Wall clock time and date at job start Tue Mar 31 2020 08:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47440 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47231 * 300.00183 * 3 2 1 6 6 H 1.48500 * 109.46851 * 59.99923 * 3 2 1 7 7 C 1.37878 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00294 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00113 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47070 * 179.97438 * 9 7 2 11 11 C 1.42893 * 113.99981 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47289 * 180.02562 * 11 10 9 13 13 O 1.45195 * 109.46969 * 64.99856 * 12 11 10 14 14 C 1.34847 * 116.99882 * 180.02562 * 13 12 11 15 15 O 1.21575 * 120.00158 * 0.02562 * 14 13 12 16 16 C 1.46865 * 120.00447 * 179.97438 * 14 13 12 17 17 C 1.35969 * 125.45742 * 180.26767 * 16 14 13 18 18 C 1.41435 * 107.58630 * 180.11367 * 17 16 14 19 19 C 1.40205 * 133.66854 * 179.97438 * 18 17 16 20 20 C 1.37023 * 118.20904 * 179.68308 * 19 18 17 21 21 C 1.38745 * 119.64656 * 359.97438 * 20 19 18 22 22 N 1.31579 * 121.56646 * 0.02562 * 21 20 19 23 23 C 1.32744 * 121.55638 * 359.97438 * 22 21 20 24 24 N 1.37184 * 132.91115 * 180.02562 * 23 22 21 25 25 H 0.96995 * 125.54410 * 359.97438 * 24 23 22 26 26 H 0.97003 * 119.99910 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46977 * 59.99460 * 9 7 2 28 28 H 1.09000 * 109.46824 * 299.99566 * 9 7 2 29 29 H 1.08998 * 109.47758 * 59.99722 * 11 10 9 30 30 H 1.09006 * 109.46907 * 299.99621 * 11 10 9 31 31 H 1.08998 * 109.46571 * 304.99798 * 12 11 10 32 32 H 1.08998 * 109.46971 * 184.99498 * 12 11 10 33 33 H 1.07999 * 126.20331 * 0.02562 * 17 16 14 34 34 H 1.07999 * 120.89601 * 359.70390 * 19 18 17 35 35 H 1.08006 * 120.17649 * 180.02562 * 20 19 18 36 36 H 1.07991 * 119.21916 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6480 -5.9563 0.0017 13 8 3.3992 -5.8880 1.2424 14 6 4.3985 -6.7791 1.4028 15 8 4.6355 -7.5905 0.5290 16 6 5.2014 -6.7688 2.6325 17 6 6.2340 -7.6095 2.9074 18 6 6.7325 -7.2701 4.1867 19 6 7.7681 -7.7731 4.9869 20 6 7.9877 -7.1871 6.2059 21 6 7.1910 -6.1257 6.6106 22 7 6.2220 -5.6627 5.8504 23 6 5.9613 -6.1889 4.6599 24 7 5.0310 -5.8994 3.6942 25 1 4.3625 -5.1986 3.7473 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5568 0.8903 29 1 0.9445 -4.9828 -0.8885 30 1 0.9452 -4.9822 0.8914 31 1 3.3215 -5.7961 -0.8402 32 1 2.1820 -6.9376 -0.0873 33 1 6.6052 -8.3950 2.2658 34 1 8.3765 -8.5999 4.6514 35 1 8.7773 -7.5489 6.8478 36 1 7.3699 -5.6693 7.5728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840637340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:33 Heat of formation + Delta-G solvation = -62.020525 kcal Electronic energy + Delta-G solvation = -21473.769948 eV Core-core repulsion = 17923.977049 eV Total energy + Delta-G solvation = -3549.792899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06486 -40.24497 -38.05453 -37.11798 -36.15573 -33.40247 -32.82018 -30.74329 -30.31547 -29.56486 -27.03134 -25.39410 -23.06101 -22.70722 -22.35554 -21.72480 -20.56777 -18.78751 -18.17241 -16.92989 -16.70510 -16.41786 -16.19234 -15.61503 -15.58291 -15.12931 -14.70280 -14.46421 -14.32270 -13.70460 -13.52232 -13.32862 -13.14998 -12.78207 -12.53604 -12.38487 -12.03995 -11.52211 -11.07492 -10.94605 -10.89103 -10.84518 -10.70422 -10.51796 -10.09891 -9.68590 -9.16679 -8.94271 -8.82568 -8.47365 -8.27372 -6.16267 -4.18171 0.26849 1.11689 1.66756 2.26014 2.60903 2.89264 3.26494 3.33154 3.39713 3.59976 4.20491 4.28034 4.38379 4.49258 4.64225 4.66611 4.75968 4.91878 5.09891 5.20579 5.20960 5.35856 5.39817 5.52168 5.76412 5.81822 5.91208 5.94445 6.03920 6.08454 6.32291 6.53411 6.96024 6.99006 7.33755 7.55953 7.72541 7.73835 8.07152 8.45671 8.94454 9.46987 10.95272 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.003276 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.874576 B = 8545.658123 C = 9930.321314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.060 3.940 12 C 0.077 3.923 13 O -0.340 6.340 14 C 0.531 3.469 15 O -0.494 6.494 16 C 0.050 3.950 17 C -0.093 4.093 18 C -0.169 4.169 19 C -0.013 4.013 20 C -0.208 4.208 21 C 0.157 3.843 22 N -0.497 5.497 23 C 0.301 3.699 24 N -0.549 5.549 25 H 0.435 0.565 26 H 0.264 0.736 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.818 -17.621 10.329 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.003 3.997 13 O -0.256 6.256 14 C 0.375 3.625 15 O -0.382 6.382 16 C -0.058 4.058 17 C -0.119 4.119 18 C -0.176 4.176 19 C -0.040 4.040 20 C -0.229 4.229 21 C -0.012 4.012 22 N -0.209 5.209 23 C 0.066 3.934 24 N -0.155 5.155 25 H 0.276 0.724 26 H 0.074 0.926 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.181 0.819 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 12.166 -16.873 10.168 23.154 hybrid contribution 0.085 0.558 -0.379 0.680 sum 12.250 -16.315 9.789 22.629 Atomic orbital electron populations 1.69967 1.06109 1.27160 1.50490 1.24951 0.94995 0.99490 0.95043 0.86274 0.80035 0.82487 0.77681 1.19464 1.20782 1.20762 1.21080 0.94125 0.89263 1.50923 0.91476 1.20253 0.88724 0.83455 0.95555 1.87918 1.35374 1.12606 1.95244 1.22344 0.93154 0.85453 1.00787 1.23327 0.93602 0.99173 0.83555 1.86660 1.43103 1.53438 1.42420 1.19816 0.78786 0.78905 0.84978 1.90900 1.67953 1.37949 1.41380 1.19097 1.01004 0.97160 0.88575 1.20861 0.95204 1.00330 0.95517 1.18819 1.00976 1.00716 0.97122 1.20850 0.93471 0.97292 0.92383 1.21636 1.03311 0.99899 0.98078 1.22649 0.88559 0.92449 0.97588 1.66628 1.19956 1.30912 1.03448 1.18416 0.91375 0.93818 0.89775 1.41801 1.29812 1.30834 1.13074 0.72441 0.92634 0.97532 0.97481 0.91597 0.93134 0.90023 0.89962 0.81861 0.84412 0.84282 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.15 9.43 -34.44 -0.32 -15.48 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.25 5.69 36.01 0.20 5.46 16 10 O -0.39 -9.29 10.30 -38.80 -0.40 -9.69 16 11 C 0.06 1.06 6.33 37.16 0.24 1.30 16 12 C 0.08 1.16 5.86 37.16 0.22 1.37 16 13 O -0.34 -5.46 10.20 -43.68 -0.45 -5.91 16 14 C 0.53 7.89 7.94 34.22 0.27 8.16 16 15 O -0.49 -7.88 16.63 -19.32 -0.32 -8.20 16 16 C 0.05 0.67 7.00 -82.28 -0.58 0.09 16 17 C -0.09 -1.05 10.54 -39.18 -0.41 -1.47 16 18 C -0.17 -1.90 6.18 -106.90 -0.66 -2.56 16 19 C -0.01 -0.11 10.19 -39.28 -0.40 -0.51 16 20 C -0.21 -1.48 10.04 -39.83 -0.40 -1.88 16 21 C 0.16 1.38 11.15 -17.47 -0.19 1.18 16 22 N -0.50 -6.19 10.40 -12.24 -0.13 -6.32 16 23 C 0.30 3.91 8.40 -155.76 -1.31 2.60 16 24 N -0.55 -7.20 6.17 -8.86 -0.05 -7.26 16 25 H 0.43 5.51 8.96 -40.82 -0.37 5.14 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 36 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -34.32 328.19 -8.27 -42.59 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.14 Total: -0.82 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -3.45 Total: -0.21 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.55 Total: -39.54 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -1.17 Total: -23.79 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.32 -8.27 -42.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840637340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.431 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds