Wall clock time and date at job start Tue Mar 31 2020 08:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00130 * 2 1 4 4 H 1.48505 * 109.46848 * 269.99528 * 3 2 1 5 5 H 1.48499 * 109.47401 * 29.99299 * 3 2 1 6 6 H 1.48500 * 109.47363 * 149.99871 * 3 2 1 7 7 C 1.37878 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00361 * 173.68817 * 7 2 1 9 9 C 1.50710 * 119.99886 * 353.69455 * 7 2 1 10 10 C 1.53003 * 115.54740 * 85.64665 * 9 7 2 11 11 S 1.81394 * 109.47206 * 65.33331 * 10 9 7 12 12 C 1.81396 * 103.00152 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47348 * 179.97438 * 12 11 10 14 14 C 1.38265 * 119.98136 * 270.02622 * 13 12 11 15 15 C 1.38294 * 120.04223 * 180.02562 * 14 13 12 16 16 C 1.37972 * 119.91970 * 359.97438 * 15 14 13 17 17 C 1.38593 * 120.03767 * 359.97438 * 16 15 14 18 18 C 1.37972 * 120.04333 * 0.02562 * 17 16 15 19 19 C 1.51084 * 107.27506 * 180.27076 * 17 16 15 20 20 O 1.44113 * 105.86308 * 341.92705 * 19 17 16 21 21 C 1.43948 * 104.85729 * 28.79587 * 20 19 17 22 22 C 1.52998 * 117.49669 * 231.31971 * 9 7 2 23 23 C 1.53002 * 117.49543 * 299.97555 * 9 7 2 24 24 H 0.96997 * 119.99810 * 355.02091 * 1 2 3 25 25 H 1.08994 * 109.47095 * 305.33053 * 10 9 7 26 26 H 1.09004 * 109.46411 * 185.32959 * 10 9 7 27 27 H 1.09004 * 109.46984 * 59.99775 * 12 11 10 28 28 H 1.08998 * 109.47391 * 299.99985 * 12 11 10 29 29 H 1.07998 * 119.98064 * 359.97438 * 14 13 12 30 30 H 1.07999 * 120.04524 * 179.97438 * 15 14 13 31 31 H 1.08001 * 120.04254 * 179.97438 * 18 17 16 32 32 H 1.09003 * 110.15439 * 101.14047 * 19 17 16 33 33 H 1.08996 * 110.15506 * 222.89472 * 19 17 16 34 34 H 1.09003 * 110.15390 * 212.21625 * 21 20 19 35 35 H 1.09001 * 110.21413 * 90.49850 * 21 20 19 36 36 H 1.08994 * 117.49583 * 215.00452 * 22 9 7 37 37 H 1.09005 * 117.49927 * 0.02562 * 22 9 7 38 38 H 1.08995 * 117.49939 * 359.97438 * 23 9 7 39 39 H 1.08999 * 117.49445 * 144.97365 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0796 -1.1970 -0.1023 9 6 1.2578 -2.4952 0.1445 10 6 0.7095 -3.0885 -1.1549 11 16 2.0892 -3.5561 -2.2357 12 6 1.2525 -4.2279 -3.6982 13 6 2.2811 -4.6677 -4.7078 14 6 2.7369 -3.7775 -5.6625 15 6 3.6806 -4.1800 -6.5899 16 6 4.1670 -5.4708 -6.5611 17 6 3.7109 -6.3628 -5.6034 18 6 2.7695 -5.9613 -4.6781 19 6 4.4303 -7.6717 -5.8307 20 8 4.9540 -7.6057 -7.1717 21 6 5.1770 -6.2041 -7.4123 22 6 1.7409 -3.4718 1.2186 23 6 0.4342 -2.6999 1.4175 24 1 -0.4850 0.8369 0.0729 25 1 0.0881 -2.3481 -1.6586 26 1 0.1111 -3.9708 -0.9272 27 1 0.6173 -3.4592 -4.1385 28 1 0.6407 -5.0817 -3.4067 29 1 2.3552 -2.7675 -5.6845 30 1 4.0363 -3.4848 -7.3360 31 1 2.4138 -6.6565 -3.9321 32 1 5.2430 -7.7832 -5.1129 33 1 3.7326 -8.5043 -5.7412 34 1 5.0180 -5.9740 -8.4658 35 1 6.1889 -5.9275 -7.1165 36 1 1.6681 -4.5371 0.9995 37 1 2.5985 -3.1731 1.8214 38 1 0.4327 -1.8937 2.1511 39 1 -0.4986 -3.2569 1.3293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853770409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:16 Heat of formation + Delta-G solvation = 4.294689 kcal Electronic energy + Delta-G solvation = -19694.455028 eV Core-core repulsion = 16693.830987 eV Total energy + Delta-G solvation = -3000.624041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.108 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.74380 -37.72592 -36.57879 -32.78748 -31.94683 -31.58927 -28.77459 -27.73859 -26.88652 -25.31704 -24.06451 -21.82765 -21.13373 -20.90176 -19.19703 -16.77536 -16.53398 -16.37652 -16.07634 -15.41368 -15.12305 -14.63762 -14.41609 -14.14815 -13.81466 -13.47297 -13.28515 -13.16263 -12.75580 -12.69873 -12.53711 -12.00941 -11.82341 -11.60525 -11.21670 -11.00047 -10.95000 -10.90837 -10.48264 -10.28871 -10.15326 -9.66783 -9.44739 -8.89469 -8.83460 -8.48593 -8.38233 -8.02195 -6.84368 -6.05948 -4.10990 1.01921 1.27020 2.44208 3.29644 3.36574 3.41042 3.44469 3.70708 3.72866 4.05744 4.41246 4.47011 4.76055 4.86695 5.07858 5.16251 5.19741 5.23267 5.29853 5.36794 5.37717 5.40363 5.56979 5.67559 5.84436 5.94743 5.98860 6.15574 6.19058 6.25146 6.37787 6.50675 6.51296 6.55724 6.71673 6.79027 6.84575 7.04714 7.38418 7.47031 7.87548 8.38490 8.90939 9.55229 11.03206 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.023315 B = 0.003511 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.640980 B = 7972.545071 C = 8613.819766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.484 4.484 8 H 0.062 0.938 9 C 0.056 3.944 10 C -0.029 4.029 11 S -0.232 6.232 12 C -0.067 4.067 13 C -0.048 4.048 14 C -0.097 4.097 15 C -0.092 4.092 16 C -0.139 4.139 17 C -0.135 4.135 18 C -0.078 4.078 19 C 0.093 3.907 20 O -0.364 6.364 21 C 0.093 3.907 22 C -0.205 4.205 23 C -0.148 4.148 24 H 0.259 0.741 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 -11.356 -11.928 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.054 3.946 10 C -0.178 4.178 11 S -0.002 6.002 12 C -0.214 4.214 13 C -0.050 4.050 14 C -0.116 4.116 15 C -0.110 4.110 16 C -0.140 4.140 17 C -0.135 4.135 18 C -0.098 4.098 19 C 0.016 3.984 20 O -0.283 6.283 21 C 0.016 3.984 22 C -0.242 4.242 23 C -0.188 4.188 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.499 -11.299 -11.945 17.337 hybrid contribution -1.105 1.123 0.079 1.577 sum 4.394 -10.176 -11.866 16.238 Atomic orbital electron populations 1.70009 1.05861 1.26795 1.49248 1.24937 0.94772 0.98868 0.94506 0.86662 0.80046 0.83498 0.78232 1.20556 1.21277 1.19826 1.20388 0.92927 0.88482 1.50366 0.92006 1.18438 0.98112 0.93902 0.84155 1.23133 0.95483 1.00401 0.98744 1.87147 1.17850 1.80056 1.15102 1.22308 0.98624 1.03335 0.97160 1.19287 0.97262 0.93273 0.95136 1.21083 0.96755 0.99620 0.94173 1.20327 0.97073 0.94248 0.99331 1.20983 0.99108 0.95229 0.98715 1.20916 0.98443 0.96891 0.97236 1.20230 0.95990 0.95771 0.97803 1.21758 0.96850 0.95158 0.84604 1.89094 1.85000 1.23297 1.30911 1.21710 0.96697 0.80345 0.99602 1.23019 0.98406 0.95794 1.07014 1.22577 0.92199 1.01187 1.02857 0.93083 0.89808 0.93443 0.89530 0.90018 0.84994 0.85663 0.85547 0.90418 0.88589 0.88709 0.90611 0.91445 0.90285 0.89788 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.40 12.90 55.43 0.71 -23.68 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 21.04 29.55 -169.99 -5.02 16.01 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.48 -13.01 8.49 -34.43 -0.29 -13.30 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.06 1.34 1.34 -155.65 -0.21 1.13 16 10 C -0.03 -0.64 5.80 37.16 0.22 -0.43 16 11 S -0.23 -4.57 21.41 -107.50 -2.30 -6.87 16 12 C -0.07 -1.01 6.07 36.00 0.22 -0.79 16 13 C -0.05 -0.68 5.14 -104.59 -0.54 -1.22 16 14 C -0.10 -1.27 9.70 -39.55 -0.38 -1.65 16 15 C -0.09 -1.07 10.04 -39.66 -0.40 -1.47 16 16 C -0.14 -1.64 6.32 -104.40 -0.66 -2.30 16 17 C -0.13 -1.64 6.32 -104.40 -0.66 -2.30 16 18 C -0.08 -1.01 9.70 -39.66 -0.38 -1.40 16 19 C 0.09 0.95 7.63 36.19 0.28 1.23 16 20 O -0.36 -4.19 11.73 -35.23 -0.41 -4.61 16 21 C 0.09 0.92 7.63 36.19 0.28 1.19 16 22 C -0.20 -4.45 9.96 -26.70 -0.27 -4.71 16 23 C -0.15 -3.40 9.40 -26.69 -0.25 -3.65 16 24 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 25 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 26 H 0.05 0.94 8.09 -51.92 -0.42 0.52 16 27 H 0.09 1.28 8.08 -51.92 -0.42 0.86 16 28 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 29 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 38 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -29.00 343.70 -10.87 -39.87 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.88 Total: 1.92 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -3.15 Total: -27.82 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.71 Total: -23.68 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.41 Total: -4.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -4.57 SS G_CDS: -2.30 Total: -6.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.00 -10.87 -39.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853770409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.166 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds