Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00267 * 2 1 4 4 H 1.48500 * 109.46825 * 270.00157 * 3 2 1 5 5 H 1.48495 * 109.46790 * 30.00115 * 3 2 1 6 6 H 1.48495 * 109.46848 * 150.00467 * 3 2 1 7 7 C 1.37880 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00000 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99715 * 359.97438 * 7 2 1 10 10 S 1.80999 * 109.46856 * 179.97438 * 9 7 2 11 11 C 1.76202 * 100.00248 * 179.97438 * 10 9 7 12 12 N 1.31282 * 126.48003 * 359.97438 * 11 10 9 13 13 N 1.28522 * 109.85847 * 179.97438 * 12 11 10 14 14 C 1.30302 * 110.07585 * 359.97438 * 13 12 11 15 15 C 1.50706 * 126.33969 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46982 * 90.02650 * 15 14 13 17 17 C 1.38234 * 120.00257 * 90.00130 * 16 15 14 18 18 C 1.38238 * 119.99675 * 180.27927 * 17 16 15 19 19 C 1.38228 * 120.00120 * 359.47825 * 18 17 16 20 20 C 1.38234 * 120.00000 * 0.52176 * 19 18 17 21 21 C 1.38234 * 119.99503 * 270.01730 * 16 15 14 22 22 N 1.36538 * 126.48705 * 180.24352 * 11 10 9 23 23 N 1.36601 * 127.14271 * 0.02562 * 22 11 10 24 24 H 0.97003 * 119.99511 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47301 * 60.00433 * 9 7 2 26 26 H 1.08997 * 109.47381 * 299.99678 * 9 7 2 27 27 H 1.08988 * 109.47229 * 330.02105 * 15 14 13 28 28 H 1.09000 * 109.46558 * 210.02085 * 15 14 13 29 29 H 1.08002 * 119.99744 * 359.97438 * 17 16 15 30 30 H 1.08004 * 119.99577 * 179.72816 * 18 17 16 31 31 H 1.07999 * 119.99932 * 180.24104 * 19 18 17 32 32 H 1.08001 * 120.00310 * 179.72161 * 20 19 18 33 33 H 1.07997 * 120.00460 * 0.02562 * 21 16 15 34 34 H 1.00904 * 110.99595 * 270.14966 * 23 22 11 35 35 H 1.00893 * 110.99990 * 34.10113 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 16 2.4271 -3.8749 -0.0021 11 6 1.3070 -5.2351 -0.0010 12 7 -0.0041 -5.1666 0.0009 13 7 -0.5031 -6.3510 0.0006 14 6 0.4510 -7.2384 -0.0021 15 6 0.2782 -8.7355 -0.0028 16 6 0.2182 -9.2335 -1.4239 17 6 1.3799 -9.5993 -2.0778 18 6 1.3253 -10.0506 -3.3833 19 6 0.1080 -10.1465 -4.0312 20 6 -1.0536 -9.7807 -3.3773 21 6 -0.9986 -9.3243 -2.0736 22 7 1.6383 -6.5597 0.0031 23 7 2.8948 -7.0956 0.0076 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 -0.6466 -8.9947 0.5124 28 1 1.1216 -9.1988 0.5092 29 1 2.3306 -9.5277 -1.5704 30 1 2.2334 -10.3322 -3.8957 31 1 0.0651 -10.5028 -5.0498 32 1 -2.0043 -9.8513 -3.8850 33 1 -1.9061 -9.0379 -1.5630 34 1 3.2307 -7.2375 -0.9332 35 1 3.5320 -6.5188 0.5360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849993933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = 113.051530 kcal Electronic energy + Delta-G solvation = -19538.819609 eV Core-core repulsion = 16471.664026 eV Total energy + Delta-G solvation = -3067.155583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.62764 -39.32717 -36.24759 -33.85116 -33.24818 -31.02407 -30.25548 -29.44707 -28.66957 -26.80812 -23.35998 -22.84677 -22.42009 -21.99805 -20.61154 -18.42657 -17.45513 -16.75621 -16.59496 -16.07536 -15.46080 -15.17404 -15.07017 -14.73640 -14.30852 -13.54795 -13.34316 -13.22195 -12.61920 -12.49417 -12.41937 -12.33420 -11.53512 -11.34412 -11.31436 -11.09981 -10.96047 -10.86207 -10.57362 -10.17939 -9.77338 -9.61694 -9.42270 -9.30367 -9.04990 -8.89487 -8.65820 -6.99651 -6.24929 -4.34181 1.14698 1.27440 1.66427 1.91089 2.49019 3.10829 3.21749 3.24420 3.28065 3.35271 3.61652 4.27274 4.31093 4.64469 4.66378 4.85195 4.87124 5.00885 5.09931 5.11330 5.35408 5.46114 5.56180 5.68346 5.80009 5.83402 5.94947 6.21895 6.30748 6.37670 6.46041 6.49276 6.85887 7.04449 7.15597 7.55080 7.61454 7.86168 8.66225 8.96258 9.29795 10.85264 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.003344 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.174514 B = 8372.165243 C = 8542.481244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.086 3.914 10 S -0.068 6.068 11 C 0.146 3.854 12 N -0.277 5.277 13 N -0.280 5.280 14 C 0.199 3.801 15 C 0.016 3.984 16 C -0.081 4.081 17 C -0.112 4.112 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.101 4.101 22 N -0.314 5.314 23 N -0.584 5.584 24 H 0.268 0.732 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.359 0.641 35 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.194 -20.722 -3.993 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.085 0.915 9 C -0.061 4.061 10 S 0.160 5.840 11 C -0.229 4.229 12 N -0.121 5.121 13 N -0.121 5.121 14 C -0.071 4.071 15 C -0.024 4.024 16 C -0.082 4.082 17 C -0.130 4.130 18 C -0.141 4.141 19 C -0.140 4.140 20 C -0.138 4.138 21 C -0.119 4.119 22 N -0.098 5.098 23 N -0.214 5.214 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.176 0.824 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.485 -20.605 -3.603 21.206 hybrid contribution 0.858 1.227 -0.569 1.602 sum 4.343 -19.378 -4.172 20.292 Atomic orbital electron populations 1.69982 1.06112 1.27623 1.47872 1.24943 0.94981 0.99195 0.94282 0.86326 0.79657 0.82085 0.78422 1.20233 1.20779 1.19527 1.20568 0.93244 0.88547 1.54627 0.91484 1.21333 0.93413 0.88671 1.02671 1.85342 1.11727 0.95300 1.91626 1.27930 0.98733 0.89057 1.07186 1.74866 1.03155 1.14139 1.19957 1.74067 1.24638 0.95256 1.18094 1.24473 0.79823 0.96896 1.05896 1.18866 1.05088 0.84301 0.94144 1.19684 0.93698 0.99349 0.95510 1.21081 0.97811 0.99187 0.94915 1.21121 0.97847 1.00261 0.94912 1.21167 0.92802 1.00221 0.99821 1.21170 0.98478 0.99296 0.94896 1.21160 0.97720 0.98141 0.94915 1.45172 1.03531 1.03619 1.57500 1.59771 0.93321 1.47155 1.21139 0.92172 0.92810 0.92727 0.87695 0.88334 0.85912 0.86138 0.86240 0.85983 0.85472 0.82419 0.80590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 3 Si 0.91 20.82 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.53 -14.48 9.13 -34.44 -0.31 -14.79 16 8 H 0.07 1.77 7.71 -52.49 -0.40 1.36 16 9 C 0.09 2.26 4.99 36.01 0.18 2.44 16 10 S -0.07 -1.41 21.90 -107.50 -2.35 -3.76 16 11 C 0.15 2.95 8.13 -88.34 -0.72 2.23 16 12 N -0.28 -6.35 11.60 30.68 0.36 -6.00 16 13 N -0.28 -5.67 12.18 33.00 0.40 -5.27 16 14 C 0.20 3.22 7.41 -153.99 -1.14 2.08 16 15 C 0.02 0.18 5.89 -29.03 -0.17 0.01 16 16 C -0.08 -0.92 5.12 -104.62 -0.54 -1.45 16 17 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 18 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 19 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 20 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 21 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 22 N -0.31 -5.02 3.81 -9.93 -0.04 -5.06 16 23 N -0.58 -6.53 10.39 60.35 0.63 -5.91 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.05 1.52 8.14 -51.92 -0.42 1.10 16 26 H 0.05 1.54 8.14 -51.92 -0.42 1.12 16 27 H 0.10 1.08 8.08 -51.94 -0.42 0.66 16 28 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 29 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.36 3.32 9.21 -181.36 -1.67 1.65 16 35 H 0.38 3.92 8.81 -181.37 -1.60 2.32 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -32.54 326.47 -11.74 -44.28 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.61 Total: 1.30 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -4.76 Total: -15.42 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 2.08 Total: -47.12 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.35 Total: -3.76 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.54 -11.74 -44.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849993933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.332 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds