Wall clock time and date at job start Tue Mar 31 2020 08:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86810 * 119.99790 * 2 1 4 4 H 1.48500 * 109.47012 * 272.59721 * 3 2 1 5 5 H 1.48500 * 109.46962 * 32.59782 * 3 2 1 6 6 H 1.48497 * 109.46990 * 152.59973 * 3 2 1 7 7 C 1.39907 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99779 * 347.76883 * 7 2 1 9 9 C 1.41148 * 119.99960 * 167.77560 * 7 2 1 10 10 C 1.40867 * 120.16190 * 148.77842 * 9 7 2 11 11 C 1.36376 * 119.82679 * 179.97438 * 10 9 7 12 12 C 1.39478 * 120.16947 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.83323 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99912 * 35.45658 * 13 12 11 15 15 O 1.21281 * 119.99960 * 355.59486 * 14 13 12 16 16 C 1.50701 * 120.00029 * 175.59744 * 14 13 12 17 17 H 1.09002 * 109.39576 * 320.18108 * 16 14 13 18 18 C 1.53133 * 109.39977 * 79.99939 * 16 14 13 19 19 C 1.53474 * 108.36822 * 168.11650 * 18 16 14 20 20 O 1.45437 * 108.10696 * 298.26716 * 19 18 16 21 21 C 1.34209 * 117.18009 * 46.44376 * 20 19 18 22 22 O 1.21511 * 118.45763 * 163.20228 * 21 20 19 23 23 N 1.33733 * 123.08088 * 343.20150 * 21 20 19 24 24 C 1.39484 * 120.33544 * 0.27419 * 12 11 10 25 25 C 1.36372 * 120.16192 * 359.43759 * 24 12 11 26 26 H 0.97001 * 120.00372 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.08697 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.91530 * 180.02562 * 11 10 9 29 29 H 0.97003 * 120.00023 * 215.72786 * 13 12 11 30 30 H 1.09007 * 109.68436 * 287.83658 * 18 16 14 31 31 H 1.08999 * 109.68591 * 48.35597 * 18 16 14 32 32 H 1.08995 * 109.73826 * 57.92274 * 19 18 16 33 33 H 1.09005 * 109.73692 * 178.61923 * 19 18 16 34 34 H 0.96998 * 118.52193 * 182.30952 * 23 21 20 35 35 H 1.07997 * 119.91948 * 179.71125 * 24 12 11 36 36 H 1.08008 * 120.08553 * 180.27884 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 2.4352 2.0782 -1.3986 5 1 1.4686 2.6362 0.7543 6 1 3.5666 1.4251 0.6443 7 6 2.0083 -1.2116 -0.0005 8 1 1.4867 -2.1364 0.1972 9 6 3.3957 -1.2252 -0.2594 10 6 4.2175 -2.2012 0.3377 11 6 5.5572 -2.2084 0.0824 12 6 6.1141 -1.2524 -0.7669 13 7 7.4828 -1.2659 -1.0222 14 6 8.1408 -2.4389 -1.1073 15 8 7.5583 -3.4787 -0.8827 16 6 9.6005 -2.4587 -1.4814 17 1 9.7839 -1.7213 -2.2629 18 6 10.4456 -2.1165 -0.2510 19 6 11.9135 -2.4313 -0.5697 20 8 12.0211 -3.8556 -0.8435 21 6 11.1086 -4.3920 -1.6687 22 8 11.3399 -5.4792 -2.1595 23 7 9.9567 -3.7860 -1.9759 24 6 5.3078 -0.2790 -1.3568 25 6 3.9656 -0.2627 -1.1157 26 1 -0.4851 0.8400 -0.0004 27 1 3.7878 -2.9419 0.9958 28 1 6.1885 -2.9562 0.5391 29 1 7.9634 -0.4308 -1.1349 30 1 10.3399 -1.0573 -0.0160 31 1 10.1170 -2.7154 0.5983 32 1 12.2303 -1.8634 -1.4444 33 1 12.5393 -2.1725 0.2844 34 1 9.3294 -4.2489 -2.5530 35 1 5.7467 0.4609 -2.0097 36 1 3.3417 0.4888 -1.5767 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858161283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:17 Heat of formation + Delta-G solvation = -112.571666 kcal Electronic energy + Delta-G solvation = -22335.449685 eV Core-core repulsion = 18783.464724 eV Total energy + Delta-G solvation = -3551.984961 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 15.32 seconds Orbital eigenvalues (eV) -42.33927 -41.12337 -39.37300 -38.31351 -36.58180 -36.14340 -34.95962 -32.74189 -31.75522 -31.45672 -28.52937 -26.36080 -25.13112 -23.89373 -22.64843 -21.72923 -21.05389 -19.51894 -19.38873 -19.21744 -18.34495 -18.13961 -17.13117 -17.08002 -16.32021 -16.00307 -15.77924 -15.65040 -15.34247 -15.22925 -14.79299 -14.59487 -14.27146 -14.12926 -13.79992 -13.47418 -13.11798 -12.72489 -12.69076 -12.61193 -12.39574 -11.99860 -11.82357 -11.65124 -11.63092 -11.17585 -10.91555 -10.81165 -10.34093 -9.61831 -8.98673 -8.86649 -6.46971 0.58838 0.85996 1.26605 1.34572 1.43186 1.49325 1.53656 1.71318 2.13221 2.14580 2.50268 2.62961 3.36161 3.48008 3.49969 3.79546 3.90951 4.22677 4.26930 4.30194 4.32947 4.65623 4.66798 4.88890 4.91923 4.92746 4.97590 5.08009 5.36774 5.48368 5.58167 5.68599 5.79596 5.90165 6.24081 6.35688 6.49430 6.58832 6.71707 6.78794 6.92560 7.25966 8.22022 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.041539 B = 0.003298 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.904525 B = 8487.219724 C = 8849.165068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.037 3.963 3 Si 0.977 3.023 4 H -0.249 1.249 5 H -0.284 1.284 6 H -0.242 1.242 7 C -0.485 4.485 8 H 0.047 0.953 9 C 0.069 3.931 10 C -0.216 4.216 11 C -0.078 4.078 12 C 0.020 3.980 13 N -0.629 5.629 14 C 0.493 3.507 15 O -0.565 6.565 16 C 0.127 3.873 17 H 0.157 0.843 18 C -0.165 4.165 19 C 0.057 3.943 20 O -0.360 6.360 21 C 0.665 3.335 22 O -0.587 6.587 23 N -0.707 5.707 24 C -0.081 4.081 25 C -0.234 4.234 26 H 0.294 0.706 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.427 0.573 30 H 0.158 0.842 31 H 0.072 0.928 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.420 0.580 35 H 0.149 0.851 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.050 8.423 -2.463 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.175 1.175 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.066 3.934 10 C -0.236 4.236 11 C -0.098 4.098 12 C -0.074 4.074 13 N -0.276 5.276 14 C 0.280 3.720 15 O -0.443 6.443 16 C 0.019 3.981 17 H 0.174 0.826 18 C -0.203 4.203 19 C -0.016 4.016 20 O -0.271 6.271 21 C 0.419 3.581 22 O -0.476 6.476 23 N -0.374 5.374 24 C -0.101 4.101 25 C -0.253 4.253 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.130 0.870 29 H 0.266 0.734 30 H 0.175 0.825 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.167 0.833 34 H 0.258 0.742 35 H 0.166 0.834 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 22.910 7.266 -2.264 24.142 hybrid contribution -1.191 0.118 0.007 1.197 sum 21.719 7.385 -2.256 23.051 Atomic orbital electron populations 1.69723 1.09417 1.31545 1.37960 1.27028 0.95568 1.04739 0.90277 0.85345 0.79468 0.75266 0.79924 1.17460 1.21117 1.16576 1.19472 0.92836 0.94914 1.44213 0.93461 1.17895 0.92717 0.92379 0.90397 1.20831 0.93807 1.03527 1.05418 1.20621 0.94570 0.98079 0.96547 1.17185 0.83863 1.01832 1.04518 1.42699 1.06144 1.09301 1.69416 1.21295 0.89837 0.83527 0.77382 1.90772 1.69610 1.34107 1.49769 1.21373 0.90008 0.86016 1.00685 0.82589 1.22671 0.94371 1.07812 0.95423 1.24025 0.96675 0.74911 1.05981 1.86698 1.49793 1.29752 1.60877 1.17790 0.79779 0.83288 0.77257 1.91002 1.79466 1.22392 1.54759 1.45157 1.19147 1.20155 1.52893 1.20522 0.92339 0.98751 0.98500 1.20795 0.95941 1.03859 1.04709 0.89601 0.88985 0.86966 0.73364 0.82458 0.90969 0.86873 0.83292 0.74174 0.83360 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.19 13.93 21.82 0.30 -46.89 16 2 C 0.04 1.94 5.47 85.24 0.47 2.41 16 3 Si 0.98 40.28 24.39 68.60 1.67 41.96 16 4 H -0.25 -9.35 6.66 99.48 0.66 -8.68 16 5 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.24 -9.82 6.67 99.48 0.66 -9.16 16 7 C -0.48 -27.31 9.59 23.39 0.22 -27.08 16 8 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 9 C 0.07 3.45 5.14 -21.28 -0.11 3.34 16 10 C -0.22 -10.25 9.74 22.48 0.22 -10.03 16 11 C -0.08 -3.22 8.61 22.13 0.19 -3.03 16 12 C 0.02 0.66 6.30 38.56 0.24 0.90 16 13 N -0.63 -13.15 5.30 -303.11 -1.61 -14.76 16 14 C 0.49 11.10 6.82 87.66 0.60 11.70 16 15 O -0.56 -19.53 13.83 -3.03 -0.04 -19.57 16 16 C 0.13 1.55 3.53 44.37 0.16 1.71 16 17 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 18 C -0.16 -1.14 5.56 30.80 0.17 -0.97 16 19 C 0.06 0.34 7.20 72.14 0.52 0.86 16 20 O -0.36 -7.16 10.50 -51.15 -0.54 -7.70 16 21 C 0.67 16.93 8.55 129.95 1.11 18.04 16 22 O -0.59 -20.74 17.95 19.93 0.36 -20.38 16 23 N -0.71 -14.22 4.85 -577.04 -2.80 -17.02 16 24 C -0.08 -2.76 9.90 22.13 0.22 -2.54 16 25 C -0.23 -10.02 6.93 22.48 0.16 -9.87 16 26 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 27 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.11 4.61 6.23 -2.91 -0.02 4.60 16 29 H 0.43 4.33 8.82 -92.71 -0.82 3.52 16 30 H 0.16 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 32 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.15 0.11 8.14 -2.38 -0.02 0.10 16 34 H 0.42 9.48 8.52 -92.71 -0.79 8.69 16 35 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.11 4.53 4.39 -2.91 -0.01 4.52 16 Total: -1.00 -81.20 305.63 0.97 -80.22 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.54 Total: 18.70 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.16 Total: -14.56 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -4.10 Total: -78.67 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.22 Total: -47.65 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.67 Total: 41.96 kcal Total: -81.20 0.97 -80.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858161283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.348 kcal (2) G-P(sol) polarization free energy of solvation -81.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.32 seconds