Wall clock time and date at job start Tue Mar 31 2020 06:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47149 * 180.02562 * 10 9 7 12 12 C 1.34233 * 117.00244 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99569 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99946 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.46542 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.38880 * 304.78643 * 15 14 12 17 17 C 1.52596 * 109.38837 * 64.48001 * 15 14 12 18 18 C 1.52581 * 110.64280 * 190.14332 * 17 15 14 19 19 C 1.53043 * 109.98683 * 290.00740 * 18 17 15 20 20 S 1.81676 * 108.99573 * 63.64970 * 19 18 17 21 21 O 1.42098 * 108.65889 * 191.37299 * 20 19 18 22 22 O 1.42097 * 108.65976 * 60.03350 * 20 19 18 23 23 C 1.53036 * 109.38211 * 184.99928 * 15 14 12 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.08997 * 109.46901 * 299.99656 * 14 12 11 30 30 H 1.08997 * 109.47070 * 60.00537 * 14 12 11 31 31 H 1.09004 * 109.23573 * 310.44012 * 17 15 14 32 32 H 1.08996 * 109.23933 * 69.83558 * 17 15 14 33 33 H 1.09003 * 109.38420 * 169.85691 * 18 17 15 34 34 H 1.08993 * 109.38888 * 50.16917 * 18 17 15 35 35 H 1.09001 * 109.54648 * 303.79964 * 19 18 17 36 36 H 1.08993 * 109.62793 * 183.55546 * 19 18 17 37 37 H 1.09002 * 109.55239 * 296.04957 * 23 15 14 38 38 H 1.09003 * 109.55205 * 56.24178 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2505 -6.0453 0.0004 13 8 3.4570 -5.9820 0.0017 14 6 1.5663 -7.3880 0.0004 15 6 2.6201 -8.4972 0.0016 16 1 3.2952 -8.3559 -0.8424 17 6 3.4176 -8.4369 1.3011 18 6 4.6311 -9.3591 1.2309 19 6 4.1789 -10.8211 1.2521 20 16 3.1913 -11.1563 -0.2354 21 8 2.5584 -12.4197 -0.0858 22 8 3.9963 -10.9111 -1.3804 23 6 1.9273 -9.8560 -0.1242 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8906 29 1 0.9432 -7.4783 0.8902 30 1 0.9439 -7.4786 -0.8898 31 1 3.7533 -7.4135 1.4692 32 1 2.7792 -8.7453 2.1290 33 1 5.2801 -9.1688 2.0857 34 1 5.1811 -9.1639 0.3104 35 1 3.5738 -11.0028 2.1403 36 1 5.0515 -11.4740 1.2654 37 1 1.3020 -10.0292 0.7517 38 1 1.3092 -9.8686 -1.0219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815287977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:22 Heat of formation + Delta-G solvation = -185.582060 kcal Electronic energy + Delta-G solvation = -21058.578470 eV Core-core repulsion = 17606.578741 eV Total energy + Delta-G solvation = -3451.999729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.41303 -38.13046 -37.20987 -36.36618 -36.08957 -33.76096 -33.35392 -30.32718 -28.90131 -27.80485 -24.66982 -23.22337 -21.82072 -21.15651 -20.26933 -19.21980 -17.69483 -17.09175 -16.79906 -16.56913 -16.36368 -16.02945 -15.93765 -15.18392 -14.88245 -14.06232 -13.79290 -13.70456 -13.42401 -13.37462 -13.17021 -12.64085 -12.42728 -12.35131 -12.10857 -11.92448 -11.73698 -11.68575 -11.53517 -11.33664 -11.17602 -11.04566 -10.73722 -10.47049 -10.30254 -10.17718 -9.93617 -9.82963 -8.78934 -8.45528 -6.50705 -4.22050 -0.35308 2.26472 2.38266 2.96542 3.28508 3.38960 3.40346 3.57626 3.59398 4.04485 4.08565 4.25845 4.34317 4.43165 4.46260 4.63337 4.87143 4.97663 5.08610 5.10070 5.15546 5.26259 5.28054 5.40602 5.51260 5.62388 5.84775 5.86533 5.90375 5.95647 6.42084 6.79466 7.23047 7.26996 7.93400 8.06583 8.29535 8.71566 9.50698 10.90729 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.048302 B = 0.002646 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.546167 B =10580.918230 C =10823.169718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 1.073 2.927 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.609 4.609 8 H 0.053 0.947 9 C 0.011 3.989 10 C 0.082 3.918 11 O -0.360 6.360 12 C 0.454 3.546 13 O -0.513 6.513 14 C -0.107 4.107 15 C -0.067 4.067 16 H 0.103 0.897 17 C -0.147 4.147 18 C -0.106 4.106 19 C -0.603 4.603 20 S 2.418 3.582 21 O -0.946 6.946 22 O -0.935 6.935 23 C -0.602 4.602 24 H 0.271 0.729 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -22.444 3.429 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.900 3.100 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.647 4.647 8 H 0.071 0.929 9 C -0.026 4.026 10 C 0.010 3.990 11 O -0.276 6.276 12 C 0.297 3.703 13 O -0.403 6.403 14 C -0.146 4.146 15 C -0.086 4.086 16 H 0.122 0.878 17 C -0.184 4.184 18 C -0.145 4.145 19 C -0.732 4.732 20 S 2.600 3.400 21 O -0.943 6.943 22 O -0.932 6.932 23 C -0.731 4.731 24 H 0.081 0.919 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.071 -21.411 2.779 22.178 hybrid contribution 0.106 -1.138 0.654 1.316 sum 5.177 -22.548 3.433 23.388 Atomic orbital electron populations 1.70783 1.06882 1.30817 1.45696 1.25908 0.96477 1.02762 0.93343 0.83485 0.74858 0.74928 0.76701 1.20579 1.21263 1.21246 1.21826 0.94477 0.91129 1.57233 0.92867 1.19300 0.94866 0.90846 0.97559 1.23469 0.95959 0.78384 1.01235 1.86514 1.42614 1.15970 1.82535 1.23471 0.86655 0.87342 0.72815 1.90614 1.15690 1.88231 1.45746 1.21381 0.98725 0.88080 1.06401 1.20727 0.96505 0.90272 1.01082 0.87843 1.21966 0.96440 1.03535 0.96465 1.21231 0.98916 0.88907 1.05417 1.30246 1.15264 1.06562 1.21143 1.08007 0.77850 0.76377 0.77749 1.93598 1.75921 1.37813 1.86952 1.93606 1.67610 1.86010 1.45949 1.30364 1.17202 1.13288 1.12251 0.91905 0.96285 0.96266 0.92038 0.92079 0.87351 0.87255 0.87730 0.90894 0.89380 0.89459 0.84939 0.84883 0.84481 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.27 13.65 55.43 0.76 -26.51 16 2 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 3 Si 1.07 24.73 29.90 -169.99 -5.08 19.64 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.61 -17.09 9.11 -34.44 -0.31 -17.41 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.01 0.29 4.66 -27.88 -0.13 0.16 16 10 C 0.08 1.76 5.40 37.16 0.20 1.96 16 11 O -0.36 -6.66 10.22 -39.27 -0.40 -7.06 16 12 C 0.45 6.85 7.58 36.01 0.27 7.12 16 13 O -0.51 -8.76 13.74 -18.75 -0.26 -9.02 16 14 C -0.11 -1.02 5.28 -27.88 -0.15 -1.17 16 15 C -0.07 -0.55 1.68 -90.81 -0.15 -0.70 16 16 H 0.10 0.99 7.82 -51.93 -0.41 0.58 16 17 C -0.15 -1.16 4.72 -27.15 -0.13 -1.28 16 18 C -0.11 -0.73 5.73 -26.92 -0.15 -0.88 16 19 C -0.60 -3.18 6.35 37.18 0.24 -2.94 16 20 S 2.42 18.32 5.31 -107.50 -0.57 17.74 16 21 O -0.95 -10.20 18.10 -57.81 -1.05 -11.25 16 22 O -0.93 -10.77 17.94 -57.81 -1.04 -11.80 16 23 C -0.60 -3.43 5.62 37.18 0.21 -3.22 16 24 H 0.27 8.08 7.22 -40.82 -0.29 7.78 16 25 H 0.02 0.50 8.01 -51.93 -0.42 0.08 16 26 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 27 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 28 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 29 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.10 5.75 -51.93 -0.30 0.80 16 32 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.67 8.01 -51.93 -0.42 0.25 16 35 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -36.78 325.70 -8.61 -45.39 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.67 Total: -4.16 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -0.20 Total: -17.89 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.76 Total: -26.51 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -2.74 Total: -39.13 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.64 kcal Atomic # 16 Polarization: 18.32 SS G_CDS: -0.57 Total: 17.74 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.78 -8.61 -45.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815287977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.192 kcal (2) G-P(sol) polarization free energy of solvation -36.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds