Wall clock time and date at job start Tue Mar 31 2020 08:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47345 * 270.00160 * 3 2 1 5 5 H 1.48503 * 109.47223 * 30.00601 * 3 2 1 6 6 H 1.48506 * 109.47083 * 150.00044 * 3 2 1 7 7 C 1.37881 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99571 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46993 * 180.02562 * 9 7 2 11 11 C 1.34765 * 124.18545 * 89.97265 * 10 9 7 12 12 O 1.21235 * 127.15098 * 359.97438 * 11 10 9 13 13 C 1.51579 * 105.69206 * 180.02562 * 11 10 9 14 14 N 1.47312 * 103.59036 * 359.97438 * 13 11 10 15 15 C 1.46499 * 126.69197 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47453 * 90.00104 * 15 14 13 17 17 C 1.38163 * 120.02776 * 260.32685 * 16 15 14 18 18 C 1.38241 * 120.05692 * 180.29514 * 17 16 15 19 19 C 1.38292 * 120.10853 * 359.67667 * 18 17 16 20 20 C 1.38119 * 120.05538 * 359.97438 * 19 18 17 21 21 C 1.38712 * 120.02731 * 79.99657 * 16 15 14 22 22 O 1.35896 * 120.05761 * 0.02562 * 21 16 15 23 23 C 1.33800 * 124.17585 * 270.27282 * 10 9 7 24 24 O 1.21538 * 123.76801 * 359.97438 * 23 10 9 25 25 H 0.96998 * 120.00069 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47602 * 59.99589 * 9 7 2 27 27 H 1.09007 * 109.46886 * 299.99484 * 9 7 2 28 28 H 1.09003 * 110.60075 * 241.47505 * 13 11 10 29 29 H 1.08995 * 110.60329 * 118.52176 * 13 11 10 30 30 H 1.09005 * 109.47054 * 329.99818 * 15 14 13 31 31 H 1.09004 * 109.47005 * 210.00389 * 15 14 13 32 32 H 1.08004 * 119.97440 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.95005 * 179.69764 * 18 17 16 34 34 H 1.07997 * 119.97028 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.02891 * 180.02562 * 20 19 18 36 36 H 0.96700 * 114.00170 * 269.72567 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.6948 -4.1883 1.1135 12 8 2.4425 -3.8933 2.2620 13 6 3.6296 -5.2804 0.6329 14 7 3.5482 -5.1847 -0.8348 15 6 4.2612 -6.0167 -1.8072 16 6 3.4268 -7.2263 -2.1411 17 6 3.6960 -8.4399 -1.5380 18 6 2.9348 -9.5513 -1.8484 19 6 1.8980 -9.4501 -2.7579 20 6 1.6202 -8.2375 -3.3581 21 6 2.3834 -7.1207 -3.0490 22 8 2.1126 -5.9268 -3.6388 23 6 2.6964 -4.1799 -1.1083 24 8 2.4045 -3.8293 -2.2348 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6242 -2.5575 0.8881 28 1 3.2852 -6.2571 0.9728 29 1 4.6475 -5.0915 0.9739 30 1 5.2125 -6.3374 -1.3825 31 1 4.4442 -5.4399 -2.7139 32 1 4.5052 -8.5215 -0.8274 33 1 3.1500 -10.5002 -1.3797 34 1 1.3045 -10.3197 -2.9985 35 1 0.8101 -8.1588 -4.0680 36 1 1.4778 -5.3828 -3.1527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819169846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:40 Heat of formation + Delta-G solvation = -52.657534 kcal Electronic energy + Delta-G solvation = -23144.972932 eV Core-core repulsion = 19595.586042 eV Total energy + Delta-G solvation = -3549.386890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 10.59 seconds Orbital eigenvalues (eV) -41.69676 -39.80540 -37.91185 -36.48871 -35.71112 -34.91237 -32.97616 -31.71776 -29.96602 -28.48360 -27.12079 -25.79397 -23.29689 -22.64011 -22.10030 -21.26722 -19.53575 -18.14770 -17.21123 -16.90023 -16.31904 -16.18652 -15.76276 -15.72978 -15.16266 -14.87190 -14.59404 -14.15715 -14.03681 -13.69000 -13.50650 -13.38482 -12.89724 -12.40148 -12.30894 -12.11677 -12.01925 -11.58344 -11.49106 -11.14931 -10.77167 -10.47594 -10.38723 -10.04688 -9.91905 -9.58701 -9.05834 -8.95712 -8.59451 -8.54229 -8.53042 -6.16159 -4.21342 1.05501 1.19438 2.20000 2.68016 3.28937 3.33810 3.36507 3.47396 3.64010 3.70474 4.36244 4.37799 4.51043 4.63161 4.66858 4.89007 4.95541 5.17322 5.21282 5.23164 5.32024 5.37060 5.60163 5.78529 5.82553 6.00262 6.22709 6.31503 6.42915 6.54771 6.61359 6.75270 7.07348 7.17845 7.76750 7.87170 7.91681 8.00242 8.07841 8.66961 8.82856 9.43802 10.93228 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.025220 B = 0.004458 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.964826 B = 6278.919431 C = 6735.164017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.249 3.751 10 N -0.557 5.557 11 C 0.517 3.483 12 O -0.477 6.477 13 C 0.061 3.939 14 N -0.633 5.633 15 C 0.198 3.802 16 C -0.145 4.145 17 C -0.088 4.088 18 C -0.141 4.141 19 C -0.099 4.099 20 C -0.156 4.156 21 C 0.137 3.863 22 O -0.490 6.490 23 C 0.697 3.303 24 O -0.533 6.533 25 H 0.266 0.734 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 -19.135 -2.724 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.132 3.868 10 N -0.300 5.300 11 C 0.303 3.697 12 O -0.348 6.348 13 C -0.066 4.066 14 N -0.373 5.373 15 C 0.076 3.924 16 C -0.147 4.147 17 C -0.107 4.107 18 C -0.159 4.159 19 C -0.117 4.117 20 C -0.174 4.174 21 C 0.091 3.909 22 O -0.306 6.306 23 C 0.400 3.600 24 O -0.407 6.407 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 7.032 -18.784 -3.206 20.312 hybrid contribution 0.073 1.035 0.359 1.098 sum 7.104 -17.749 -2.847 19.329 Atomic orbital electron populations 1.69916 1.06021 1.27459 1.49520 1.24891 0.94948 0.99364 0.94503 0.86390 0.79692 0.82470 0.78278 1.20348 1.20920 1.19802 1.21235 0.93377 0.90129 1.52511 0.92231 1.19595 0.86565 0.80798 0.99810 1.46893 1.42781 1.34009 1.06271 1.20659 0.80823 0.82711 0.85478 1.90758 1.60160 1.65585 1.18267 1.22471 1.02089 1.00540 0.81472 1.47731 1.48172 1.35620 1.05803 1.19981 0.91992 0.88026 0.92354 1.20661 0.99631 0.96271 0.98182 1.20961 0.99391 0.91801 0.98561 1.21097 0.96717 0.98638 0.99413 1.21051 0.97267 0.97081 0.96290 1.21513 1.00751 0.93145 1.02006 1.18514 0.93593 0.86950 0.91856 1.84760 1.67530 1.27300 1.50977 1.16061 0.79288 0.79429 0.85213 1.90837 1.63323 1.66037 1.20491 0.92397 0.92858 0.93056 0.87190 0.86895 0.89123 0.87937 0.85644 0.85913 0.85853 0.85465 0.73665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.15 9.39 -34.44 -0.32 -15.47 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.25 6.48 5.45 -5.20 -0.03 6.45 16 10 N -0.56 -11.95 2.59 -122.03 -0.32 -12.26 16 11 C 0.52 9.79 8.31 -10.56 -0.09 9.70 16 12 O -0.48 -10.44 17.76 5.60 0.10 -10.34 16 13 C 0.06 0.77 7.66 -4.32 -0.03 0.74 16 14 N -0.63 -9.13 3.00 -181.39 -0.54 -9.68 16 15 C 0.20 2.31 5.94 -5.19 -0.03 2.28 16 16 C -0.15 -1.71 5.48 -104.47 -0.57 -2.28 16 17 C -0.09 -0.83 9.67 -39.61 -0.38 -1.21 16 18 C -0.14 -1.24 10.04 -39.56 -0.40 -1.64 16 19 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 20 C -0.16 -1.80 9.99 -39.44 -0.39 -2.20 16 21 C 0.14 1.85 6.68 -39.22 -0.26 1.59 16 22 O -0.49 -7.80 11.57 -40.68 -0.47 -8.27 16 23 C 0.70 13.55 8.18 -88.01 -0.72 12.83 16 24 O -0.53 -11.67 13.69 -15.94 -0.22 -11.89 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.05 1.46 7.87 -51.93 -0.41 1.05 16 27 H 0.05 1.41 8.00 -51.92 -0.42 0.99 16 28 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.09 0.74 8.01 -51.93 -0.42 0.32 16 31 H 0.10 1.38 7.74 -51.93 -0.40 0.97 16 32 H 0.13 0.84 8.04 -52.48 -0.42 0.42 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.40 6.60 6.65 45.56 0.30 6.90 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -33.43 317.92 -8.09 -41.52 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.42 Total: 3.43 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -3.73 Total: 11.24 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.12 Total: -47.30 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.59 Total: -30.50 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.43 -8.09 -41.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819169846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.137 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.59 seconds