Wall clock time and date at job start Tue Mar 31 2020 08:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47440 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47231 * 300.00183 * 3 2 1 6 6 H 1.48500 * 109.46851 * 59.99923 * 3 2 1 7 7 C 1.37878 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00294 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00113 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47070 * 179.97438 * 9 7 2 11 11 C 1.42893 * 113.99981 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47289 * 180.02562 * 11 10 9 13 13 O 1.45195 * 109.46969 * 64.99856 * 12 11 10 14 14 C 1.34847 * 116.99882 * 180.02562 * 13 12 11 15 15 O 1.21575 * 120.00158 * 0.02562 * 14 13 12 16 16 C 1.46865 * 120.00447 * 179.97438 * 14 13 12 17 17 C 1.35969 * 125.45742 * 180.26767 * 16 14 13 18 18 C 1.41435 * 107.58630 * 180.11367 * 17 16 14 19 19 C 1.40205 * 133.66854 * 179.97438 * 18 17 16 20 20 C 1.37023 * 118.20904 * 179.68308 * 19 18 17 21 21 C 1.38745 * 119.64656 * 359.97438 * 20 19 18 22 22 N 1.31579 * 121.56646 * 0.02562 * 21 20 19 23 23 C 1.32744 * 121.55638 * 359.97438 * 22 21 20 24 24 N 1.37184 * 132.91115 * 180.02562 * 23 22 21 25 25 H 0.96995 * 125.54410 * 359.97438 * 24 23 22 26 26 H 0.97003 * 119.99910 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46977 * 59.99460 * 9 7 2 28 28 H 1.09000 * 109.46824 * 299.99566 * 9 7 2 29 29 H 1.08998 * 109.47758 * 59.99722 * 11 10 9 30 30 H 1.09006 * 109.46907 * 299.99621 * 11 10 9 31 31 H 1.08998 * 109.46571 * 304.99798 * 12 11 10 32 32 H 1.08998 * 109.46971 * 184.99498 * 12 11 10 33 33 H 1.07999 * 126.20331 * 0.02562 * 17 16 14 34 34 H 1.07999 * 120.89601 * 359.70390 * 19 18 17 35 35 H 1.08006 * 120.17649 * 180.02562 * 20 19 18 36 36 H 1.07991 * 119.21916 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6480 -5.9563 0.0017 13 8 3.3992 -5.8880 1.2424 14 6 4.3985 -6.7791 1.4028 15 8 4.6355 -7.5905 0.5290 16 6 5.2014 -6.7688 2.6325 17 6 6.2340 -7.6095 2.9074 18 6 6.7325 -7.2701 4.1867 19 6 7.7681 -7.7731 4.9869 20 6 7.9877 -7.1871 6.2059 21 6 7.1910 -6.1257 6.6106 22 7 6.2220 -5.6627 5.8504 23 6 5.9613 -6.1889 4.6599 24 7 5.0310 -5.8994 3.6942 25 1 4.3625 -5.1986 3.7473 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5568 0.8903 29 1 0.9445 -4.9828 -0.8885 30 1 0.9452 -4.9822 0.8914 31 1 3.3215 -5.7961 -0.8402 32 1 2.1820 -6.9376 -0.0873 33 1 6.6052 -8.3950 2.2658 34 1 8.3765 -8.5999 4.6514 35 1 8.7773 -7.5489 6.8478 36 1 7.3699 -5.6693 7.5728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840637340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:29 Heat of formation + Delta-G solvation = -84.247253 kcal Electronic energy + Delta-G solvation = -21474.733771 eV Core-core repulsion = 17923.977049 eV Total energy + Delta-G solvation = -3550.756723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -42.91528 -41.37473 -38.98849 -38.62167 -37.54223 -34.98931 -34.16097 -31.98390 -31.23418 -30.57883 -29.06979 -26.36059 -24.60801 -23.89655 -23.68627 -22.79305 -21.54878 -19.75663 -19.10962 -18.72456 -18.03749 -17.90244 -17.18982 -16.90064 -16.52305 -16.43980 -16.24366 -16.03994 -15.43078 -15.05942 -14.52645 -14.35559 -14.26476 -13.94757 -13.80674 -13.31589 -13.24897 -13.14934 -12.94756 -12.76411 -12.53358 -12.14902 -11.91356 -11.83978 -11.65793 -11.31122 -10.94353 -10.42681 -10.31850 -9.59251 -9.34158 -8.36491 -6.48615 -0.57339 0.40715 0.76637 1.26892 1.37419 1.38410 1.53071 1.63493 1.88527 2.31033 2.87262 2.97563 3.01159 3.40276 3.48685 3.64446 3.85937 3.97867 4.06505 4.12239 4.15802 4.36508 4.44625 4.55553 4.64849 4.66267 4.81151 4.87205 5.10947 5.15221 5.19464 5.31606 5.36069 5.50336 5.80078 5.90912 6.08339 6.41404 6.47245 6.75284 6.95567 7.23179 8.75877 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.003276 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.874576 B = 8545.658123 C = 9930.321314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.052 3.948 12 C 0.080 3.920 13 O -0.358 6.358 14 C 0.536 3.464 15 O -0.510 6.510 16 C 0.017 3.983 17 C -0.073 4.073 18 C -0.187 4.187 19 C -0.010 4.010 20 C -0.197 4.197 21 C 0.157 3.843 22 N -0.538 5.538 23 C 0.277 3.723 24 N -0.559 5.559 25 H 0.429 0.571 26 H 0.272 0.728 27 H -0.006 1.006 28 H -0.011 1.011 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.022 -18.364 11.503 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.076 0.924 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.025 4.025 12 C 0.007 3.993 13 O -0.274 6.274 14 C 0.381 3.619 15 O -0.400 6.400 16 C -0.091 4.091 17 C -0.100 4.100 18 C -0.194 4.194 19 C -0.036 4.036 20 C -0.218 4.218 21 C -0.012 4.012 22 N -0.253 5.253 23 C 0.043 3.957 24 N -0.166 5.166 25 H 0.269 0.731 26 H 0.081 0.919 27 H 0.012 0.988 28 H 0.007 0.993 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.201 0.799 34 H 0.190 0.810 35 H 0.199 0.801 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 14.371 -17.648 11.341 25.429 hybrid contribution -0.521 0.683 -0.586 1.040 sum 13.850 -16.965 10.756 24.399 Atomic orbital electron populations 1.70058 1.07621 1.28670 1.50374 1.25923 0.95982 1.03271 0.93865 0.85162 0.78537 0.77448 0.78424 1.19157 1.19409 1.19563 1.21405 0.94004 0.91005 1.52420 0.92370 1.19870 0.88526 0.84314 0.93948 1.87862 1.35574 1.14249 1.95350 1.22685 0.94476 0.83264 1.02062 1.23333 0.93060 0.99636 0.83292 1.86650 1.43797 1.54245 1.42733 1.20005 0.78305 0.78225 0.85372 1.90872 1.68462 1.38542 1.42098 1.19039 1.02458 0.98971 0.88593 1.21178 0.93710 0.99448 0.95626 1.19104 1.02095 1.00784 0.97382 1.21347 0.92384 0.97719 0.92143 1.22103 1.03261 0.98465 0.97962 1.23397 0.87246 0.92469 0.98038 1.66659 1.22079 1.32557 1.03955 1.18762 0.91862 0.94848 0.90246 1.41829 1.30219 1.30999 1.13549 0.73144 0.91935 0.98830 0.99287 0.89531 0.92573 0.90364 0.86563 0.79869 0.80962 0.80131 0.78851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.98 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -33.19 9.43 25.60 0.24 -32.94 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.49 16 9 C 0.21 11.68 5.69 71.24 0.41 12.08 16 10 O -0.41 -20.11 10.30 -145.57 -1.50 -21.60 16 11 C 0.05 1.85 6.33 71.98 0.46 2.30 16 12 C 0.08 2.41 5.86 71.98 0.42 2.83 16 13 O -0.36 -11.85 10.20 -54.93 -0.56 -12.41 16 14 C 0.54 16.31 7.94 70.08 0.56 16.87 16 15 O -0.51 -16.33 16.63 19.59 0.33 -16.01 16 16 C 0.02 0.46 7.00 39.86 0.28 0.74 16 17 C -0.07 -1.61 10.54 22.53 0.24 -1.38 16 18 C -0.19 -3.97 6.18 -21.34 -0.13 -4.10 16 19 C -0.01 -0.13 10.19 22.46 0.23 0.10 16 20 C -0.20 -2.05 10.04 22.11 0.22 -1.83 16 21 C 0.16 2.39 11.15 84.85 0.95 3.33 16 22 N -0.54 -13.23 10.40 -192.65 -2.00 -15.23 16 23 C 0.28 7.25 8.40 134.03 1.13 8.38 16 24 N -0.56 -15.52 6.17 -181.96 -1.12 -16.64 16 25 H 0.43 11.96 8.96 -92.71 -0.83 11.13 16 26 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 27 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.09 2.72 8.14 -2.39 -0.02 2.71 16 30 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 36 H 0.19 1.51 8.06 -2.92 -0.02 1.49 16 Total: -1.00 -76.15 328.19 3.19 -72.96 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.29 Total: 10.15 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 5.45 Total: 7.34 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.84 Total: -87.28 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -1.73 Total: -50.02 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -76.15 3.19 -72.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840637340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.287 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds