Wall clock time and date at job start Tue Mar 31 2020 06:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47149 * 180.02562 * 10 9 7 12 12 C 1.34233 * 117.00244 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99569 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99946 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.46542 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.38880 * 304.78643 * 15 14 12 17 17 C 1.52596 * 109.38837 * 64.48001 * 15 14 12 18 18 C 1.52581 * 110.64280 * 190.14332 * 17 15 14 19 19 C 1.53043 * 109.98683 * 290.00740 * 18 17 15 20 20 S 1.81676 * 108.99573 * 63.64970 * 19 18 17 21 21 O 1.42098 * 108.65889 * 191.37299 * 20 19 18 22 22 O 1.42097 * 108.65976 * 60.03350 * 20 19 18 23 23 C 1.53036 * 109.38211 * 184.99928 * 15 14 12 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.08997 * 109.46901 * 299.99656 * 14 12 11 30 30 H 1.08997 * 109.47070 * 60.00537 * 14 12 11 31 31 H 1.09004 * 109.23573 * 310.44012 * 17 15 14 32 32 H 1.08996 * 109.23933 * 69.83558 * 17 15 14 33 33 H 1.09003 * 109.38420 * 169.85691 * 18 17 15 34 34 H 1.08993 * 109.38888 * 50.16917 * 18 17 15 35 35 H 1.09001 * 109.54648 * 303.79964 * 19 18 17 36 36 H 1.08993 * 109.62793 * 183.55546 * 19 18 17 37 37 H 1.09002 * 109.55239 * 296.04957 * 23 15 14 38 38 H 1.09003 * 109.55205 * 56.24178 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2505 -6.0453 0.0004 13 8 3.4570 -5.9820 0.0017 14 6 1.5663 -7.3880 0.0004 15 6 2.6201 -8.4972 0.0016 16 1 3.2952 -8.3559 -0.8424 17 6 3.4176 -8.4369 1.3011 18 6 4.6311 -9.3591 1.2309 19 6 4.1789 -10.8211 1.2521 20 16 3.1913 -11.1563 -0.2354 21 8 2.5584 -12.4197 -0.0858 22 8 3.9963 -10.9111 -1.3804 23 6 1.9273 -9.8560 -0.1242 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8906 29 1 0.9432 -7.4783 0.8902 30 1 0.9439 -7.4786 -0.8898 31 1 3.7533 -7.4135 1.4692 32 1 2.7792 -8.7453 2.1290 33 1 5.2801 -9.1688 2.0857 34 1 5.1811 -9.1639 0.3104 35 1 3.5738 -11.0028 2.1403 36 1 5.0515 -11.4740 1.2654 37 1 1.3020 -10.0292 0.7517 38 1 1.3092 -9.8686 -1.0219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815287977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:21 Heat of formation + Delta-G solvation = -211.774637 kcal Electronic energy + Delta-G solvation = -21059.714265 eV Core-core repulsion = 17606.578741 eV Total energy + Delta-G solvation = -3453.135525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65230 -38.97018 -38.00481 -37.33547 -37.06871 -35.82457 -33.99314 -32.17234 -29.75290 -28.38917 -26.58130 -24.15143 -23.31927 -22.33232 -21.17756 -19.86063 -19.16897 -18.46480 -17.89749 -17.71463 -17.42762 -16.94246 -16.62072 -15.99508 -15.79305 -15.63040 -15.13316 -14.98868 -14.54448 -14.04626 -13.87530 -13.72014 -13.56387 -13.50579 -13.21864 -13.08208 -13.05345 -12.60506 -12.51414 -12.26172 -12.16301 -12.06744 -11.92393 -11.87652 -11.71227 -11.53128 -11.26094 -11.00421 -10.84648 -10.60917 -8.77998 -6.50622 -0.91235 1.18124 1.52827 1.61396 1.64163 1.81302 1.85260 2.54563 2.73027 2.97911 3.08740 3.38229 3.54778 3.70501 3.77382 3.89388 3.97563 4.07877 4.12709 4.18516 4.34679 4.39155 4.54323 4.58663 4.66828 4.70667 4.78714 4.94364 5.02444 5.08277 5.19573 5.26728 5.29734 5.60274 5.81773 6.06472 6.44928 6.72374 7.31623 8.64186 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.048302 B = 0.002646 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.546167 B =10580.918230 C =10823.169718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.031 4.031 3 Si 1.121 2.879 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.627 4.627 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.098 3.902 11 O -0.370 6.370 12 C 0.448 3.552 13 O -0.536 6.536 14 C -0.100 4.100 15 C -0.070 4.070 16 H 0.082 0.918 17 C -0.151 4.151 18 C -0.110 4.110 19 C -0.585 4.585 20 S 2.416 3.584 21 O -0.982 6.982 22 O -0.986 6.986 23 C -0.586 4.586 24 H 0.258 0.742 25 H 0.005 0.995 26 H 0.002 0.998 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.166 0.834 36 H 0.146 0.854 37 H 0.175 0.825 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.801 -23.283 4.727 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.230 4.230 3 Si 0.941 3.059 4 H -0.206 1.206 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.665 4.665 8 H 0.074 0.926 9 C -0.023 4.023 10 C 0.024 3.976 11 O -0.286 6.286 12 C 0.293 3.707 13 O -0.426 6.426 14 C -0.138 4.138 15 C -0.089 4.089 16 H 0.100 0.900 17 C -0.188 4.188 18 C -0.148 4.148 19 C -0.716 4.716 20 S 2.605 3.395 21 O -0.979 6.979 22 O -0.983 6.983 23 C -0.717 4.717 24 H 0.068 0.932 25 H 0.023 0.977 26 H 0.021 0.979 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.184 0.816 36 H 0.164 0.836 37 H 0.193 0.807 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.076 -22.320 4.050 23.245 hybrid contribution 0.121 -0.936 0.288 0.987 sum 5.197 -23.256 4.338 24.221 Atomic orbital electron populations 1.70910 1.07917 1.30167 1.47696 1.27496 0.96539 1.06759 0.92160 0.82893 0.74118 0.70705 0.78196 1.20594 1.19166 1.19351 1.22245 0.94930 0.92495 1.56783 0.92597 1.19148 0.95098 0.92108 0.95961 1.22907 0.94554 0.79179 1.00922 1.86507 1.42862 1.15913 1.83364 1.24673 0.86696 0.87870 0.71480 1.90615 1.16960 1.88396 1.46613 1.21616 0.99030 0.84230 1.08915 1.20719 0.96235 0.91196 1.00757 0.89971 1.21995 0.97292 1.02143 0.97335 1.21233 0.98763 0.89725 1.05097 1.30095 1.15698 1.05552 1.20292 1.07710 0.77900 0.76117 0.77795 1.93554 1.76674 1.40104 1.87536 1.93543 1.69069 1.86631 1.49081 1.30221 1.16543 1.09940 1.15002 0.93206 0.97680 0.97927 0.92537 0.92125 0.84121 0.85116 0.90681 0.87587 0.88212 0.91235 0.81632 0.83611 0.80672 0.82804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.65 21.45 0.29 -56.42 16 2 C -0.03 -1.78 5.46 84.65 0.46 -1.32 16 3 Si 1.12 49.02 29.90 68.60 2.05 51.07 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.63 -35.51 9.11 25.60 0.23 -35.28 16 8 H 0.06 3.07 7.74 -2.91 -0.02 3.04 16 9 C 0.01 0.73 4.66 29.85 0.14 0.87 16 10 C 0.10 4.25 5.40 71.98 0.39 4.64 16 11 O -0.37 -13.53 10.22 -51.44 -0.53 -14.06 16 12 C 0.45 13.06 7.58 71.24 0.54 13.60 16 13 O -0.54 -18.26 13.74 21.98 0.30 -17.96 16 14 C -0.10 -1.60 5.28 29.85 0.16 -1.45 16 15 C -0.07 -0.99 1.68 -10.92 -0.02 -1.01 16 16 H 0.08 1.53 7.82 -2.39 -0.02 1.51 16 17 C -0.15 -2.00 4.72 30.32 0.14 -1.86 16 18 C -0.11 -1.29 5.73 30.47 0.17 -1.12 16 19 C -0.58 -4.51 6.35 72.00 0.46 -4.05 16 20 S 2.42 33.16 5.31 -56.49 -0.30 32.86 16 21 O -0.98 -19.93 18.10 -127.40 -2.31 -22.23 16 22 O -0.99 -23.11 17.94 -127.40 -2.29 -25.40 16 23 C -0.59 -4.71 5.62 71.99 0.40 -4.31 16 24 H 0.26 15.88 7.22 -92.71 -0.67 15.21 16 25 H 0.00 0.27 8.01 -2.39 -0.02 0.25 16 26 H 0.00 0.13 8.01 -2.38 -0.02 0.11 16 27 H 0.06 2.48 8.13 -2.39 -0.02 2.46 16 28 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 29 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.49 5.75 -2.38 -0.01 1.48 16 32 H 0.11 0.69 8.09 -2.39 -0.02 0.67 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.06 8.01 -2.39 -0.02 1.04 16 35 H 0.17 0.24 8.14 -2.39 -0.02 0.23 16 36 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.18 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -82.29 325.70 1.46 -80.84 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.14 Total: 2.57 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.08 Total: -31.27 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.29 Total: -56.42 kcal Atomic # 8 Polarization: -74.83 SS G_CDS: -4.82 Total: -79.64 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.05 Total: 51.07 kcal Atomic # 16 Polarization: 33.16 SS G_CDS: -0.30 Total: 32.86 kcal Total: -82.29 1.46 -80.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815287977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.938 kcal (2) G-P(sol) polarization free energy of solvation -82.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds