Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00267 * 2 1 4 4 H 1.48500 * 109.46825 * 270.00157 * 3 2 1 5 5 H 1.48495 * 109.46790 * 30.00115 * 3 2 1 6 6 H 1.48495 * 109.46848 * 150.00467 * 3 2 1 7 7 C 1.37880 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00000 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99715 * 359.97438 * 7 2 1 10 10 S 1.80999 * 109.46856 * 179.97438 * 9 7 2 11 11 C 1.76202 * 100.00248 * 179.97438 * 10 9 7 12 12 N 1.31282 * 126.48003 * 359.97438 * 11 10 9 13 13 N 1.28522 * 109.85847 * 179.97438 * 12 11 10 14 14 C 1.30302 * 110.07585 * 359.97438 * 13 12 11 15 15 C 1.50706 * 126.33969 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46982 * 90.02650 * 15 14 13 17 17 C 1.38234 * 120.00257 * 90.00130 * 16 15 14 18 18 C 1.38238 * 119.99675 * 180.27927 * 17 16 15 19 19 C 1.38228 * 120.00120 * 359.47825 * 18 17 16 20 20 C 1.38234 * 120.00000 * 0.52176 * 19 18 17 21 21 C 1.38234 * 119.99503 * 270.01730 * 16 15 14 22 22 N 1.36538 * 126.48705 * 180.24352 * 11 10 9 23 23 N 1.36601 * 127.14271 * 0.02562 * 22 11 10 24 24 H 0.97003 * 119.99511 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47301 * 60.00433 * 9 7 2 26 26 H 1.08997 * 109.47381 * 299.99678 * 9 7 2 27 27 H 1.08988 * 109.47229 * 330.02105 * 15 14 13 28 28 H 1.09000 * 109.46558 * 210.02085 * 15 14 13 29 29 H 1.08002 * 119.99744 * 359.97438 * 17 16 15 30 30 H 1.08004 * 119.99577 * 179.72816 * 18 17 16 31 31 H 1.07999 * 119.99932 * 180.24104 * 19 18 17 32 32 H 1.08001 * 120.00310 * 179.72161 * 20 19 18 33 33 H 1.07997 * 120.00460 * 0.02562 * 21 16 15 34 34 H 1.00904 * 110.99595 * 270.14966 * 23 22 11 35 35 H 1.00893 * 110.99990 * 34.10113 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 16 2.4271 -3.8749 -0.0021 11 6 1.3070 -5.2351 -0.0010 12 7 -0.0041 -5.1666 0.0009 13 7 -0.5031 -6.3510 0.0006 14 6 0.4510 -7.2384 -0.0021 15 6 0.2782 -8.7355 -0.0028 16 6 0.2182 -9.2335 -1.4239 17 6 1.3799 -9.5993 -2.0778 18 6 1.3253 -10.0506 -3.3833 19 6 0.1080 -10.1465 -4.0312 20 6 -1.0536 -9.7807 -3.3773 21 6 -0.9986 -9.3243 -2.0736 22 7 1.6383 -6.5597 0.0031 23 7 2.8948 -7.0956 0.0076 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 -0.6466 -8.9947 0.5124 28 1 1.1216 -9.1988 0.5092 29 1 2.3306 -9.5277 -1.5704 30 1 2.2334 -10.3322 -3.8957 31 1 0.0651 -10.5028 -5.0498 32 1 -2.0043 -9.8513 -3.8850 33 1 -1.9061 -9.0379 -1.5630 34 1 3.2307 -7.2375 -0.9332 35 1 3.5320 -6.5188 0.5360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849993933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = 94.020035 kcal Electronic energy + Delta-G solvation = -19539.644876 eV Core-core repulsion = 16471.664026 eV Total energy + Delta-G solvation = -3067.980851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.05568 -40.10180 -37.50504 -35.35532 -34.82386 -31.77520 -31.53271 -30.73053 -30.67625 -27.86878 -25.35544 -24.17670 -23.40325 -23.03948 -21.71508 -19.80524 -18.63048 -18.48156 -17.72325 -17.55872 -16.69181 -16.45736 -16.03952 -15.97793 -15.57620 -15.01920 -14.56976 -14.42009 -14.26869 -14.10160 -13.47466 -13.30689 -13.06441 -12.77328 -12.71982 -12.54751 -12.29134 -12.15872 -11.86477 -11.74172 -11.65928 -11.26567 -11.08904 -10.73645 -10.61134 -9.81271 -9.70238 -8.65959 -8.34984 -6.53810 0.06300 0.31424 0.51018 0.56240 1.20306 1.36095 1.42445 1.43667 1.56554 1.62961 2.35164 2.78256 2.99730 3.21889 3.67150 3.81974 3.87792 4.11769 4.16936 4.29955 4.32712 4.56677 4.59074 4.68980 4.81701 4.84364 4.92361 4.97899 5.14138 5.18064 5.49195 5.53599 5.56026 5.62804 5.68024 5.74997 6.11289 6.36261 6.55263 7.16414 7.48728 8.77119 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.003344 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.174514 B = 8372.165243 C = 8542.481244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.984 3.016 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.078 0.922 9 C 0.083 3.917 10 S -0.007 6.007 11 C 0.122 3.878 12 N -0.328 5.328 13 N -0.322 5.322 14 C 0.225 3.775 15 C 0.020 3.980 16 C -0.097 4.097 17 C -0.115 4.115 18 C -0.128 4.128 19 C -0.126 4.126 20 C -0.133 4.133 21 C -0.121 4.121 22 N -0.305 5.305 23 N -0.565 5.565 24 H 0.272 0.728 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.375 0.625 35 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 -22.157 -4.578 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.586 4.586 8 H 0.096 0.904 9 C -0.065 4.065 10 S 0.221 5.779 11 C -0.255 4.255 12 N -0.172 5.172 13 N -0.161 5.161 14 C -0.046 4.046 15 C -0.020 4.020 16 C -0.098 4.098 17 C -0.133 4.133 18 C -0.146 4.146 19 C -0.144 4.144 20 C -0.151 4.151 21 C -0.140 4.140 22 N -0.087 5.087 23 N -0.198 5.198 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.133 0.867 28 H 0.143 0.857 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.140 0.860 34 H 0.194 0.806 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.133 -22.075 -4.194 23.292 hybrid contribution 0.042 1.431 -0.435 1.496 sum 6.175 -20.644 -4.629 22.040 Atomic orbital electron populations 1.70132 1.08148 1.28823 1.48885 1.26029 0.95807 1.03434 0.93361 0.85169 0.78540 0.76803 0.78882 1.19275 1.20406 1.18038 1.20957 0.93789 0.89333 1.54515 0.90438 1.20889 0.94396 0.91974 0.99282 1.84635 1.08535 0.92641 1.92099 1.27855 0.98318 0.90795 1.08516 1.74757 1.04901 1.16121 1.21379 1.73970 1.26368 0.95191 1.20620 1.25336 0.78977 0.98281 1.02008 1.19119 1.06805 0.80888 0.95148 1.19701 0.94259 1.00544 0.95333 1.21346 0.98052 0.98615 0.95316 1.21487 0.98811 0.99504 0.94814 1.21522 0.92612 0.99438 1.00856 1.21427 0.99686 0.99304 0.94694 1.21319 0.97926 0.98982 0.95733 1.45231 1.05350 1.01935 1.56176 1.59930 0.91630 1.45799 1.22462 0.91944 0.96401 0.96265 0.86658 0.85708 0.84028 0.83671 0.84076 0.84707 0.85961 0.80553 0.79670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.60 13.29 21.45 0.28 -55.32 16 2 C 0.02 0.88 5.46 84.66 0.46 1.34 16 3 Si 0.98 42.62 29.54 68.60 2.03 44.65 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.55 -30.41 9.13 25.60 0.23 -30.18 16 8 H 0.08 4.05 7.71 -2.91 -0.02 4.02 16 9 C 0.08 4.55 4.99 71.24 0.36 4.90 16 10 S -0.01 -0.31 21.90 -56.49 -1.24 -1.54 16 11 C 0.12 4.98 8.13 179.55 1.46 6.44 16 12 N -0.33 -15.64 11.60 -56.85 -0.66 -16.30 16 13 N -0.32 -13.37 12.18 -49.52 -0.60 -13.97 16 14 C 0.22 7.10 7.41 137.63 1.02 8.12 16 15 C 0.02 0.42 5.89 29.10 0.17 0.59 16 16 C -0.10 -2.03 5.12 -19.87 -0.10 -2.14 16 17 C -0.12 -2.01 9.70 22.27 0.22 -1.79 16 18 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 19 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 20 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 21 C -0.12 -2.68 9.70 22.27 0.22 -2.47 16 22 N -0.30 -9.35 3.81 -185.32 -0.71 -10.05 16 23 N -0.57 -11.01 10.39 37.02 0.38 -10.63 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.02 1.07 8.14 -2.40 -0.02 1.05 16 26 H 0.02 1.15 8.14 -2.40 -0.02 1.13 16 27 H 0.12 2.21 8.08 -2.39 -0.02 2.20 16 28 H 0.12 1.98 8.09 -2.39 -0.02 1.96 16 29 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 31 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.38 5.62 9.21 -210.55 -1.94 3.68 16 35 H 0.38 6.85 8.81 -210.56 -1.85 4.99 16 Total: -1.00 -74.02 326.47 1.54 -72.49 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -2.66 Total: 11.94 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 4.71 Total: -21.27 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -1.30 Total: -106.26 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.24 Total: -1.54 kcal Total: -74.02 1.54 -72.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849993933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.507 kcal (2) G-P(sol) polarization free energy of solvation -74.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds