 H 1.09001 * 109.47232 * 59.99537 * 11 10 9 30 30 H 1.08995 * 109.47300 * 299.99552 * 11 10 9 31 31 H 1.08999 * 109.47164 * 304.99601 * 12 11 10 32 32 H 1.09007 * 109.47092 * 184.99645 * 12 11 10 33 33 H 1.08001 * 119.81478 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.59877 * 179.97438 * 18 17 16 35 35 H 1.07999 * 119.89777 * 179.97438 * 19 18 17 36 36 H 1.07992 * 125.64733 * 179.80431 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6481 -5.9562 -0.0017 13 8 3.3994 -5.8892 1.2390 14 6 4.3975 -6.7806 1.3988 15 8 4.6338 -7.5914 0.5250 16 6 5.2029 -6.7713 2.6323 17 6 4.9384 -5.8460 3.6362 18 6 5.6950 -5.8359 4.7960 19 6 6.7202 -6.7391 4.9776 20 6 7.0091 -7.6786 3.9917 21 7 7.9435 -8.6772 3.8797 22 1 8.6162 -8.9050 4.5404 23 7 7.7552 -9.3106 2.6451 24 6 6.7690 -8.7461 2.0079 25 6 6.2511 -7.7040 2.8068 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 0.9451 -4.9821 -0.8913 30 1 0.9447 -4.9827 0.8886 31 1 3.3215 -5.7952 -0.8435 32 1 2.1820 -6.9375 -0.0917 33 1 4.1390 -5.1308 3.5102 34 1 5.4791 -5.1115 5.5674 35 1 7.3013 -6.7179 5.8877 36 1 6.4070 -9.0292 1.0306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815238619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:03 Heat of formation + Delta-G solvation = -66.625826 kcal Electronic energy + Delta-G solvation = -21695.457239 eV Core-core repulsion = 18145.464639 eV Total energy + Delta-G solvation = -3549.992600 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.64909 -41.27214 -38.75182 -38.06723 -37.37711 -34.92671 -33.73723 -31.86690 -31.04647 -30.61155 -28.98238 -25.79322 -24.53234 -23.69470 -23.58308 -22.74513 -22.07337 -19.42487 -18.72470 -18.48610 -17.89133 -17.71080 -17.06972 -16.98643 -16.40020 -16.18217 -16.00742 -15.91580 -15.69335 -15.17739 -14.60203 -14.36999 -14.18853 -13.73308 -13.23633 -12.95698 -12.92803 -12.83591 -12.80631 -12.70108 -12.41965 -12.10195 -11.98349 -11.71607 -11.50634 -11.46222 -11.24095 -10.88040 -10.24644 -9.80656 -9.19120 -8.30544 -6.42319 -0.74191 0.29499 1.23893 1.42421 1.43347 1.54317 1.58128 1.58309 1.69135 2.36404 2.70244 3.03608 3.08888 3.42011 3.58337 3.73504 3.88651 3.95172 3.98766 4.14041 4.25563 4.41384 4.47267 4.57214 4.62312 4.75783 4.83897 4.88515 5.16176 5.20104 5.24186 5.29250 5.41732 5.56882 5.65924 5.97467 6.23917 6.47890 6.52011 6.65199 6.82348 7.29384 8.81831 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.003152 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.992403 B = 8882.197550 C = 9700.259011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.079 3.921 13 O -0.349 6.349 14 C 0.505 3.495 15 O -0.528 6.528 16 C -0.080 4.080 17 C -0.082 4.082 18 C -0.080 4.080 19 C -0.086 4.086 20 C 0.109 3.891 21 N -0.492 5.492 22 H 0.458 0.542 23 N -0.262 5.262 24 C 0.069 3.931 25 C -0.152 4.152 26 H 0.271 0.729 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.144 0.856 34 H 0.177 0.823 35 H 0.176 0.824 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.486 -15.475 12.090 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.005 3.995 13 O -0.265 6.265 14 C 0.352 3.648 15 O -0.419 6.419 16 C -0.084 4.084 17 C -0.101 4.101 18 C -0.100 4.100 19 C -0.107 4.107 20 C -0.009 4.009 21 N -0.210 5.210 22 H 0.307 0.693 23 N -0.078 5.078 24 C -0.125 4.125 25 C -0.160 4.160 26 H 0.080 0.920 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.162 0.838 34 H 0.195 0.805 35 H 0.193 0.807 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 13.491 -16.522 11.759 24.357 hybrid contribution -0.674 1.042 -0.292 1.275 sum 12.818 -15.479 11.467 23.139 Atomic orbital electron populations 1.70057 1.07663 1.28599 1.50549 1.25919 0.95947 1.03258 0.93944 0.85161 0.78651 0.77454 0.78295 1.18964 1.19802 1.19482 1.21414 0.94077 0.90917 1.52170 0.92192 1.19873 0.88551 0.84360 0.93923 1.87869 1.35498 1.14183 1.95338 1.22648 0.94401 0.83262 1.01954 1.23241 0.93083 0.99350 0.83785 1.86635 1.43751 1.54211 1.41914 1.21411 0.78545 0.77710 0.87131 1.90748 1.68538 1.38801 1.43857 1.18569 0.96858 0.99696 0.93325 1.21692 0.99641 0.96163 0.92645 1.21435 0.93209 0.98288 0.97109 1.20822 0.98856 0.92748 0.98288 1.19022 0.92157 0.93502 0.96215 1.46085 1.30665 1.27684 1.16551 0.69321 1.76730 1.18183 1.19149 0.93752 1.24183 0.93558 0.93912 1.00843 1.18807 1.00012 1.00387 0.96803 0.92016 0.99104 0.99082 0.89975 0.92310 0.90937 0.87163 0.83774 0.80518 0.80679 0.78488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 13.28 21.45 0.28 -54.77 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.98 43.89 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.55 -32.44 9.43 25.60 0.24 -32.20 16 8 H 0.06 3.55 7.81 -2.92 -0.02 3.52 16 9 C 0.21 11.49 5.69 71.24 0.41 11.89 16 10 O -0.41 -19.83 10.30 -145.57 -1.50 -21.33 16 11 C 0.05 1.93 6.33 71.98 0.46 2.38 16 12 C 0.08 2.44 5.86 71.98 0.42 2.86 16 13 O -0.35 -11.61 9.43 -54.19 -0.51 -12.12 16 14 C 0.51 15.85 7.89 70.21 0.55 16.41 16 15 O -0.53 -17.67 14.73 19.76 0.29 -17.38 16 16 C -0.08 -2.15 5.90 -19.91 -0.12 -2.26 16 17 C -0.08 -1.77 9.60 22.53 0.22 -1.56 16 18 C -0.08 -1.12 9.99 22.23 0.22 -0.90 16 19 C -0.09 -1.07 10.06 22.41 0.23 -0.84 16 20 C 0.11 2.04 7.32 39.13 0.29 2.33 16 21 N -0.49 -8.39 7.45 -51.56 -0.38 -8.78 16 22 H 0.46 4.20 8.96 -213.36 -1.91 2.29 16 23 N -0.26 -6.11 12.58 -56.46 -0.71 -6.82 16 24 C 0.07 1.76 11.23 85.64 0.96 2.72 16 25 C -0.15 -3.82 6.00 -21.19 -0.13 -3.94 16 26 H 0.27 14.82 8.31 -92.71 -0.77 14.04 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.14 3.27 7.59 -2.91 -0.02 3.25 16 34 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 36 H 0.20 4.95 6.95 -2.91 -0.02 4.93 16 Total: -1.00 -74.52 323.97 2.91 -71.60 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -0.79 Total: 5.89 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 4.21 Total: -2.21 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -0.81 Total: -70.37 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -1.72 Total: -50.82 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -74.52 2.91 -71.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.976 kcal (2) G-P(sol) polarization free energy of solvation -74.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds