Wall clock time and date at job start Tue Mar 31 2020 08:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47345 * 270.00160 * 3 2 1 5 5 H 1.48503 * 109.47223 * 30.00601 * 3 2 1 6 6 H 1.48506 * 109.47083 * 150.00044 * 3 2 1 7 7 C 1.37881 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99571 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46993 * 180.02562 * 9 7 2 11 11 C 1.34765 * 124.18545 * 89.97265 * 10 9 7 12 12 O 1.21235 * 127.15098 * 359.97438 * 11 10 9 13 13 C 1.51579 * 105.69206 * 180.02562 * 11 10 9 14 14 N 1.47312 * 103.59036 * 359.97438 * 13 11 10 15 15 C 1.46499 * 126.69197 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47453 * 90.00104 * 15 14 13 17 17 C 1.38163 * 120.02776 * 260.32685 * 16 15 14 18 18 C 1.38241 * 120.05692 * 180.29514 * 17 16 15 19 19 C 1.38292 * 120.10853 * 359.67667 * 18 17 16 20 20 C 1.38119 * 120.05538 * 359.97438 * 19 18 17 21 21 C 1.38712 * 120.02731 * 79.99657 * 16 15 14 22 22 O 1.35896 * 120.05761 * 0.02562 * 21 16 15 23 23 C 1.33800 * 124.17585 * 270.27282 * 10 9 7 24 24 O 1.21538 * 123.76801 * 359.97438 * 23 10 9 25 25 H 0.96998 * 120.00069 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47602 * 59.99589 * 9 7 2 27 27 H 1.09007 * 109.46886 * 299.99484 * 9 7 2 28 28 H 1.09003 * 110.60075 * 241.47505 * 13 11 10 29 29 H 1.08995 * 110.60329 * 118.52176 * 13 11 10 30 30 H 1.09005 * 109.47054 * 329.99818 * 15 14 13 31 31 H 1.09004 * 109.47005 * 210.00389 * 15 14 13 32 32 H 1.08004 * 119.97440 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.95005 * 179.69764 * 18 17 16 34 34 H 1.07997 * 119.97028 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.02891 * 180.02562 * 20 19 18 36 36 H 0.96700 * 114.00170 * 269.72567 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.6948 -4.1883 1.1135 12 8 2.4425 -3.8933 2.2620 13 6 3.6296 -5.2804 0.6329 14 7 3.5482 -5.1847 -0.8348 15 6 4.2612 -6.0167 -1.8072 16 6 3.4268 -7.2263 -2.1411 17 6 3.6960 -8.4399 -1.5380 18 6 2.9348 -9.5513 -1.8484 19 6 1.8980 -9.4501 -2.7579 20 6 1.6202 -8.2375 -3.3581 21 6 2.3834 -7.1207 -3.0490 22 8 2.1126 -5.9268 -3.6388 23 6 2.6964 -4.1799 -1.1083 24 8 2.4045 -3.8293 -2.2348 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6242 -2.5575 0.8881 28 1 3.2852 -6.2571 0.9728 29 1 4.6475 -5.0915 0.9739 30 1 5.2125 -6.3374 -1.3825 31 1 4.4442 -5.4399 -2.7139 32 1 4.5052 -8.5215 -0.8274 33 1 3.1500 -10.5002 -1.3797 34 1 1.3045 -10.3197 -2.9985 35 1 0.8101 -8.1588 -4.0680 36 1 1.4778 -5.3828 -3.1527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819169846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:34 Heat of formation + Delta-G solvation = -75.211190 kcal Electronic energy + Delta-G solvation = -23145.950931 eV Core-core repulsion = 19595.586042 eV Total energy + Delta-G solvation = -3550.364890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.14216 -40.72385 -39.43175 -37.54614 -37.04517 -36.54521 -34.86424 -32.92145 -30.84808 -29.94636 -28.64873 -26.99112 -25.20480 -23.48014 -23.38990 -22.35209 -20.98835 -19.17680 -19.01186 -18.30266 -17.85786 -17.56201 -16.91673 -16.77009 -16.66574 -16.14566 -15.87226 -15.72085 -15.16992 -14.89321 -14.84830 -14.68421 -14.27101 -13.78838 -13.69121 -13.25149 -13.13968 -13.03272 -12.88315 -12.71146 -12.41701 -12.31182 -11.97473 -11.64169 -11.35701 -11.11688 -10.71908 -10.55211 -9.98513 -9.82487 -9.46779 -8.33853 -6.48350 0.20620 0.39813 0.75123 1.33681 1.37622 1.39044 1.49385 2.09215 2.25061 2.36056 2.78982 2.98925 3.19719 3.43788 3.74082 3.82966 4.08186 4.22431 4.33162 4.36191 4.53954 4.56829 4.67598 4.69469 4.78440 4.92336 4.99780 5.07709 5.18161 5.46060 5.49850 5.56135 5.57795 5.61319 5.84188 5.96654 6.37994 6.51490 6.59596 6.77440 7.15368 7.27804 8.75913 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.025220 B = 0.004458 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.964826 B = 6278.919431 C = 6735.164017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.053 0.947 9 C 0.266 3.734 10 N -0.574 5.574 11 C 0.504 3.496 12 O -0.516 6.516 13 C 0.082 3.918 14 N -0.614 5.614 15 C 0.196 3.804 16 C -0.156 4.156 17 C -0.079 4.079 18 C -0.134 4.134 19 C -0.099 4.099 20 C -0.173 4.173 21 C 0.093 3.907 22 O -0.510 6.510 23 C 0.688 3.312 24 O -0.570 6.570 25 H 0.271 0.729 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.155 0.845 29 H 0.159 0.841 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.165 0.835 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.123 0.877 36 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.960 -21.613 -1.575 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.592 4.592 8 H 0.072 0.928 9 C 0.146 3.854 10 N -0.317 5.317 11 C 0.294 3.706 12 O -0.390 6.390 13 C -0.042 4.042 14 N -0.353 5.353 15 C 0.077 3.923 16 C -0.158 4.158 17 C -0.097 4.097 18 C -0.152 4.152 19 C -0.117 4.117 20 C -0.192 4.192 21 C 0.048 3.952 22 O -0.324 6.324 23 C 0.391 3.609 24 O -0.447 6.447 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.173 0.827 29 H 0.176 0.824 30 H 0.161 0.839 31 H 0.095 0.905 32 H 0.183 0.817 33 H 0.175 0.825 34 H 0.165 0.835 35 H 0.141 0.859 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 9.910 -21.342 -2.062 23.621 hybrid contribution -0.838 1.642 -0.015 1.844 sum 9.071 -19.700 -2.077 21.787 Atomic orbital electron populations 1.70025 1.07522 1.28667 1.49890 1.25843 0.95903 1.03129 0.93765 0.85332 0.78541 0.77871 0.78600 1.19681 1.19714 1.19074 1.21498 0.93224 0.91523 1.52972 0.92842 1.18945 0.87082 0.82230 0.97133 1.46829 1.42816 1.33601 1.08441 1.21753 0.80991 0.83534 0.84301 1.90729 1.61657 1.67095 1.19504 1.22694 1.02473 0.99548 0.79527 1.47830 1.46292 1.33900 1.07286 1.20282 0.93574 0.87159 0.91299 1.20716 0.99227 0.97407 0.98408 1.21380 0.99875 0.90415 0.98073 1.21570 0.95436 0.99967 0.98241 1.21408 0.97746 0.96756 0.95794 1.21648 1.00960 0.93840 1.02727 1.18990 0.95689 0.86378 0.94103 1.84755 1.67381 1.28585 1.51693 1.16226 0.80066 0.80524 0.84066 1.90814 1.64683 1.67464 1.21691 0.91960 0.95630 0.95601 0.82733 0.82369 0.83892 0.90460 0.81706 0.82493 0.83451 0.85864 0.75017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.84 13.29 21.45 0.28 -55.56 16 2 C 0.01 0.80 5.46 84.66 0.46 1.27 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.55 -32.67 9.39 25.60 0.24 -32.43 16 8 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 9 C 0.27 14.71 5.45 85.63 0.47 15.18 16 10 N -0.57 -25.47 2.59 -777.22 -2.01 -27.48 16 11 C 0.50 18.84 8.31 87.94 0.73 19.57 16 12 O -0.52 -22.77 17.76 -2.89 -0.05 -22.82 16 13 C 0.08 1.75 7.66 85.76 0.66 2.41 16 14 N -0.61 -16.40 3.00 -846.23 -2.54 -18.94 16 15 C 0.20 4.04 5.94 85.63 0.51 4.55 16 16 C -0.16 -3.28 5.48 -19.77 -0.11 -3.38 16 17 C -0.08 -1.08 9.67 22.25 0.22 -0.86 16 18 C -0.13 -1.74 10.04 22.28 0.22 -1.51 16 19 C -0.10 -1.62 10.04 22.25 0.22 -1.40 16 20 C -0.17 -3.99 9.99 22.36 0.22 -3.76 16 21 C 0.09 2.56 6.68 22.51 0.15 2.71 16 22 O -0.51 -17.52 11.57 -72.05 -0.83 -18.35 16 23 C 0.69 27.37 8.18 179.44 1.47 28.84 16 24 O -0.57 -26.50 13.69 16.50 0.23 -26.28 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.03 1.52 7.87 -2.39 -0.02 1.51 16 27 H 0.03 1.53 8.00 -2.38 -0.02 1.51 16 28 H 0.16 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.16 2.19 8.14 -2.39 -0.02 2.18 16 30 H 0.14 1.47 8.01 -2.38 -0.02 1.46 16 31 H 0.08 2.03 7.74 -2.38 -0.02 2.01 16 32 H 0.17 0.96 8.04 -2.91 -0.02 0.93 16 33 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.39 14.32 6.65 -74.06 -0.49 13.83 16 Total: -1.00 -79.89 317.92 3.19 -76.70 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.63 Total: 14.17 kcal Atomic # 6 Polarization: 25.71 SS G_CDS: 5.46 Total: 31.17 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -4.27 Total: -101.98 kcal Atomic # 8 Polarization: -66.79 SS G_CDS: -0.66 Total: -67.45 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -79.89 3.19 -76.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819169846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.487 kcal (2) G-P(sol) polarization free energy of solvation -79.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds