Wall clock time and date at job start Tue Mar 31 2020 07:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47326 * 2 1 4 4 S 1.81398 * 109.47037 * 180.02562 * 3 2 1 5 5 O 1.42092 * 108.58032 * 65.51629 * 4 3 2 6 6 O 1.42099 * 108.58093 * 294.48316 * 4 3 2 7 7 C 1.81407 * 101.91700 * 180.02562 * 4 3 2 8 8 C 1.50703 * 109.46832 * 180.02562 * 7 4 3 9 9 O 1.20824 * 119.99868 * 359.97438 * 8 7 4 10 10 O 1.34232 * 119.99981 * 180.02562 * 8 7 4 11 11 C 1.45193 * 117.00307 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47629 * 179.97438 * 11 10 8 13 13 C 1.50698 * 115.55091 * 294.88972 * 12 11 10 14 14 H 1.07995 * 120.00548 * 95.15680 * 13 12 11 15 15 C 1.37887 * 119.99607 * 274.88498 * 13 12 11 16 16 N 1.31512 * 119.99742 * 6.38500 * 15 13 12 17 17 Si 1.86792 * 120.00001 * 186.38825 * 15 13 12 18 18 H 1.48497 * 109.47138 * 89.99854 * 17 15 13 19 19 H 1.48507 * 109.46983 * 210.00016 * 17 15 13 20 20 H 1.48507 * 109.47143 * 329.99898 * 17 15 13 21 21 C 1.53001 * 117.49567 * 80.55078 * 12 11 10 22 22 C 1.52997 * 117.50058 * 149.21087 * 12 11 10 23 23 H 1.08996 * 109.46974 * 60.00420 * 1 2 3 24 24 H 1.09008 * 109.47096 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47087 * 299.99653 * 1 2 3 26 26 H 1.09000 * 109.47239 * 239.99582 * 2 1 3 27 27 H 1.09003 * 109.46959 * 120.00472 * 2 1 3 28 28 H 1.09002 * 109.46790 * 59.99635 * 3 2 1 29 29 H 1.09003 * 109.46744 * 300.00144 * 3 2 1 30 30 H 1.09001 * 109.47313 * 60.00102 * 7 4 3 31 31 H 1.09000 * 109.47226 * 299.99618 * 7 4 3 32 32 H 1.09004 * 109.47351 * 59.98882 * 11 10 8 33 33 H 1.09010 * 109.46838 * 299.99816 * 11 10 8 34 34 H 0.97004 * 120.00151 * 179.97438 * 16 15 13 35 35 H 1.09003 * 117.50064 * 215.00337 * 21 12 11 36 36 H 1.08997 * 117.50444 * 0.02833 * 21 12 11 37 37 H 1.08997 * 117.50286 * 359.97438 * 22 12 11 38 38 H 1.09000 * 117.49777 * 144.98214 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4424 -0.0008 5 8 4.3062 0.8844 -1.2268 6 8 4.3073 0.8840 1.2248 7 6 4.2287 3.2173 0.0001 8 6 5.7227 3.4153 -0.0010 9 8 6.4590 2.4574 -0.0018 10 8 6.2353 4.6559 -0.0001 11 6 7.6827 4.7711 -0.0019 12 6 8.0767 6.2494 -0.0011 13 6 7.6896 7.0259 -1.2333 14 1 6.7693 7.5908 -1.2487 15 6 8.5133 7.0197 -2.3391 16 7 9.5711 6.2388 -2.3666 17 14 8.1266 8.1204 -3.7978 18 1 8.7938 9.4347 -3.6168 19 1 8.6206 7.4820 -5.0443 20 1 6.6580 8.3197 -3.8921 21 6 8.0451 6.9882 1.3383 22 6 9.3860 6.6312 0.6922 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.8014 3.6785 0.8906 31 1 3.8007 3.6795 -0.8894 32 1 8.0845 4.2887 -0.8929 33 1 8.0868 4.2865 0.8871 34 1 10.1504 6.2341 -3.1447 35 1 7.7444 8.0359 1.3283 36 1 7.7440 6.4210 2.2191 37 1 9.9666 5.8293 1.1482 38 1 9.9677 7.4438 0.2569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849711494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:53 Heat of formation + Delta-G solvation = -163.245343 kcal Electronic energy + Delta-G solvation = -21217.510346 eV Core-core repulsion = 17766.479209 eV Total energy + Delta-G solvation = -3451.031137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.62631 -38.74928 -38.09929 -37.26039 -37.05032 -35.73523 -34.05589 -32.11555 -28.78516 -28.42707 -27.28824 -23.31382 -22.96535 -22.20748 -21.25602 -19.90023 -19.06193 -18.54268 -17.93114 -17.57440 -17.46245 -17.09593 -16.63550 -16.37236 -15.88518 -15.62906 -15.04706 -14.45012 -14.43969 -13.96692 -13.64496 -13.60766 -13.52052 -13.39158 -13.13014 -13.09676 -12.97618 -12.82117 -12.46219 -12.32300 -12.16762 -12.14043 -12.03827 -11.82511 -11.76117 -11.52600 -11.35569 -10.82947 -10.52783 -10.13492 -8.16415 -6.28782 -1.21399 0.91090 1.41398 1.42579 1.47847 1.52661 1.70343 2.40691 2.75115 2.98891 3.12357 3.27416 3.55508 3.61104 3.79270 3.95588 4.06974 4.21704 4.26431 4.31644 4.41943 4.49538 4.60431 4.70678 4.74731 4.77207 4.93917 5.13586 5.14888 5.15175 5.34420 5.39343 5.50478 5.57400 5.72106 6.30345 6.46322 6.77475 7.40749 8.92545 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.023711 B = 0.003756 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.618707 B = 7453.331205 C = 7987.079495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C -0.572 4.572 4 S 2.424 3.576 5 O -0.975 6.975 6 O -0.970 6.970 7 C -0.623 4.623 8 C 0.468 3.532 9 O -0.552 6.552 10 O -0.331 6.331 11 C 0.120 3.880 12 C 0.002 3.998 13 C -0.507 4.507 14 H 0.060 0.940 15 C 0.020 3.980 16 N -0.911 5.911 17 Si 0.956 3.044 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.264 1.264 21 C -0.174 4.174 22 C -0.148 4.148 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.215 0.785 31 H 0.207 0.793 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.261 0.739 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.329 -6.318 5.814 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.706 4.706 4 S 2.609 3.391 5 O -0.972 6.972 6 O -0.967 6.967 7 C -0.747 4.747 8 C 0.312 3.688 9 O -0.445 6.445 10 O -0.246 6.246 11 C 0.047 3.953 12 C 0.001 3.999 13 C -0.544 4.544 14 H 0.079 0.921 15 C -0.180 4.180 16 N -0.548 5.548 17 Si 0.781 3.219 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.188 1.188 21 C -0.211 4.211 22 C -0.186 4.186 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.196 0.804 29 H 0.192 0.808 30 H 0.232 0.768 31 H 0.224 0.776 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.247 -7.272 5.700 21.350 hybrid contribution 0.386 0.960 -0.982 1.427 sum -18.861 -6.312 4.717 20.441 Atomic orbital electron populations 1.21751 0.91836 1.03130 1.03534 1.21495 0.99970 0.92069 1.03897 1.30168 1.17071 1.07342 1.15989 1.07982 0.80929 0.76234 0.74004 1.93527 1.81619 1.74904 1.47177 1.93518 1.81539 1.74750 1.46862 1.30798 0.94465 1.30782 1.18647 1.23150 0.91914 0.81943 0.71765 1.90767 1.63140 1.42607 1.47936 1.86494 1.27065 1.29169 1.81847 1.22720 0.74398 0.98892 0.99337 1.18880 0.99044 0.89354 0.92592 1.20668 1.06641 1.29497 0.97630 0.92147 1.25797 0.94898 0.96373 1.00966 1.70113 1.15839 1.38217 1.30660 0.85590 0.78917 0.78971 0.78428 1.19817 1.21377 1.18787 1.23041 1.00859 1.01052 0.96178 1.22498 0.90579 1.02085 1.03397 0.91164 0.91568 0.90918 0.90753 0.90439 0.80435 0.80848 0.76765 0.77612 0.93878 0.92938 0.92971 0.89189 0.88946 0.90532 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.91 71.98 0.71 -0.32 16 2 C -0.14 -1.57 5.94 30.59 0.18 -1.39 16 3 C -0.57 -4.81 5.81 71.98 0.42 -4.39 16 4 S 2.42 55.90 3.96 -56.49 -0.22 55.68 16 5 O -0.98 -32.41 17.95 -125.74 -2.26 -34.67 16 6 O -0.97 -30.46 17.95 -125.74 -2.26 -32.72 16 7 C -0.62 -12.83 6.40 71.24 0.46 -12.38 16 8 C 0.47 17.82 7.98 71.24 0.57 18.39 16 9 O -0.55 -25.52 15.37 24.48 0.38 -25.14 16 10 O -0.33 -14.27 10.16 -51.44 -0.52 -14.79 16 11 C 0.12 5.86 5.28 71.98 0.38 6.24 16 12 C 0.00 0.09 1.61 -52.93 -0.08 0.00 16 13 C -0.51 -27.38 8.77 25.60 0.22 -27.15 16 14 H 0.06 3.21 7.82 -2.91 -0.02 3.19 16 15 C 0.02 1.09 5.39 84.66 0.46 1.55 16 16 N -0.91 -52.44 12.93 21.45 0.28 -52.16 16 17 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 21 C -0.17 -7.18 9.96 30.62 0.30 -6.88 16 22 C -0.15 -6.81 9.43 30.62 0.29 -6.52 16 23 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 25 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.18 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.17 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.22 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.21 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.04 2.39 8.13 -2.39 -0.02 2.37 16 33 H 0.05 2.40 8.09 -2.38 -0.02 2.39 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.08 3.30 8.14 -2.39 -0.02 3.29 16 38 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -84.60 343.85 2.36 -82.24 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.04 Total: 9.58 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 3.91 Total: -32.84 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.28 Total: -52.16 kcal Atomic # 8 Polarization: -102.66 SS G_CDS: -4.66 Total: -107.32 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 55.90 SS G_CDS: -0.22 Total: 55.68 kcal Total: -84.60 2.36 -82.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849711494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.008 kcal (2) G-P(sol) polarization free energy of solvation -84.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds