Wall clock time and date at job start Tue Mar 31 2020 08:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86810 * 119.99790 * 2 1 4 4 H 1.48500 * 109.47012 * 272.59721 * 3 2 1 5 5 H 1.48500 * 109.46962 * 32.59782 * 3 2 1 6 6 H 1.48497 * 109.46990 * 152.59973 * 3 2 1 7 7 C 1.39907 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99779 * 347.76883 * 7 2 1 9 9 C 1.41148 * 119.99960 * 167.77560 * 7 2 1 10 10 C 1.40867 * 120.16190 * 148.77842 * 9 7 2 11 11 C 1.36376 * 119.82679 * 179.97438 * 10 9 7 12 12 C 1.39478 * 120.16947 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.83323 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99912 * 35.45658 * 13 12 11 15 15 O 1.21281 * 119.99960 * 355.59486 * 14 13 12 16 16 C 1.50701 * 120.00029 * 175.59744 * 14 13 12 17 17 H 1.09002 * 109.39576 * 320.18108 * 16 14 13 18 18 C 1.53133 * 109.39977 * 79.99939 * 16 14 13 19 19 C 1.53474 * 108.36822 * 168.11650 * 18 16 14 20 20 O 1.45437 * 108.10696 * 298.26716 * 19 18 16 21 21 C 1.34209 * 117.18009 * 46.44376 * 20 19 18 22 22 O 1.21511 * 118.45763 * 163.20228 * 21 20 19 23 23 N 1.33733 * 123.08088 * 343.20150 * 21 20 19 24 24 C 1.39484 * 120.33544 * 0.27419 * 12 11 10 25 25 C 1.36372 * 120.16192 * 359.43759 * 24 12 11 26 26 H 0.97001 * 120.00372 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.08697 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.91530 * 180.02562 * 11 10 9 29 29 H 0.97003 * 120.00023 * 215.72786 * 13 12 11 30 30 H 1.09007 * 109.68436 * 287.83658 * 18 16 14 31 31 H 1.08999 * 109.68591 * 48.35597 * 18 16 14 32 32 H 1.08995 * 109.73826 * 57.92274 * 19 18 16 33 33 H 1.09005 * 109.73692 * 178.61923 * 19 18 16 34 34 H 0.96998 * 118.52193 * 182.30952 * 23 21 20 35 35 H 1.07997 * 119.91948 * 179.71125 * 24 12 11 36 36 H 1.08008 * 120.08553 * 180.27884 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 2.4352 2.0782 -1.3986 5 1 1.4686 2.6362 0.7543 6 1 3.5666 1.4251 0.6443 7 6 2.0083 -1.2116 -0.0005 8 1 1.4867 -2.1364 0.1972 9 6 3.3957 -1.2252 -0.2594 10 6 4.2175 -2.2012 0.3377 11 6 5.5572 -2.2084 0.0824 12 6 6.1141 -1.2524 -0.7669 13 7 7.4828 -1.2659 -1.0222 14 6 8.1408 -2.4389 -1.1073 15 8 7.5583 -3.4787 -0.8827 16 6 9.6005 -2.4587 -1.4814 17 1 9.7839 -1.7213 -2.2629 18 6 10.4456 -2.1165 -0.2510 19 6 11.9135 -2.4313 -0.5697 20 8 12.0211 -3.8556 -0.8435 21 6 11.1086 -4.3920 -1.6687 22 8 11.3399 -5.4792 -2.1595 23 7 9.9567 -3.7860 -1.9759 24 6 5.3078 -0.2790 -1.3568 25 6 3.9656 -0.2627 -1.1157 26 1 -0.4851 0.8400 -0.0004 27 1 3.7878 -2.9419 0.9958 28 1 6.1885 -2.9562 0.5391 29 1 7.9634 -0.4308 -1.1349 30 1 10.3399 -1.0573 -0.0160 31 1 10.1170 -2.7154 0.5983 32 1 12.2303 -1.8634 -1.4444 33 1 12.5393 -2.1725 0.2844 34 1 9.3294 -4.2489 -2.5530 35 1 5.7467 0.4609 -2.0097 36 1 3.3417 0.4888 -1.5767 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858161283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:28 Heat of formation + Delta-G solvation = -85.943747 kcal Electronic energy + Delta-G solvation = -22334.295012 eV Core-core repulsion = 18783.464724 eV Total energy + Delta-G solvation = -3550.830288 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 6.74 seconds Orbital eigenvalues (eV) -41.43542 -39.88708 -37.81868 -37.34783 -35.59424 -34.72469 -33.27227 -31.94622 -30.04316 -29.89488 -27.58019 -24.88819 -24.26364 -22.29215 -21.10777 -20.47490 -20.24684 -18.61142 -18.16406 -17.70732 -17.27765 -16.76907 -16.23113 -15.45642 -15.15189 -15.06333 -14.88081 -14.37845 -14.08032 -14.02363 -13.45490 -12.94692 -12.77122 -12.63623 -12.47804 -12.40053 -12.11796 -11.94358 -11.07223 -11.03317 -10.94776 -10.74676 -10.65183 -10.33764 -9.91577 -9.89222 -9.47326 -9.25293 -9.11259 -7.92629 -7.32707 -7.02611 -4.55156 2.08197 2.35812 2.44358 2.60144 2.75844 3.00570 3.08668 3.15032 3.21623 3.31185 3.87624 3.98220 4.16091 4.36033 4.39593 4.54935 4.70656 4.79032 4.99035 5.30092 5.37653 5.57309 5.79099 5.97490 6.30979 6.52255 6.54677 6.59627 6.72040 7.07032 7.12795 7.30914 7.36225 7.48945 7.72330 7.81242 7.89889 7.99536 8.23195 8.31648 8.56230 8.68482 9.99555 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.041539 B = 0.003298 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.904525 B = 8487.219724 C = 8849.165068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.079 3.921 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.439 4.439 8 H 0.092 0.908 9 C 0.090 3.910 10 C -0.199 4.199 11 C -0.066 4.066 12 C -0.017 4.017 13 N -0.641 5.641 14 C 0.489 3.511 15 O -0.513 6.513 16 C 0.120 3.880 17 H 0.104 0.896 18 C -0.168 4.168 19 C 0.063 3.937 20 O -0.343 6.343 21 C 0.663 3.337 22 O -0.532 6.532 23 N -0.709 5.709 24 C -0.084 4.084 25 C -0.229 4.229 26 H 0.286 0.714 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.398 0.602 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.425 0.575 35 H 0.097 0.903 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.706 4.874 -1.379 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.140 4.140 3 Si 0.746 3.254 4 H -0.197 1.197 5 H -0.220 1.220 6 H -0.166 1.166 7 C -0.467 4.467 8 H 0.110 0.890 9 C 0.087 3.913 10 C -0.219 4.219 11 C -0.086 4.086 12 C -0.109 4.109 13 N -0.285 5.285 14 C 0.274 3.726 15 O -0.388 6.388 16 C 0.010 3.990 17 H 0.122 0.878 18 C -0.206 4.206 19 C -0.011 4.011 20 O -0.254 6.254 21 C 0.416 3.584 22 O -0.417 6.417 23 N -0.377 5.377 24 C -0.104 4.104 25 C -0.248 4.248 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.232 0.768 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.265 0.735 35 H 0.115 0.885 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.520 3.659 -1.187 18.915 hybrid contribution -0.133 1.340 -0.343 1.390 sum 18.388 4.999 -1.530 19.116 Atomic orbital electron populations 1.69672 1.08039 1.30368 1.35224 1.26226 0.94873 1.01828 0.91051 0.86231 0.80928 0.79436 0.78848 1.19727 1.22028 1.16629 1.19538 0.91392 0.95681 1.40100 0.88979 1.17813 0.93452 0.90867 0.89191 1.20744 0.92604 1.03566 1.04986 1.20496 0.95489 0.96994 0.95602 1.17066 0.81178 1.04460 1.08158 1.42840 1.08366 1.07539 1.69753 1.20438 0.88109 0.84665 0.79434 1.90763 1.67966 1.32109 1.47978 1.21050 0.93633 0.86381 0.97917 0.87828 1.22559 0.94762 1.05500 0.97806 1.23497 0.96549 0.77795 1.03297 1.86728 1.50429 1.26336 1.61934 1.17740 0.79283 0.83819 0.77603 1.91051 1.78211 1.19975 1.52456 1.45102 1.19964 1.19129 1.53542 1.20104 0.93679 0.97952 0.98685 1.20619 0.94211 1.04555 1.05438 0.90312 0.87765 0.87024 0.76848 0.86988 0.88573 0.89999 0.86160 0.73486 0.88509 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.02 13.93 55.55 0.77 -20.24 16 2 C 0.08 2.00 5.47 -17.34 -0.09 1.90 16 3 Si 0.92 19.76 24.39 -169.99 -4.15 15.62 16 4 H -0.27 -5.60 6.66 56.52 0.38 -5.23 16 5 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.24 -5.27 6.67 56.52 0.38 -4.89 16 7 C -0.44 -11.54 9.59 -37.85 -0.36 -11.90 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 9 C 0.09 2.20 5.14 -106.80 -0.55 1.65 16 10 C -0.20 -4.58 9.74 -39.26 -0.38 -4.96 16 11 C -0.07 -1.39 8.61 -39.79 -0.34 -1.73 16 12 C -0.02 -0.31 6.30 -83.57 -0.53 -0.84 16 13 N -0.64 -8.52 5.30 -9.74 -0.05 -8.57 16 14 C 0.49 6.53 6.82 -10.99 -0.07 6.45 16 15 O -0.51 -9.33 13.83 5.56 0.08 -9.25 16 16 C 0.12 1.04 3.53 -69.25 -0.24 0.79 16 17 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 18 C -0.17 -1.05 5.56 -26.42 -0.15 -1.20 16 19 C 0.06 0.36 7.20 37.40 0.27 0.63 16 20 O -0.34 -3.86 10.50 -39.27 -0.41 -4.28 16 21 C 0.66 8.93 8.55 53.59 0.46 9.39 16 22 O -0.53 -9.33 17.95 -19.41 -0.35 -9.68 16 23 N -0.71 -8.05 4.85 -60.48 -0.29 -8.34 16 24 C -0.08 -1.63 9.90 -39.79 -0.39 -2.02 16 25 C -0.23 -5.14 6.93 -39.26 -0.27 -5.41 16 26 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 27 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.11 2.32 6.23 -52.49 -0.33 2.00 16 29 H 0.40 3.57 8.82 -40.82 -0.36 3.21 16 30 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.43 5.11 8.52 -40.82 -0.35 4.77 16 35 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.10 2.32 4.39 -52.48 -0.23 2.09 16 LS Contribution 305.63 15.07 4.61 4.61 Total: -1.00 -33.05 305.63 -6.29 -39.34 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -3.83 Total: 8.04 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -2.66 Total: -7.24 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.43 Total: -37.16 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.68 Total: -23.21 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.15 Total: 15.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.05 -6.29 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858161283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.601 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.74 seconds