Wall clock time and date at job start Tue Mar 31 2020 07:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47326 * 2 1 4 4 S 1.81398 * 109.47037 * 180.02562 * 3 2 1 5 5 O 1.42092 * 108.58032 * 65.51629 * 4 3 2 6 6 O 1.42099 * 108.58093 * 294.48316 * 4 3 2 7 7 C 1.81407 * 101.91700 * 180.02562 * 4 3 2 8 8 C 1.50703 * 109.46832 * 180.02562 * 7 4 3 9 9 O 1.20824 * 119.99868 * 359.97438 * 8 7 4 10 10 O 1.34232 * 119.99981 * 180.02562 * 8 7 4 11 11 C 1.45193 * 117.00307 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47629 * 179.97438 * 11 10 8 13 13 C 1.50698 * 115.55091 * 294.88972 * 12 11 10 14 14 H 1.07995 * 120.00548 * 95.15680 * 13 12 11 15 15 C 1.37887 * 119.99607 * 274.88498 * 13 12 11 16 16 N 1.31512 * 119.99742 * 6.38500 * 15 13 12 17 17 Si 1.86792 * 120.00001 * 186.38825 * 15 13 12 18 18 H 1.48497 * 109.47138 * 89.99854 * 17 15 13 19 19 H 1.48507 * 109.46983 * 210.00016 * 17 15 13 20 20 H 1.48507 * 109.47143 * 329.99898 * 17 15 13 21 21 C 1.53001 * 117.49567 * 80.55078 * 12 11 10 22 22 C 1.52997 * 117.50058 * 149.21087 * 12 11 10 23 23 H 1.08996 * 109.46974 * 60.00420 * 1 2 3 24 24 H 1.09008 * 109.47096 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47087 * 299.99653 * 1 2 3 26 26 H 1.09000 * 109.47239 * 239.99582 * 2 1 3 27 27 H 1.09003 * 109.46959 * 120.00472 * 2 1 3 28 28 H 1.09002 * 109.46790 * 59.99635 * 3 2 1 29 29 H 1.09003 * 109.46744 * 300.00144 * 3 2 1 30 30 H 1.09001 * 109.47313 * 60.00102 * 7 4 3 31 31 H 1.09000 * 109.47226 * 299.99618 * 7 4 3 32 32 H 1.09004 * 109.47351 * 59.98882 * 11 10 8 33 33 H 1.09010 * 109.46838 * 299.99816 * 11 10 8 34 34 H 0.97004 * 120.00151 * 179.97438 * 16 15 13 35 35 H 1.09003 * 117.50064 * 215.00337 * 21 12 11 36 36 H 1.08997 * 117.50444 * 0.02833 * 21 12 11 37 37 H 1.08997 * 117.50286 * 359.97438 * 22 12 11 38 38 H 1.09000 * 117.49777 * 144.98214 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4424 -0.0008 5 8 4.3062 0.8844 -1.2268 6 8 4.3073 0.8840 1.2248 7 6 4.2287 3.2173 0.0001 8 6 5.7227 3.4153 -0.0010 9 8 6.4590 2.4574 -0.0018 10 8 6.2353 4.6559 -0.0001 11 6 7.6827 4.7711 -0.0019 12 6 8.0767 6.2494 -0.0011 13 6 7.6896 7.0259 -1.2333 14 1 6.7693 7.5908 -1.2487 15 6 8.5133 7.0197 -2.3391 16 7 9.5711 6.2388 -2.3666 17 14 8.1266 8.1204 -3.7978 18 1 8.7938 9.4347 -3.6168 19 1 8.6206 7.4820 -5.0443 20 1 6.6580 8.3197 -3.8921 21 6 8.0451 6.9882 1.3383 22 6 9.3860 6.6312 0.6922 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.8014 3.6785 0.8906 31 1 3.8007 3.6795 -0.8894 32 1 8.0845 4.2887 -0.8929 33 1 8.0868 4.2865 0.8871 34 1 10.1504 6.2341 -3.1447 35 1 7.7444 8.0359 1.3283 36 1 7.7440 6.4210 2.2191 37 1 9.9666 5.8293 1.1482 38 1 9.9677 7.4438 0.2569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849711494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:53 Heat of formation + Delta-G solvation = -137.565717 kcal Electronic energy + Delta-G solvation = -21216.396794 eV Core-core repulsion = 17766.479209 eV Total energy + Delta-G solvation = -3449.917585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02709 -37.06207 -36.97460 -36.11627 -35.48164 -35.17370 -32.01677 -30.99377 -28.10476 -26.79021 -25.28329 -22.47161 -21.35298 -20.85484 -19.35436 -18.94079 -17.70618 -16.89763 -16.72817 -16.41320 -16.10656 -15.90380 -15.12996 -15.07186 -14.64997 -13.93610 -13.92331 -13.52792 -12.98501 -12.93753 -12.91481 -12.24936 -12.14156 -12.09523 -12.03135 -11.85237 -11.71810 -11.31082 -11.22685 -11.03877 -10.91179 -10.67309 -10.63844 -10.46070 -10.31582 -10.01218 -9.64875 -8.89636 -8.52830 -8.28228 -6.11861 -4.18070 -0.33133 2.38122 2.54584 2.83391 3.25569 3.33006 3.35215 3.66729 3.81240 4.18791 4.32458 4.34689 4.69879 4.70979 4.73541 4.96251 5.06710 5.14110 5.17636 5.22920 5.34068 5.55168 5.57565 5.75489 5.89487 6.16074 6.25665 6.43221 6.53551 6.66284 6.97480 7.03694 7.28361 7.38738 7.81276 8.03455 8.32622 8.83786 9.48297 10.97529 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.003756 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.618707 B = 7453.331205 C = 7987.079495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.618 4.618 4 S 2.446 3.554 5 O -0.916 6.916 6 O -0.919 6.919 7 C -0.633 4.633 8 C 0.483 3.517 9 O -0.510 6.510 10 O -0.324 6.324 11 C 0.111 3.889 12 C 0.036 3.964 13 C -0.494 4.494 14 H 0.064 0.936 15 C 0.069 3.931 16 N -0.879 5.879 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.205 4.205 22 C -0.143 4.143 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.820 -7.650 5.267 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.746 4.746 4 S 2.623 3.377 5 O -0.913 6.913 6 O -0.916 6.916 7 C -0.757 4.757 8 C 0.325 3.675 9 O -0.401 6.401 10 O -0.238 6.238 11 C 0.038 3.962 12 C 0.035 3.965 13 C -0.532 4.532 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.516 5.516 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.243 4.243 22 C -0.181 4.181 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.780 -8.606 5.141 18.695 hybrid contribution -0.577 1.431 -0.851 1.763 sum -16.358 -7.175 4.290 18.370 Atomic orbital electron populations 1.21730 0.93842 1.02398 1.02398 1.21284 0.98396 0.91747 1.04211 1.30464 1.25603 1.06625 1.11949 1.07636 0.77685 0.76394 0.75958 1.93598 1.78584 1.73515 1.45630 1.93583 1.78668 1.73595 1.45793 1.30655 1.00207 1.30388 1.14496 1.21771 0.88852 0.83448 0.73460 1.90782 1.61185 1.41734 1.46390 1.86500 1.28637 1.27408 1.81295 1.23124 0.72682 0.99507 1.00897 1.18781 0.97374 0.88889 0.91457 1.20382 1.06783 1.29520 0.96469 0.91826 1.25037 0.94960 0.95171 0.98325 1.69990 1.14819 1.36765 1.29977 0.86561 0.78723 0.80699 0.81849 1.20529 1.21151 1.19767 1.23024 1.03230 1.00786 0.97223 1.22555 0.90284 1.02223 1.03012 0.92186 0.91871 0.92218 0.89954 0.89996 0.84658 0.84588 0.81621 0.81395 0.89982 0.93690 0.92754 0.89981 0.91457 0.91488 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.85 5.94 -26.73 -0.16 -1.01 16 3 C -0.62 -3.99 5.81 37.16 0.22 -3.77 16 4 S 2.45 29.49 3.96 -107.50 -0.43 29.06 16 5 O -0.92 -14.79 17.95 -59.54 -1.07 -15.86 16 6 O -0.92 -14.26 17.95 -59.53 -1.07 -15.32 16 7 C -0.63 -7.39 6.40 36.01 0.23 -7.16 16 8 C 0.48 9.22 7.98 36.01 0.29 9.51 16 9 O -0.51 -11.31 15.37 -21.37 -0.33 -11.64 16 10 O -0.32 -7.00 10.16 -39.26 -0.40 -7.40 16 11 C 0.11 2.64 5.28 37.15 0.20 2.83 16 12 C 0.04 0.88 1.61 -155.67 -0.25 0.63 16 13 C -0.49 -13.30 8.77 -34.44 -0.30 -13.60 16 14 H 0.06 1.71 7.82 -52.49 -0.41 1.29 16 15 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 16 N -0.88 -24.68 12.93 55.43 0.72 -23.96 16 17 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 22 C -0.14 -3.29 9.43 -26.69 -0.25 -3.54 16 23 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.14 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.14 0.56 8.14 -51.92 -0.42 0.13 16 30 H 0.17 1.25 8.14 -51.92 -0.42 0.83 16 31 H 0.17 1.41 8.14 -51.92 -0.42 0.99 16 32 H 0.08 2.15 8.13 -51.93 -0.42 1.73 16 33 H 0.04 1.00 8.09 -51.92 -0.42 0.58 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 35 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -36.18 343.85 -8.32 -44.51 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.88 Total: -0.92 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -0.03 Total: -19.44 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.72 Total: -23.96 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -2.86 Total: -50.22 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 29.49 SS G_CDS: -0.43 Total: 29.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.18 -8.32 -44.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849711494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.060 kcal (2) G-P(sol) polarization free energy of solvation -36.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds