Wall clock time and date at job start Tue Mar 31 2020 07:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 S 1.81396 * 109.47400 * 120.00045 * 2 1 3 5 5 O 1.42099 * 108.58071 * 70.50836 * 4 2 1 6 6 O 1.42101 * 108.57867 * 299.48506 * 4 2 1 7 7 C 1.81398 * 101.92249 * 184.99749 * 4 2 1 8 8 C 1.50700 * 109.47330 * 179.97438 * 7 4 2 9 9 O 1.20835 * 119.99600 * 0.02562 * 8 7 4 10 10 O 1.34228 * 120.00368 * 180.02562 * 8 7 4 11 11 C 1.45198 * 117.00205 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47075 * 179.97438 * 11 10 8 13 13 C 1.50701 * 115.55544 * 294.88682 * 12 11 10 14 14 H 1.07995 * 119.99892 * 95.15843 * 13 12 11 15 15 C 1.37875 * 119.99625 * 274.89404 * 13 12 11 16 16 N 1.31516 * 120.00645 * 6.38641 * 15 13 12 17 17 Si 1.86804 * 119.99966 * 186.39037 * 15 13 12 18 18 H 1.48497 * 109.46911 * 59.99497 * 17 15 13 19 19 H 1.48501 * 109.47278 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46934 * 299.99733 * 17 15 13 21 21 C 1.52999 * 117.50107 * 80.55676 * 12 11 10 22 22 C 1.53002 * 117.49851 * 149.21518 * 12 11 10 23 23 H 1.09006 * 109.47257 * 300.00007 * 1 2 3 24 24 H 1.08997 * 109.47761 * 60.00128 * 1 2 3 25 25 H 1.08997 * 109.47342 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46862 * 240.00220 * 2 1 3 27 27 H 1.08994 * 109.47529 * 60.00190 * 3 2 1 28 28 H 1.09003 * 109.46479 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46896 * 299.99706 * 3 2 1 30 30 H 1.09004 * 109.47161 * 60.00160 * 7 4 2 31 31 H 1.08998 * 109.47021 * 300.00177 * 7 4 2 32 32 H 1.09001 * 109.46840 * 59.99792 * 11 10 8 33 33 H 1.09000 * 109.47129 * 299.99899 * 11 10 8 34 34 H 0.96998 * 120.00543 * 180.02562 * 16 15 13 35 35 H 1.08998 * 117.50651 * 215.00344 * 21 12 11 36 36 H 1.09007 * 117.49575 * 0.02562 * 21 12 11 37 37 H 1.09004 * 117.50100 * 359.97438 * 22 12 11 38 38 H 1.09000 * 117.49932 * 144.97481 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.8619 -2.2431 1.3456 6 8 1.6606 -0.1636 2.6284 7 6 3.9266 -0.6031 1.3539 8 6 4.6106 -1.2590 2.5256 9 8 3.9563 -1.8376 3.3607 10 8 5.9465 -1.2006 2.6418 11 6 6.5372 -1.8550 3.7954 12 6 8.0570 -1.6836 3.7563 13 6 8.7582 -2.3607 2.6070 14 1 8.9833 -1.8048 1.7089 15 6 9.1173 -3.6883 2.7044 16 7 8.7386 -4.3975 3.7452 17 14 10.1419 -4.4799 1.3578 18 1 11.4382 -3.7655 1.2376 19 1 10.3916 -5.9037 1.6981 20 1 9.4108 -4.3997 0.0677 21 6 8.6309 -0.3537 4.2491 22 6 8.7953 -1.6189 5.0949 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1299 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 4.1445 0.4649 1.3577 31 1 4.2906 -1.0449 0.4263 32 1 6.2910 -2.9167 3.7764 33 1 6.1441 -1.4072 4.7081 34 1 8.9915 -5.3314 3.8138 35 1 9.5155 0.0316 3.7421 36 1 7.9256 0.3990 4.6016 37 1 8.1982 -1.6981 6.0034 38 1 9.7880 -2.0665 5.1443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849707363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:39 Heat of formation + Delta-G solvation = -134.329619 kcal Electronic energy + Delta-G solvation = -21556.568805 eV Core-core repulsion = 18106.791548 eV Total energy + Delta-G solvation = -3449.777257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 10.04 seconds Orbital eigenvalues (eV) -40.02196 -37.10383 -36.96938 -36.09849 -35.52496 -35.34656 -32.01184 -31.04559 -27.76037 -26.73676 -25.27321 -23.02815 -21.38407 -20.89271 -19.34702 -18.81012 -17.80549 -16.90020 -16.80189 -16.44907 -15.99053 -15.75618 -15.08875 -14.81269 -14.64459 -13.93887 -13.71791 -13.53312 -13.45613 -12.93844 -12.74631 -12.24207 -12.13464 -12.12100 -12.04423 -11.83487 -11.80771 -11.71865 -11.19541 -11.01278 -10.92421 -10.63664 -10.49310 -10.45680 -10.31167 -10.00658 -9.65391 -8.89486 -8.51797 -8.27968 -6.11211 -4.17530 -0.32268 2.38452 2.52681 2.84003 3.27223 3.32876 3.34373 3.68299 3.76746 4.16138 4.22366 4.35063 4.65611 4.72987 4.75228 5.00869 5.05678 5.17383 5.18419 5.20087 5.34324 5.34968 5.61530 5.61974 5.89906 6.16482 6.26102 6.43609 6.53904 6.66633 6.97816 7.04058 7.28797 7.39092 7.81580 8.03947 8.33043 8.83940 9.48806 10.98140 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.004062 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.781958 B = 6890.832912 C = 7283.553360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.581 4.581 3 C -0.151 4.151 4 S 2.447 3.553 5 O -0.917 6.917 6 O -0.917 6.917 7 C -0.634 4.634 8 C 0.484 3.516 9 O -0.511 6.511 10 O -0.324 6.324 11 C 0.110 3.890 12 C 0.036 3.964 13 C -0.494 4.494 14 H 0.063 0.937 15 C 0.069 3.931 16 N -0.880 5.880 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.205 4.205 22 C -0.143 4.143 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.140 0.860 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.493 11.053 -8.655 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.690 4.690 3 C -0.209 4.209 4 S 2.623 3.377 5 O -0.914 6.914 6 O -0.914 6.914 7 C -0.759 4.759 8 C 0.325 3.675 9 O -0.401 6.401 10 O -0.238 6.238 11 C 0.037 3.963 12 C 0.035 3.965 13 C -0.532 4.532 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.516 5.516 17 Si 0.721 3.279 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.242 4.242 22 C -0.181 4.181 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.158 0.842 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.185 0.815 31 H 0.186 0.814 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.049 10.225 -7.645 18.256 hybrid contribution 1.131 -0.203 -1.342 1.767 sum -11.918 10.022 -8.987 17.979 Atomic orbital electron populations 1.21631 0.89570 1.04054 1.04774 1.30169 1.07391 1.09936 1.21492 1.21810 1.01819 0.92049 1.05191 1.07807 0.76490 0.76174 0.77224 1.93594 1.81951 1.29546 1.86351 1.93567 1.77099 1.75663 1.45042 1.30690 1.26630 1.12237 1.06307 1.21765 0.83575 0.77583 0.84540 1.90782 1.66140 1.41242 1.41978 1.86499 1.18896 1.69525 1.48867 1.23130 0.93971 0.97108 0.82042 1.18776 0.87466 0.94784 0.95453 1.20334 1.37714 0.95066 1.00079 0.91887 1.25027 0.95548 0.97064 0.95786 1.69977 1.44218 1.08318 1.29061 0.86630 0.80842 0.78247 0.82132 1.20110 1.21189 1.20146 1.23023 1.03055 0.91585 1.06582 1.22555 1.01897 0.99786 0.93835 0.90508 0.89909 0.90803 0.84197 0.90202 0.90822 0.90014 0.81521 0.81352 0.89978 0.93676 0.92696 0.89980 0.91458 0.91490 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.19 37.16 0.34 -0.64 16 2 C -0.58 -4.18 3.35 -26.73 -0.09 -4.27 16 3 C -0.15 -0.84 8.90 37.16 0.33 -0.51 16 4 S 2.45 31.12 3.50 -107.50 -0.38 30.75 16 5 O -0.92 -15.33 17.95 -59.53 -1.07 -16.40 16 6 O -0.92 -14.45 17.91 -59.54 -1.07 -15.52 16 7 C -0.63 -7.71 5.79 36.01 0.21 -7.50 16 8 C 0.48 9.32 7.98 36.01 0.29 9.61 16 9 O -0.51 -11.42 15.37 -21.38 -0.33 -11.75 16 10 O -0.32 -7.01 10.16 -39.25 -0.40 -7.41 16 11 C 0.11 2.63 5.29 37.15 0.20 2.83 16 12 C 0.04 0.88 1.61 -155.66 -0.25 0.63 16 13 C -0.49 -13.30 8.77 -34.44 -0.30 -13.60 16 14 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 15 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 16 N -0.88 -24.69 12.93 55.43 0.72 -23.97 16 17 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.21 -4.39 9.96 -26.70 -0.27 -4.65 16 22 C -0.14 -3.28 9.43 -26.69 -0.25 -3.54 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.14 0.67 8.14 -51.92 -0.42 0.24 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.30 6.39 -51.93 -0.33 -0.04 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.17 1.35 6.78 -51.92 -0.35 1.00 16 31 H 0.17 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.08 2.16 8.13 -51.93 -0.42 1.73 16 33 H 0.04 1.00 8.09 -51.93 -0.42 0.58 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 36 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -35.69 339.41 -8.04 -43.73 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.72 Total: -0.49 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 0.11 Total: -19.87 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.72 Total: -23.97 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -2.86 Total: -51.07 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 31.12 SS G_CDS: -0.38 Total: 30.75 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.69 -8.04 -43.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849707363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.596 kcal (2) G-P(sol) polarization free energy of solvation -35.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.04 seconds