Wall clock time and date at job start Tue Mar 31 2020 06:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.47008 * 179.97438 * 10 9 7 12 12 C 1.34235 * 116.99405 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99978 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99744 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47248 * 179.97438 * 14 12 11 16 16 H 1.08995 * 109.38265 * 304.78699 * 15 14 12 17 17 C 1.52585 * 109.38313 * 184.99726 * 15 14 12 18 18 C 1.52593 * 110.63873 * 169.85707 * 17 15 14 19 19 C 1.53033 * 109.98875 * 69.98534 * 18 17 15 20 20 S 1.81666 * 109.00071 * 296.35527 * 19 18 17 21 21 O 1.42097 * 108.66668 * 168.62683 * 20 19 18 22 22 O 1.42108 * 108.65735 * 299.87033 * 20 19 18 23 23 C 1.53042 * 109.38280 * 64.47249 * 15 14 12 24 24 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 26 26 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 27 27 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 28 28 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 29 29 H 1.08998 * 109.47040 * 300.00119 * 14 12 11 30 30 H 1.09001 * 109.47517 * 59.99655 * 14 12 11 31 31 H 1.08992 * 109.24630 * 290.15142 * 17 15 14 32 32 H 1.08995 * 109.24665 * 49.56012 * 17 15 14 33 33 H 1.09001 * 109.38260 * 190.14575 * 18 17 15 34 34 H 1.09000 * 109.38388 * 309.82598 * 18 17 15 35 35 H 1.09005 * 109.54405 * 56.20697 * 19 18 17 36 36 H 1.09004 * 109.55106 * 176.39576 * 19 18 17 37 37 H 1.08990 * 109.54865 * 303.66258 * 23 15 14 38 38 H 1.08999 * 109.54844 * 63.95570 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 8 1.5193 -4.9195 0.0024 12 6 2.2505 -6.0452 0.0030 13 8 3.4570 -5.9819 0.0026 14 6 1.5663 -7.3880 0.0031 15 6 2.6201 -8.4973 0.0032 16 1 3.2945 -8.3556 -0.8412 17 6 1.9293 -9.8520 -0.1221 18 6 2.9518 -10.9558 -0.3761 19 6 3.7924 -11.1895 0.8812 20 16 4.7408 -9.6839 1.2471 21 8 5.3078 -9.8075 2.5441 22 8 5.5879 -9.4004 0.1419 23 6 3.4209 -8.4370 1.3060 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8896 27 1 2.8727 -3.6047 -0.8877 28 1 2.8713 -3.6038 0.8923 29 1 0.9432 -7.4782 0.8928 30 1 0.9439 -7.4788 -0.8871 31 1 1.3903 -10.0671 0.8005 32 1 1.2224 -9.8195 -0.9511 33 1 2.4320 -11.8767 -0.6402 34 1 3.6045 -10.6621 -1.1982 35 1 3.1364 -11.4204 1.7207 36 1 4.4764 -12.0215 0.7132 37 1 3.8602 -7.4459 1.4185 38 1 2.7618 -8.6432 2.1492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815287968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:17 Heat of formation + Delta-G solvation = -185.777984 kcal Electronic energy + Delta-G solvation = -21177.045827 eV Core-core repulsion = 17725.037601 eV Total energy + Delta-G solvation = -3452.008225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.37669 -38.16091 -37.08129 -36.23671 -36.16783 -33.73971 -33.26527 -30.29719 -28.74652 -27.97006 -24.68203 -23.39465 -21.67014 -21.09024 -20.31565 -19.11027 -17.54892 -17.08920 -16.88037 -16.53879 -16.21189 -16.08549 -15.81375 -15.55549 -14.43894 -14.10432 -13.90014 -13.76562 -13.44243 -13.37900 -12.92094 -12.63015 -12.31791 -12.21240 -12.01719 -11.83565 -11.78243 -11.76934 -11.70184 -11.31709 -11.24910 -10.90559 -10.73018 -10.52231 -10.27952 -10.15824 -9.92146 -9.81593 -8.77439 -8.44016 -6.49353 -4.20496 -0.23368 2.37849 2.44332 2.97834 3.40739 3.42071 3.42203 3.59699 3.60952 4.06563 4.10641 4.27391 4.31786 4.41665 4.47478 4.68340 4.82937 4.99389 5.03602 5.08576 5.20301 5.29463 5.31675 5.37554 5.41315 5.47831 5.67068 5.77614 5.92069 5.93417 6.43785 6.80543 7.24331 7.28324 7.94951 8.07906 8.31287 8.73092 9.52107 10.92082 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.034162 B = 0.002932 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.418849 B = 9547.808480 C =10064.688933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 1.073 2.927 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.609 4.609 8 H 0.053 0.947 9 C 0.012 3.988 10 C 0.081 3.919 11 O -0.360 6.360 12 C 0.452 3.548 13 O -0.515 6.515 14 C -0.106 4.106 15 C -0.066 4.066 16 H 0.103 0.897 17 C -0.137 4.137 18 C -0.109 4.109 19 C -0.608 4.608 20 S 2.418 3.582 21 O -0.946 6.946 22 O -0.932 6.932 23 C -0.608 4.608 24 H 0.270 0.730 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -25.192 0.567 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.900 3.100 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.206 1.206 7 C -0.647 4.647 8 H 0.072 0.928 9 C -0.025 4.025 10 C 0.008 3.992 11 O -0.276 6.276 12 C 0.296 3.704 13 O -0.404 6.404 14 C -0.145 4.145 15 C -0.086 4.086 16 H 0.121 0.879 17 C -0.174 4.174 18 C -0.147 4.147 19 C -0.737 4.737 20 S 2.601 3.399 21 O -0.943 6.943 22 O -0.929 6.929 23 C -0.737 4.737 24 H 0.081 0.919 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.884 -23.382 0.707 23.570 hybrid contribution -0.500 -1.741 0.065 1.812 sum 2.384 -25.123 0.771 25.247 Atomic orbital electron populations 1.70783 1.06878 1.30793 1.45749 1.25910 0.96474 1.02762 0.93328 0.83484 0.74851 0.74898 0.76729 1.21242 1.21246 1.20588 1.21831 0.94511 0.91133 1.57193 0.92846 1.19295 0.94845 0.90835 0.97544 1.23486 0.95987 0.78389 1.01300 1.86512 1.42580 1.15974 1.82529 1.23540 0.86681 0.87449 0.72756 1.90613 1.15803 1.88213 1.45815 1.21386 0.98629 0.88092 1.06376 1.20749 0.96915 0.94493 0.96399 0.87883 1.21789 0.98774 0.92396 1.04433 1.21252 0.97710 1.00547 0.95192 1.30294 1.14068 1.21532 1.07817 1.08032 0.77828 0.78845 0.75241 1.93590 1.75137 1.85732 1.39887 1.93603 1.62130 1.83206 1.53950 1.30464 1.17639 1.20028 1.05548 0.91928 0.96294 0.96258 0.91984 0.92078 0.87350 0.86984 0.90258 0.89130 0.89355 0.89530 0.84970 0.84956 0.82994 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.45 13.65 55.43 0.76 -26.69 16 2 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 3 Si 1.07 25.02 29.90 -169.99 -5.08 19.94 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.61 -17.31 9.11 -34.44 -0.31 -17.63 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.01 0.31 4.66 -27.88 -0.13 0.18 16 10 C 0.08 1.78 5.40 37.16 0.20 1.98 16 11 O -0.36 -6.78 10.22 -39.27 -0.40 -7.18 16 12 C 0.45 7.04 7.64 36.00 0.28 7.32 16 13 O -0.51 -9.32 13.69 -18.75 -0.26 -9.58 16 14 C -0.11 -0.99 5.27 -27.88 -0.15 -1.14 16 15 C -0.07 -0.54 1.67 -90.81 -0.15 -0.69 16 16 H 0.10 0.97 7.83 -51.93 -0.41 0.56 16 17 C -0.14 -0.62 4.93 -27.15 -0.13 -0.75 16 18 C -0.11 -0.49 5.73 -26.92 -0.15 -0.65 16 19 C -0.61 -3.03 6.35 37.17 0.24 -2.80 16 20 S 2.42 22.77 5.30 -107.50 -0.57 22.20 16 21 O -0.95 -12.30 18.10 -57.82 -1.05 -13.35 16 22 O -0.93 -12.51 17.95 -57.82 -1.04 -13.55 16 23 C -0.61 -5.38 5.39 37.18 0.20 -5.18 16 24 H 0.27 8.12 7.22 -40.82 -0.29 7.82 16 25 H 0.02 0.50 8.01 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.01 -51.93 -0.42 0.10 16 27 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 28 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 29 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.11 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 32 H 0.09 0.30 8.06 -51.93 -0.42 -0.12 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.45 8.02 -51.93 -0.42 0.03 16 35 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.15 1.80 5.85 -51.93 -0.30 1.49 16 38 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -37.90 325.67 -8.62 -46.52 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -5.67 Total: -4.34 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -0.22 Total: -18.88 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.76 Total: -26.69 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -2.74 Total: -43.65 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Atomic # 16 Polarization: 22.77 SS G_CDS: -0.57 Total: 22.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.90 -8.62 -46.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815287968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.253 kcal (2) G-P(sol) polarization free energy of solvation -37.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds