Wall clock time and date at job start Tue Mar 31 2020 06:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99762 * 2 1 4 4 H 1.48499 * 109.46961 * 269.99546 * 3 2 1 5 5 H 1.48498 * 109.47658 * 29.99314 * 3 2 1 6 6 H 1.48496 * 109.47471 * 149.99745 * 3 2 1 7 7 C 1.37873 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00220 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47113 * 179.97438 * 10 9 7 12 12 S 1.81401 * 109.47184 * 180.02562 * 11 10 9 13 13 C 1.76196 * 103.00151 * 180.02562 * 12 11 10 14 14 C 1.39062 * 120.02174 * 0.02562 * 13 12 11 15 15 C 1.38141 * 120.15727 * 179.97438 * 14 13 12 16 16 C 1.38112 * 120.19918 * 0.02562 * 15 14 13 17 17 C 1.39335 * 120.04482 * 359.97438 * 16 15 14 18 18 C 1.48477 * 120.07585 * 180.02562 * 17 16 15 19 19 N 1.34046 * 126.66950 * 179.68853 * 18 17 16 20 20 N 1.28988 * 107.26319 * 179.83552 * 19 18 17 21 21 N 1.28723 * 108.94378 * 0.43591 * 20 19 18 22 22 H 0.97005 * 125.33875 * 179.72348 * 21 20 19 23 23 N 1.28868 * 109.31778 * 359.72442 * 21 20 19 24 24 C 1.38762 * 120.02319 * 180.02562 * 13 12 11 25 25 H 0.96997 * 120.00044 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46828 * 59.99557 * 9 7 2 27 27 H 1.09003 * 109.46822 * 299.99811 * 9 7 2 28 28 H 1.09002 * 109.47158 * 60.00271 * 10 9 7 29 29 H 1.09003 * 109.47481 * 299.99920 * 10 9 7 30 30 H 1.09002 * 109.46747 * 60.00190 * 11 10 9 31 31 H 1.08997 * 109.46912 * 299.99925 * 11 10 9 32 32 H 1.07998 * 119.92242 * 359.97438 * 14 13 12 33 33 H 1.07995 * 119.89642 * 180.02562 * 15 14 13 34 34 H 1.08007 * 119.97677 * 180.27598 * 16 15 14 35 35 H 1.07999 * 120.09882 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 16 2.6593 -6.3658 0.0019 13 6 1.6120 -7.7828 0.0019 14 6 0.2302 -7.6266 0.0007 15 6 -0.5935 -8.7356 0.0001 16 6 -0.0495 -10.0051 0.0012 17 6 1.3339 -10.1712 0.0023 18 6 1.9195 -11.5356 0.0028 19 7 3.2232 -11.8472 -0.0020 20 7 3.3092 -13.1342 0.0040 21 7 2.1222 -13.6323 0.0030 22 1 1.9111 -14.5791 0.0028 23 7 1.2585 -12.6759 0.0022 24 6 2.1655 -9.0552 0.0029 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8906 29 1 2.8721 -3.6043 -0.8895 30 1 0.8535 -5.0450 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 -0.2001 -6.6360 0.0004 33 1 -1.6661 -8.6095 -0.0011 34 1 -0.6969 -10.8696 -0.0038 35 1 3.2383 -9.1792 0.0033 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822805757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:11 Heat of formation + Delta-G solvation = 129.580454 kcal Electronic energy + Delta-G solvation = -18606.322158 eV Core-core repulsion = 15539.883323 eV Total energy + Delta-G solvation = -3066.438835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.74744 -39.21999 -34.74082 -34.55436 -33.89219 -32.12757 -31.20752 -30.79661 -27.58297 -25.10375 -24.80464 -23.59823 -22.55185 -21.85511 -20.34157 -19.53673 -17.69797 -17.43239 -16.47407 -16.21178 -15.31983 -15.13153 -14.74028 -14.56239 -14.32877 -13.87248 -13.63724 -13.39543 -12.67706 -12.55222 -11.99142 -11.96277 -11.68698 -11.67046 -11.60418 -11.35801 -11.29770 -10.91284 -10.89029 -10.55266 -10.00676 -9.90319 -9.72836 -9.38587 -9.15514 -8.96390 -8.39635 -7.30145 -6.04714 -4.07371 0.44949 0.90839 1.12014 1.64588 1.94260 2.09327 2.64455 3.30735 3.37079 3.39850 3.40828 3.55916 3.92605 4.43227 4.73893 4.83349 4.91838 5.12520 5.18356 5.31188 5.31745 5.37372 5.47396 5.50269 5.73236 5.97641 6.03010 6.11055 6.17027 6.23539 6.45650 6.60557 6.61727 6.94266 7.58785 7.70008 7.84763 7.93702 8.34974 8.98903 9.57156 11.06558 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.049943 B = 0.002371 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.506777 B =11807.188774 C =12341.946085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.096 4.096 11 C -0.097 4.097 12 S -0.122 6.122 13 C -0.079 4.079 14 C -0.113 4.113 15 C -0.101 4.101 16 C -0.093 4.093 17 C -0.007 4.007 18 C 0.225 3.775 19 N -0.266 5.266 20 N -0.050 5.050 21 N -0.229 5.229 22 H 0.475 0.525 23 N -0.295 5.295 24 C -0.061 4.061 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 -26.505 0.008 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.135 4.135 11 C -0.245 4.245 12 S 0.126 5.874 13 C -0.192 4.192 14 C -0.138 4.138 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.012 4.012 18 C -0.054 4.054 19 N -0.139 5.139 20 N -0.045 5.045 21 N -0.075 5.075 22 H 0.329 0.671 23 N -0.146 5.146 24 C -0.087 4.087 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.117 -26.650 0.010 26.673 hybrid contribution -1.521 0.442 -0.011 1.584 sum -0.405 -26.209 -0.001 26.212 Atomic orbital electron populations 1.69957 1.06066 1.26729 1.50702 1.25020 0.94880 0.99336 0.95205 0.86564 0.79856 0.83276 0.78152 1.20615 1.21210 1.19804 1.21205 0.93147 0.90800 1.50830 0.92491 1.19101 0.93747 0.90725 0.97515 1.21498 0.99301 0.90909 1.01833 1.24000 0.99793 0.95524 1.05191 1.85695 1.14371 0.96216 1.91141 1.21833 0.96640 0.97419 1.03325 1.21514 0.92100 1.00188 0.99974 1.20997 1.00121 0.91491 0.99430 1.21100 0.93030 0.98040 0.99454 1.17053 0.93002 0.85458 1.05720 1.23689 0.86928 0.93690 1.01128 1.76135 1.17451 1.02705 1.17570 1.78929 1.06861 1.04037 1.14672 1.47731 1.01847 1.11743 1.46177 0.67076 1.74916 1.21114 0.96351 1.22242 1.20734 1.00259 0.89244 0.98503 0.92932 0.96326 0.96307 0.92134 0.92129 0.89639 0.89642 0.84811 0.84866 0.84969 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.70 4.97 -27.89 -0.14 0.56 16 10 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 11 C -0.10 -1.57 4.33 37.16 0.16 -1.40 16 12 S -0.12 -1.82 21.92 -107.50 -2.36 -4.18 16 13 C -0.08 -1.06 6.11 -39.08 -0.24 -1.29 16 14 C -0.11 -1.36 9.36 -39.31 -0.37 -1.72 16 15 C -0.10 -1.01 10.03 -39.66 -0.40 -1.41 16 16 C -0.09 -0.94 9.69 -39.22 -0.38 -1.32 16 17 C -0.01 -0.08 5.87 -104.92 -0.62 -0.70 16 18 C 0.23 2.58 7.93 -156.31 -1.24 1.34 16 19 N -0.27 -3.24 12.23 32.16 0.39 -2.84 16 20 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 21 N -0.23 -1.56 7.90 60.35 0.48 -1.09 16 22 H 0.48 0.81 8.96 -340.37 -3.05 -2.24 16 23 N -0.29 -2.76 12.08 32.17 0.39 -2.37 16 24 C -0.06 -0.78 9.44 -39.04 -0.37 -1.14 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.32 7.74 -51.92 -0.40 0.92 16 31 H 0.08 1.32 7.75 -51.93 -0.40 0.92 16 32 H 0.13 1.57 5.86 -52.49 -0.31 1.26 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 1.10 7.88 -52.48 -0.41 0.68 16 35 H 0.14 1.76 7.88 -52.49 -0.41 1.34 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -31.92 321.96 -10.50 -42.42 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -6.65 Total: -5.46 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -4.14 Total: -22.40 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 2.81 Total: -31.64 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.36 Total: -4.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.92 -10.50 -42.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822805757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.001 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds