Wall clock time and date at job start Tue Mar 31 2020 07:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 S 1.81396 * 109.47400 * 120.00045 * 2 1 3 5 5 O 1.42099 * 108.58071 * 70.50836 * 4 2 1 6 6 O 1.42101 * 108.57867 * 299.48506 * 4 2 1 7 7 C 1.81398 * 101.92249 * 184.99749 * 4 2 1 8 8 C 1.50700 * 109.47330 * 179.97438 * 7 4 2 9 9 O 1.20835 * 119.99600 * 0.02562 * 8 7 4 10 10 O 1.34228 * 120.00368 * 180.02562 * 8 7 4 11 11 C 1.45198 * 117.00205 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47075 * 179.97438 * 11 10 8 13 13 C 1.50701 * 115.55544 * 294.88682 * 12 11 10 14 14 H 1.07995 * 119.99892 * 95.15843 * 13 12 11 15 15 C 1.37875 * 119.99625 * 274.89404 * 13 12 11 16 16 N 1.31516 * 120.00645 * 6.38641 * 15 13 12 17 17 Si 1.86804 * 119.99966 * 186.39037 * 15 13 12 18 18 H 1.48497 * 109.46911 * 59.99497 * 17 15 13 19 19 H 1.48501 * 109.47278 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46934 * 299.99733 * 17 15 13 21 21 C 1.52999 * 117.50107 * 80.55676 * 12 11 10 22 22 C 1.53002 * 117.49851 * 149.21518 * 12 11 10 23 23 H 1.09006 * 109.47257 * 300.00007 * 1 2 3 24 24 H 1.08997 * 109.47761 * 60.00128 * 1 2 3 25 25 H 1.08997 * 109.47342 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46862 * 240.00220 * 2 1 3 27 27 H 1.08994 * 109.47529 * 60.00190 * 3 2 1 28 28 H 1.09003 * 109.46479 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46896 * 299.99706 * 3 2 1 30 30 H 1.09004 * 109.47161 * 60.00160 * 7 4 2 31 31 H 1.08998 * 109.47021 * 300.00177 * 7 4 2 32 32 H 1.09001 * 109.46840 * 59.99792 * 11 10 8 33 33 H 1.09000 * 109.47129 * 299.99899 * 11 10 8 34 34 H 0.96998 * 120.00543 * 180.02562 * 16 15 13 35 35 H 1.08998 * 117.50651 * 215.00344 * 21 12 11 36 36 H 1.09007 * 117.49575 * 0.02562 * 21 12 11 37 37 H 1.09004 * 117.50100 * 359.97438 * 22 12 11 38 38 H 1.09000 * 117.49932 * 144.97481 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.8619 -2.2431 1.3456 6 8 1.6606 -0.1636 2.6284 7 6 3.9266 -0.6031 1.3539 8 6 4.6106 -1.2590 2.5256 9 8 3.9563 -1.8376 3.3607 10 8 5.9465 -1.2006 2.6418 11 6 6.5372 -1.8550 3.7954 12 6 8.0570 -1.6836 3.7563 13 6 8.7582 -2.3607 2.6070 14 1 8.9833 -1.8048 1.7089 15 6 9.1173 -3.6883 2.7044 16 7 8.7386 -4.3975 3.7452 17 14 10.1419 -4.4799 1.3578 18 1 11.4382 -3.7655 1.2376 19 1 10.3916 -5.9037 1.6981 20 1 9.4108 -4.3997 0.0677 21 6 8.6309 -0.3537 4.2491 22 6 8.7953 -1.6189 5.0949 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1299 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 4.1445 0.4649 1.3577 31 1 4.2906 -1.0449 0.4263 32 1 6.2910 -2.9167 3.7764 33 1 6.1441 -1.4072 4.7081 34 1 8.9915 -5.3314 3.8138 35 1 9.5155 0.0316 3.7421 36 1 7.9256 0.3990 4.6016 37 1 8.1982 -1.6981 6.0034 38 1 9.7880 -2.0665 5.1443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849707363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:38 Heat of formation + Delta-G solvation = -159.679742 kcal Electronic energy + Delta-G solvation = -21557.668069 eV Core-core repulsion = 18106.791548 eV Total energy + Delta-G solvation = -3450.876521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.63908 -38.75028 -38.16536 -37.27220 -37.06527 -35.99790 -34.05024 -32.18240 -28.73458 -28.06829 -27.26474 -23.75377 -23.07222 -22.41906 -21.25264 -19.78186 -19.09011 -18.55908 -17.99114 -17.70635 -17.55703 -16.89225 -16.64839 -16.36475 -15.64419 -15.54857 -14.98807 -14.46850 -14.24274 -14.12774 -13.94864 -13.66180 -13.60864 -13.21859 -13.19237 -13.08026 -12.96253 -12.81472 -12.46344 -12.40709 -12.32417 -12.17050 -12.10142 -12.02858 -11.82635 -11.51784 -11.18210 -10.82255 -10.51910 -10.13172 -8.15713 -6.28155 -1.24704 0.89241 1.42217 1.43311 1.45981 1.51529 1.63658 2.41125 2.72273 2.92348 3.12904 3.26130 3.54935 3.58061 3.60453 3.89849 4.06877 4.14912 4.21905 4.31767 4.41888 4.60703 4.65960 4.67126 4.74377 4.78630 4.90299 4.94333 5.14857 5.15225 5.28828 5.33930 5.50262 5.57653 5.72399 6.30589 6.45235 6.77781 7.41370 8.93068 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.004062 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.781958 B = 6890.832912 C = 7283.553360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.531 4.531 3 C -0.164 4.164 4 S 2.417 3.583 5 O -0.976 6.976 6 O -0.964 6.964 7 C -0.626 4.626 8 C 0.470 3.530 9 O -0.552 6.552 10 O -0.330 6.330 11 C 0.119 3.881 12 C 0.002 3.998 13 C -0.507 4.507 14 H 0.060 0.940 15 C 0.021 3.979 16 N -0.911 5.911 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.270 1.270 21 C -0.174 4.174 22 C -0.148 4.148 23 H 0.071 0.929 24 H 0.117 0.883 25 H 0.067 0.933 26 H 0.178 0.822 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.213 0.787 31 H 0.207 0.793 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.261 0.739 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.467 13.470 -11.650 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.646 4.646 3 C -0.222 4.222 4 S 2.601 3.399 5 O -0.973 6.973 6 O -0.961 6.961 7 C -0.749 4.749 8 C 0.314 3.686 9 O -0.445 6.445 10 O -0.244 6.244 11 C 0.046 3.954 12 C 0.001 3.999 13 C -0.545 4.545 14 H 0.079 0.921 15 C -0.179 4.179 16 N -0.548 5.548 17 Si 0.780 3.220 18 H -0.191 1.191 19 H -0.213 1.213 20 H -0.195 1.195 21 C -0.211 4.211 22 C -0.185 4.185 23 H 0.090 0.910 24 H 0.135 0.865 25 H 0.086 0.914 26 H 0.196 0.804 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.230 0.770 31 H 0.225 0.775 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.009 12.631 -10.599 21.003 hybrid contribution 1.024 -0.854 -0.488 1.419 sum -11.985 11.778 -11.086 20.131 Atomic orbital electron populations 1.21868 0.89226 1.04300 1.06181 1.29841 1.07295 1.10402 1.17042 1.22065 1.03448 0.90291 1.06351 1.08451 0.76637 0.75592 0.79212 1.93521 1.82632 1.33421 1.87712 1.93502 1.77666 1.75752 1.49216 1.30831 1.25229 1.14547 1.04339 1.23073 0.82573 0.76954 0.85959 1.90767 1.66546 1.43037 1.44113 1.86494 1.20570 1.69372 1.47977 1.22743 0.94107 0.95177 0.83415 1.18877 0.87679 0.97583 0.95736 1.20631 1.37671 0.95471 1.00713 0.92138 1.25782 0.96612 0.97664 0.97867 1.70104 1.45443 1.08375 1.30914 0.85664 0.79594 0.77170 0.79574 1.19113 1.21294 1.19520 1.23040 1.03078 0.90711 1.04264 1.22500 1.00974 1.01185 0.93881 0.91039 0.86457 0.91360 0.80446 0.90705 0.88649 0.87173 0.77006 0.77541 0.93845 0.92884 0.92966 0.89188 0.88938 0.90531 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.19 71.98 0.66 -1.04 16 2 C -0.53 -5.57 3.35 30.59 0.10 -5.47 16 3 C -0.16 -0.99 8.90 71.98 0.64 -0.35 16 4 S 2.42 59.95 3.50 -56.49 -0.20 59.75 16 5 O -0.98 -33.75 17.95 -125.75 -2.26 -36.00 16 6 O -0.96 -31.21 17.91 -125.74 -2.25 -33.46 16 7 C -0.63 -13.78 5.79 71.24 0.41 -13.37 16 8 C 0.47 18.18 7.98 71.24 0.57 18.75 16 9 O -0.55 -25.83 15.37 24.44 0.38 -25.46 16 10 O -0.33 -14.27 10.16 -51.40 -0.52 -14.79 16 11 C 0.12 5.83 5.29 71.98 0.38 6.21 16 12 C 0.00 0.09 1.61 -52.93 -0.08 0.00 16 13 C -0.51 -27.38 8.77 25.60 0.22 -27.16 16 14 H 0.06 3.20 7.82 -2.91 -0.02 3.18 16 15 C 0.02 1.15 5.39 84.65 0.46 1.61 16 16 N -0.91 -52.45 12.93 21.45 0.28 -52.17 16 17 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 C -0.17 -7.16 9.96 30.62 0.30 -6.85 16 22 C -0.15 -6.80 9.43 30.62 0.29 -6.51 16 23 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.18 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 0.20 6.39 -2.39 -0.02 0.18 16 29 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.21 2.56 6.78 -2.39 -0.02 2.55 16 31 H 0.21 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.04 2.41 8.13 -2.39 -0.02 2.39 16 33 H 0.05 2.43 8.09 -2.39 -0.02 2.41 16 34 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 37 H 0.08 3.30 8.14 -2.38 -0.02 3.28 16 38 H 0.07 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -83.31 339.41 2.45 -80.86 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.04 Total: 10.66 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 3.96 Total: -34.18 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.28 Total: -52.17 kcal Atomic # 8 Polarization: -105.05 SS G_CDS: -4.65 Total: -109.71 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 59.95 SS G_CDS: -0.20 Total: 59.75 kcal Total: -83.31 2.45 -80.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849707363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.823 kcal (2) G-P(sol) polarization free energy of solvation -83.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds